Ss1.1-Spl1-SPL01G080077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAAAGCAACTGTACCTATTATTAAATTAACAGATTCTTTTACCGAAGTGAAAGTTGAT ATCAGCTTTAATGTACAAAATGGTGTGAGAGCAGCTGACCTCATCAAAGATTTTACCAAG AAATATCCTGTATTACCCTACTTGGTTTTAGTATTGAAACAATTCTTATTACAGAGGGAC CTTAATGAAGTATTTACAGGTGGGATTGGTTCTTACAGTCTCTTTTTAATGGCAGTCAGT TTCCTTCAGTTACATCCCAGGGAAGATGCTTGCATCCCCAATACAAACTATGGTGTTCTC TTAATAGAATTTTTTGAATTATATGGACGACACTTCAATTATTTAAAGACTGGCATCCGG ATAAAGGATGGTGGTTCCTATGTGGCCAAAGATGAAGTACAGAAAAATATGCTAGATGGC TACAGGCCATCAATGCTTTATATTGAAGATCCTTTACAACCAGGTAATGATGTTGGAAGG AGTTCCTATGGGGCCATGCAGGTGAAGCAGGCCTTCGATTATGCCTACGTGGTCTTGAGT CATGCTGTATCGCCCATAGCAAAGTACTATCCCAACAACGAAACGGAGAGCATCTTAGGT AGAATCATTAGAGTAACGGATGAAGTTGCCACATACAGAGATTGGATATCAAAGCAGTGG GGCTTGCAGAATAGGCCTGAGCCTTCATGCAATGGAAATGGTGTTACCTTGATAGTAGAT ACTCAGCAGTTAGATAAATGTAATAATAATCTATCTGAAGAAAATGAAGCCCTTGGAAAA TGTAGAAGTAAAACTTCGGAATCTCTTAGTAAACACTCTTCAAACTCTTCATCAGGTCCA GTGTCTTCCTCCTCTGCCACACAGTCCAGCTCTAGTGACGTTGATTCCGACGCGACGCCA TGCAAAACCCCCAAACAGCTGCTCTGCCGTCCGACCCCTGGGAATCGAGTAGGGTCGCAG GATGTGTCCTTGGAATCCTCTCAGGCAGTGGGAAAAATGCAGAGCGCCCAGGCCACTAGC ACCTCCAACAGCACCAACAAATCCCAGCATGGATCAGCAAGGCTCTTTCGTTCTTCCAGC AAAGGCTTCCAAGGTACAACCCAAACAAGCCATGGTTCCTTGATGACAAACAAACAACAT CAAGGCAAATCAAATAATCAGTATTACCATGGCAAAAAGAGGAAACACAAGAGGGACGCC CCCCTCTCAGACCTTTGTAGATAGTCGGCGTTGCACGATGGACTGTCTTCTGTGTGCAAT GGTCTCATGCTCAGGACAGTTGGATAGGGACTCCTGGGAGACGTTCGGGAGCCTTACACT GTTCAGACGTTGATTTAGCAACTGCGTTTTTTCCCAGCTCGCCACGGAATGGATCATGAA GACGGACAACTGCAAAAACAAAAAGCAAGCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAAAGCAACTGTACCTATTATTAAATTAACAGATTCTTTTACCGAAGTGAAAGTTGAT ATCAGCTTTAATGTACAAAATGGTGTGAGAGCAGCTGACCTCATCAAAGATTTTACCAAG AAATATCCTGTATTACCCTACTTGGTTTTAGTATTGAAACAATTCTTATTACAGAGGGAC CTTAATGAAGTATTTACAGGTGGGATTGGTTCTTACAGTCTCTTTTTAATGGCAGTCAGT TTCCTTCAGTTACATCCCAGGGAAGATGCTTGCATCCCCAATACAAACTATGGTGTTCTC TTAATAGAATTTTTTGAATTATATGGACGACACTTCAATTATTTAAAGACTGGCATCCGG ATAAAGGATGGTGGTTCCTATGTGGCCAAAGATGAAGTACAGAAAAATATGCTAGATGGC TACAGGCCATCAATGCTTTATATTGAAGATCCTTTACAACCAGGTAATGATGTTGGAAGG AGTTCCTATGGGGCCATGCAGGTGAAGCAGGCCTTCGATTATGCCTACGTGGTCTTGAGT CATGCTGTATCGCCCATAGCAAAGTACTATCCCAACAACGAAACGGAGAGCATCTTAGGT AGAATCATTAGAGTAACGGATGAAGTTGCCACATACAGAGATTGGATATCAAAGCAGTGG GGCTTGCAGAATAGGCCTGAGCCTTCATGCAATGGAAATGGTGTTACCTTGATAGTAGAT ACTCAGCAGTTAGATAAATGTAATAATAATCTATCTGAAGAAAATGAAGCCCTTGGAAAA TGTAGAAGTAAAACTTCGGAATCTCTTAGTAAACACTCTTCAAACTCTTCATCAGGTCCA GTGTCTTCCTCCTCTGCCACACAGTCCAGCTCTAGTGACGTTGATTCCGACGCGACGCCA TGCAAAACCCCCAAACAGCTGCTCTGCCGTCCGACCCCTGGGAATCGAGTAGGGTCGCAG GATGTGTCCTTGGAATCCTCTCAGGCAGTGGGAAAAATGCAGAGCGCCCAGGCCACTAGC