Non-Coding RNA Search

Ss1.1-Spl1-SPL01G080061.5

Sequence:


               
               CTCTTAGGCAACATGGCGGCGGCCGTGGGGCAGAGCCGGGGCTGAGGGATCGCGAGTGCG
GTGGGCTCCTACCGGGGGTGAAGGGTGCCTCAGCTGGGGGAGTAGGGGACTCGAACCTCA
ACCCATTCCTGTCCCCGACCTCACCGGGTTCCACTCTTCTCCTCCGCGCGGTGTGTCTGC
CGGGGCGGGGACGCATGATAGAGCCCGGGTTCCATCCCCGGTGCTCTGGGCTTCGGGGCA
AGCTCCTCCCGGTCTCCCGGCGCACCTGCTTTGCCTGGGTTCCCCCTCCATCCTCCTTTC
TCCAGCCTCCTCCCCACGCAGGGATCGTCAGTGGGACCGGAGCGCGGGCGGGCGCGACCC
CCCGGGACCATGTCCGGGTCCGACTCCACGCCCTTCCTCAGCCAGGCGGATGACACGGAT
GACGGACCGGCGCCCGGCATCCCGGGCTTGCCGGGGCCCATGGGGAACCCGAAGTCCGAG
GATCCCGAGGTCCTGGACCGGGAGGGACTGCAGCGCATCACGGGCTTGTCTTCAGGCCGC
TCGGCTCTCATAGTGGCGGTGCTGTGCTATATCAACCTCCTCAACTACATGGACCGCTTC
ACCGTGGCTGGCGTCCTTCCGGACATCGAGCAGTTCTTCGACATCGGAGACGGTAGCTCC
GGCCTCATTCAGACCGTGTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTGGCTAC
CTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCTTG
GTGACACTGGGGTCATCCTTCATCCCCAAAGAGCGATTCTGGCTGCTCCTTCTGACCCGG
GGCCTGGTGGGGGTTGGGGAGGCCANTTACTCCACCATCGCGCCCACCCTCATCGCTGAC
CTCTTCGTGGCAGACCAGCGGAGTCGGATGCTCAGCGTGTTCTACTTTGCCATCCCGGTG
GGCAGTGGTCTGGGTTACATCGCAGGCTCCAAAGTGAAAGATGTGGCCGGGGACTGGCAC
TGGGCTCTGAGGGTGACTCCAGGTCTAGGAGTGCTGGCCGTTGTACTGCTGTTCCTGGTA
GTACGGGAGCCACCAAGGGGAGCCGTGGAGCGCCACTCAGACTCACCACCCCTGAACCCC
ACCTCATGGTGGGCAGATCTGAGGGCTCTGGCCAGAAATCCTAGTTTCATCCTGTCCTCC
CTCGGCTTCACTGCTGTGGCCTTTGTTACGGGCTCGCTGGCTCTTTGGGCTCCTGCTTTC
TTGCTGCGTTCCCGTGTGGTCTTGGGTGAGACCCCACCCTGCCTTCCTGGAGACTCCTGC
TCTTCCTCTGACAGTCTCATCTTCGGGCTCATCACCTGCCTCACCGGGGTCCTGGGTGTG
GGCCTGGGTGTGGAGATCAGCCGCCGCCTCCGCCGCTCCAACCCCCGGGCTGACCCGCTG
GTTTGTGCTGCTGGCCTCCTGGGCTCCGCACCCTTCCTCTTCCTGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTAGGCAACATGGCGGCGGCCGTGGGGCAGAGCCGGGGCTGAGGGATCGCGAGTGCG
GTGGGCTCCTACCGGGGGTGAAGGGTGCCTCAGCTGGGGGAGTAGGGGACTCGAACCTCA
ACCCATTCCTGTCCCCGACCTCACCGGGTTCCACTCTTCTCCTCCGCGCGGTGTGTCTGC
CGGGGCGGGGACGCATGATAGAGCCCGGGTTCCATCCCCGGTGCTCTGGGCTTCGGGGCA
AGCTCCTCCCGGTCTCCCGGCGCACCTGCTTTGCCTGGGTTCCCCCTCCATCCTCCTTTC
TCCAGCCTCCTCCCCACGCAGGGATCGTCAGTGGGACCGGAGCGCGGGCGGGCGCGACCC
CCCGGGACCATGTCCGGGTCCGACTCCACGCCCTTCCTCAGCCAGGCGGATGACACGGAT
GACGGACCGGCGCCCGGCATCCCGGGCTTGCCGGGGCCCATGGGGAACCCGAAGTCCGAG
GATCCCGAGGTCCTGGACCGGGAGGGACTGCAGCGCATCACGGGCTTGTCTTCAGGCCGC
TCGGCTCTCATAGTGGCGGTGCTGTGCTATATCAACCTCCTCAACTACATGGACCGCTTC
ACCGTGGCTGGCGTCCTTCCGGACATCGAGCAGTTCTTCGACATCGGAGACGGTAGCTCC
GGCCTCATTCAGACCGTGTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTGGCTAC
CTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCTTG
GTGACACTGGGGTCATCCTTCATCCCCAAAGAGCGATTCTGGCTGCTCCTTCTGACCCGG
GGCCTGGTGGGGGTTGGGGAGGCCANTTACTCCACCATCGCGCCCACCCTCATCGCTGAC
CTCTTCGTGGCAGACCAGCGGAGTCGGATGCTCAGCGTGTTCTACTTTGCCATCCCGGTG
GGCAGTGGTCTGGGTTACATCGCAGGCTCCAAAGTGAAAGATGTGGCCGGGGACTGGCAC
TGGGCTCTGAGGGTGACTCCAGGTCTAGGAGTGCTGGCCGTTGTACTGCTGTTCCTGGTA
GTACGGGAGCCACCAAGGGGAGCCGTGGAGCGCCACTCAGACTCACCACCCCTGAACCCC
ACCTCATGGTGGGCAGATCTGAGGGCTCTGGCCAGAAATCCTAGTTTCATCCTGTCCTCC
CTCGGCTTCACTGCTGTGGCCTTTGTTACGGGCTCGCTGGCTCTTTGGGCTCCTGCTTTC
TTGCTGCGTTCCCGTGTGGTCTTGGGTGAGACCCCACCCTGCCTTCCTGGAGACTCCTGC
TCTTCCTCTGACAGTCTCATCTTCGGGCTCATCACCTGCCTCACCGGGGTCCTGGGTGTG
GGCCTGGGTGTGGAGATCAGCCGCCGCCTCCGCCGCTCCAACCCCCGGGCTGACCCGCTG
GTTTGTGCTGCTGGCCTCCTGGGCTCCGCACCCTTCCTCTTCCTGTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N953_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N953_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1071-1189, + strand, RNAz p=0.919929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1071-1189, + strand, RNAz p=0.919929