ACCTCCAACAGCACCAACAAATCCCAGCATGGATCAGCAAGGCTCTTTCGTTCTTCCAGC AAAGGCTTCCAAGGTACAACCCAAACAAGCCATGGTTCCTTGATGACAAACAAACAACAT CAAGGCAAATCAAATAATCAGTATTACCATGGCAAAAAGAGGAAACACAAGAGGGACGCC CCCCTCTCAGACCTTTGTAGATAGTCGGCGTTGCACGATGGACTGTCTTCTGTGTGCAAT GGTCTCATGCTCAGGACAGTTGGATAGGGACTCCTGGGAGACGTTCGGGAGCCTTACACT GTTCAGACGTTGATTTAGCAACTGCGTTTTTTCCCAGCTCGCCACGGAATGGATCATGAA GACGGACAACTGCAAAAACAAAAAGCAAGCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 351-1203, + strand, RNAz p=0.980546 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 351-1203, + strand, RNAz p=0.980546 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 13-120, gnl|bosTau2|chr18 (17782507-17782614) | |
| 13-120, gnl|canFam2|chr2 (67968424-67968297) | |
| 13-120, gnl|danRer3|chr7 (28053640-28053518) | |
| 13-120, gnl|dasNov1|scaffold_49382 (4652-4771) | |
| 13-120, gnl|echTel1|scaffold_266468 (5352-5470) | |
| 13-120, gnl|fr1|chrUn (214714720-214714839) | |
| 13-120, gnl|galGal2|chr11 (6737538-6737411) | |
| 13-120, gnl|hg17|chr16 (48808959-48809086) | |
| 13-120, gnl|Hg17|chr16 (48808968-48809075) | |
| 13-120, gnl|loxAfr1|scaffold_9591 (67727-67613) | |
| 13-120, gnl|mm7|chr8 (86839799-86839922) | |
| 13-120, gnl|Mm7|chr8 (86839808-86839915) | |
| 13-120, gnl|monDom2|scaffold_35 (14939196-14939322) | |
| 13-120, gnl|oryCun1|scaffold_211533 (42247-42119) | |
| 13-120, gnl|panTro1|chrUn_random (12626395-12626522) | |
| 13-120, gnl|rheMac2|chr20 (48434431-48434558) | |
| 13-120, gnl|rn3|chr19 (20138018-20137891) | |
| 13-120, gnl|tetNig1|chr21 (4490820-4490695) | |
| 245-470, gnl|bosTau2|chr18 (17785789-17786014) | |
| 245-470, gnl|canFam2|chr2 (67965120-67964857) | |
| 245-470, gnl|danRer3|chr7 (28050472-28050228) | |
| 245-470, gnl|dasNov1|scaffold_5424 (16893-17148) | |
| 245-470, gnl|echTel1|scaffold_301525 (2987-3259) | |
| 245-470, gnl|fr1|chrUn (214715294-214715537) | |
| 245-470, gnl|galGal2|chr11 (6734872-6734619) | |
| 245-470, gnl|hg17|chr16 (48814563-48814815) | |
| 245-470, gnl|Hg17|chr16 (48814581-48814806) | |
| 245-470, gnl|loxAfr1|scaffold_9591 (65075-64824) | |
| 245-470, gnl|mm7|chr8 (86842905-86843168) | |
| 245-470, gnl|Mm7|chr8 (86842934-86843159) | |
| 245-470, gnl|monDom2|scaffold_35 (14941639-14941896) | |
| 245-470, gnl|oryCun1|scaffold_211533 (38925-38670) | |
| 245-470, gnl|panTro1|chrUn_random (12632003-12632255) | |
| 245-470, gnl|rheMac2|chr20 (48440378-48440630) | |
| 245-470, gnl|rn3|chr19 (20135462-20135213) | |
| 245-470, gnl|tetNig1|chr21 (4489321-4489085) | |
| 245-470, gnl|xenTro1|scaffold_1267 (158383-158131) | |
| 694-883, gnl|bosTau2|chr18 (17788044-17788227) | |
| 1045-1416, gnl|bosTau2|chr18 (17791234-17791605) | |
| 1045-1416, gnl|Hg17|chr16 (48820561-48820950) | |
| 1045-1416, gnl|Mm7|chr8 (86849395-86849763) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-120, gnl|bosTau2|chr18 (17782507-17782614) | |
| 13-120, gnl|canFam2|chr2 (67968424-67968297) | |
| 13-120, gnl|danRer3|chr7 (28053640-28053518) | |
| 13-120, gnl|dasNov1|scaffold_49382 (4652-4771) | |
| 13-120, gnl|echTel1|scaffold_266468 (5352-5470) | |
| 13-120, gnl|fr1|chrUn (214714720-214714839) | |
| 13-120, gnl|galGal2|chr11 (6737538-6737411) | |
| 13-120, gnl|hg17|chr16 (48808959-48809086) | |
| 13-120, gnl|Hg17|chr16 (48808968-48809075) | |
| 13-120, gnl|loxAfr1|scaffold_9591 (67727-67613) | |
| 13-120, gnl|mm7|chr8 (86839799-86839922) | |
| 13-120, gnl|Mm7|chr8 (86839808-86839915) | |
| 13-120, gnl|monDom2|scaffold_35 (14939196-14939322) | |
| 13-120, gnl|oryCun1|scaffold_211533 (42247-42119) | |
| 13-120, gnl|panTro1|chrUn_random (12626395-12626522) | |
| 13-120, gnl|rheMac2|chr20 (48434431-48434558) | |
| 13-120, gnl|rn3|chr19 (20138018-20137891) | |
| 13-120, gnl|tetNig1|chr21 (4490820-4490695) | |
| 245-470, gnl|bosTau2|chr18 (17785789-17786014) | |
| 245-470, gnl|canFam2|chr2 (67965120-67964857) | |
| 245-470, gnl|danRer3|chr7 (28050472-28050228) | |
| 245-470, gnl|dasNov1|scaffold_5424 (16893-17148) | |
| 245-470, gnl|echTel1|scaffold_301525 (2987-3259) | |
| 245-470, gnl|fr1|chrUn (214715294-214715537) | |
| 245-470, gnl|galGal2|chr11 (6734872-6734619) | |
| 245-470, gnl|hg17|chr16 (48814563-48814815) | |
| 245-470, gnl|Hg17|chr16 (48814581-48814806) | |
| 245-470, gnl|loxAfr1|scaffold_9591 (65075-64824) | |
| 245-470, gnl|mm7|chr8 (86842905-86843168) | |
| 245-470, gnl|Mm7|chr8 (86842934-86843159) | |
| 245-470, gnl|monDom2|scaffold_35 (14941639-14941896) | |
| 245-470, gnl|oryCun1|scaffold_211533 (38925-38670) | |
| 245-470, gnl|panTro1|chrUn_random (12632003-12632255) | |
| 245-470, gnl|rheMac2|chr20 (48440378-48440630) | |
| 245-470, gnl|rn3|chr19 (20135462-20135213) | |
| 245-470, gnl|tetNig1|chr21 (4489321-4489085) | |
| 245-470, gnl|xenTro1|scaffold_1267 (158383-158131) | |
| 694-883, gnl|bosTau2|chr18 (17788044-17788227) | |
| 1045-1416, gnl|bosTau2|chr18 (17791234-17791605) | |
| 1045-1416, gnl|Hg17|chr16 (48820561-48820950) | |
| 1045-1416, gnl|Mm7|chr8 (86849395-86849763) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mas (0.210305) | |
| col (0.195008) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| col (0.195008) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| cbl (0.114797) |