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-611, gnl|bosTau2|chr25 (24825736-24825139)
               

               
               1-611, gnl|Hg17|chr16 (28893610-28894215)
               

               
               1-611, gnl|Mm7|chr7 (122473971-122473394)
               


               
               805-965, gnl|bosTau2|chr19 (19582460-19582620)
               

               
               805-965, gnl|Hg17|chr17 (4380668-4380827)
               

               
               805-965, gnl|Mm7|chr11 (72540636-72540476)
               


               
               1032-1189, gnl|bosTau2|chr25 (24820934-24820778)
               

               
               1032-1189, gnl|Hg17|chr16 (28900291-28900439)
               

               
               1032-1189, gnl|Mm7|chr7 (122469449-122469296)
               


               
               1320-1484, gnl|bosTau2|chr19 (19585689-19585852)
               

               
               1320-1484, gnl|Hg17|chr17 (4383273-4383436)
               

               
               1320-1484, gnl|Mm7|chr11 (72538277-72538114)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr25 (24825736-24825139)
               

               
               1-611, gnl|Hg17|chr16 (28893610-28894215)
               

               
               1-611, gnl|Mm7|chr7 (122473971-122473394)
               


               
               805-965, gnl|bosTau2|chr19 (19582460-19582620)
               

               
               805-965, gnl|Hg17|chr17 (4380668-4380827)
               

               
               805-965, gnl|Mm7|chr11 (72540636-72540476)
               


               
               1032-1189, gnl|bosTau2|chr25 (24820934-24820778)
               

               
               1032-1189, gnl|Hg17|chr16 (28900291-28900439)
               

               
               1032-1189, gnl|Mm7|chr7 (122469449-122469296)
               


               
               1320-1484, gnl|bosTau2|chr19 (19585689-19585852)
               

               
               1320-1484, gnl|Hg17|chr17 (4383273-4383436)
               

               
               1320-1484, gnl|Mm7|chr11 (72538277-72538114)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-611, gnl\|bosTau2\|chr25 (24825736-24825139)
	1-611, gnl\|Hg17\|chr16 (28893610-28894215)
	1-611, gnl\|Mm7\|chr7 (122473971-122473394)

	805-965, gnl\|bosTau2\|chr19 (19582460-19582620)
	805-965, gnl\|Hg17\|chr17 (4380668-4380827)
	805-965, gnl\|Mm7\|chr11 (72540636-72540476)

	1032-1189, gnl\|bosTau2\|chr25 (24820934-24820778)
	1032-1189, gnl\|Hg17\|chr16 (28900291-28900439)
	1032-1189, gnl\|Mm7\|chr7 (122469449-122469296)

	1320-1484, gnl\|bosTau2\|chr19 (19585689-19585852)
	1320-1484, gnl\|Hg17\|chr17 (4383273-4383436)
	1320-1484, gnl\|Mm7\|chr11 (72538277-72538114)