Ss1.1-Spl1-SPL01G100056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGATCCGCCGAAGTGTTCCGGAAGGAGGCGAACCCCGAGGCGGGCAGGGCAAGCCTTCG CGGCGGCCCGCAAAGTCCAACGTCTAGTGGGGCTCGGCGAGGGCGGGAGAGCTGGAGCCT GGCCCCGGTCCGGCGGGAGCCGAGCTCGTTCCGGAAGAAGCCGAGCGGACCGGCTACGGC CTCGGCGTCCCGGGCGTGAGGCGATAGAGGCGGTGGCGACAGCGCGGGCCGGGATGAACC GCGACGGCTGAGGTGGCGGAGGTGCCGGCTGCGCGAGCCAGACAGAGACTTCTGCGAAGC GCCAGCCCCACGCTCAGGGCTTCGCTTCGAGCCCTGCCCCCGCGAGCCTCCCGGACCCCT TTGTGCGGCCGGAGGCGGCGGCGGGAACGGCCATGGCGGCCAACATGTACCGAGTGGGGG ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTGAGAAGGATTGAAGAGC TCAACAAGACGGCAAATGGAAATGTGGAGGCAAAGGTTGTGTGCCTTTTCCGGCGAAGGG ACATTTCTGGTAGCCTCAACAGCCTGGCTGATAGTAATGCCAGGGAGTTTGAGGAGGAAT CAAAGCAGCCAGGGGTGTCGGAACAGCAGCGACATCAACTGAAGCACCGCGAGCTTTTTC TTTCTCGGCAGTTTGAATCGCTACCAGCCACCCACATAAGGGGGAAATGCAGTGTGACCC TCTTGAATGAGACAGATATCTTGAGCCAGTACCTGGAAAAGGAGGACTGCTTTTTTTATT CGCTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCTGATCAGGGAGAGATCCGAGTTG GTTGCAAATACCAAGCTGAGATCCCAGATCGCCTGGCAGAGGGAGAATCTGATAATCGGA ACCAGCAGAAGATGGAGATGAAAGTCTGGGATCCAGACAACCCTCTCACAGACCGGCAGA TTGATCAGTTTCTCGTGGTGGCCCGGGCTGTGGGGACCTTTGCGAGAGCCCTAGATTGCA GCAGCTCCATTCGGCAGCCGAGCCTGCACATGAGTGCAGCTGCTGCCTCCCGAGATATCA CCCTGTTTCACGCCATGGATACACTGCAAAGGAACGGCTATGACCTGGCTAAGGCCATGT CGACCCTGGTGCCCCAGGGGGGCCCGGTGCTGTGTCGGGACGAGATGGAAGAATGGTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGATCCGCCGAAGTGTTCCGGAAGGAGGCGAACCCCGAGGCGGGCAGGGCAAGCCTTCG CGGCGGCCCGCAAAGTCCAACGTCTAGTGGGGCTCGGCGAGGGCGGGAGAGCTGGAGCCT GGCCCCGGTCCGGCGGGAGCCGAGCTCGTTCCGGAAGAAGCCGAGCGGACCGGCTACGGC CTCGGCGTCCCGGGCGTGAGGCGATAGAGGCGGTGGCGACAGCGCGGGCCGGGATGAACC GCGACGGCTGAGGTGGCGGAGGTGCCGGCTGCGCGAGCCAGACAGAGACTTCTGCGAAGC GCCAGCCCCACGCTCAGGGCTTCGCTTCGAGCCCTGCCCCCGCGAGCCTCCCGGACCCCT TTGTGCGGCCGGAGGCGGCGGCGGGAACGGCCATGGCGGCCAACATGTACCGAGTGGGGG ATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGGTGAGAAGGATTGAAGAGC TCAACAAGACGGCAAATGGAAATGTGGAGGCAAAGGTTGTGTGCCTTTTCCGGCGAAGGG ACATTTCTGGTAGCCTCAACAGCCTGGCTGATAGTAATGCCAGGGAGTTTGAGGAGGAAT CAAAGCAGCCAGGGGTGTCGGAACAGCAGCGACATCAACTGAAGCACCGCGAGCTTTTTC TTTCTCGGCAGTTTGAATCGCTACCAGCCACCCACATAAGGGGGAAATGCAGTGTGACCC TCTTGAATGAGACAGATATCTTGAGCCAGTACCTGGAAAAGGAGGACTGCTTTTTTTATT CGCTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCTGATCAGGGAGAGATCCGAGTTG GTTGCAAATACCAAGCTGAGATCCCAGATCGCCTGGCAGAGGGAGAATCTGATAATCGGA ACCAGCAGAAGATGGAGATGAAAGTCTGGGATCCAGACAACCCTCTCACAGACCGGCAGA TTGATCAGTTTCTCGTGGTGGCCCGGGCTGTGGGGACCTTTGCGAGAGCCCTAGATTGCA GCAGCTCCATTCGGCAGCCGAGCCTGCACATGAGTGCAGCTGCTGCCTCCCGAGATATCA CCCTGTTTCACGCCATGGATACACTGCAAAGGAACGGCTATGACCTGGCTAAGGCCATGT CGACCCTGGTGCCCCAGGGGGGCCCGGTGCTGTGTCGGGACGAGATGGAAGAATGGTCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-418, gnl|bosTau2|chr29 (32052408-32051990) | |
| 1-418, gnl|Hg17|chr11 (62125897-62125473) | |
| 1-418, gnl|Mm7|chr19 (8622120-8622542) | |
| 583-701, gnl|bosTau2|chr29 (32048854-32048736) | |
| 583-701, gnl|canFam2|chr17 (37295745-37295671) | |
| 583-701, gnl|canFam2|chr18 (57067594-57067426) | |
| 583-701, gnl|danRer3|chr12 (23042798-23042734) | |
| 583-701, gnl|danRer3|chr17 (44784650-44784802) | |
| 583-701, gnl|dasNov1|scaffold_60037 (2916-2990) | |
| 583-701, gnl|dasNov1|scaffold_60037 (2914-3056) | |
| 583-701, gnl|echTel1|scaffold_223562 (12223-12149) | |
| 583-701, gnl|echTel1|scaffold_323516 (41541-41678) | |
| 583-701, gnl|fr1|chrUn (106934728-106934654) | |
| 583-701, gnl|fr1|chrUn (106934740-106934592) | |
| 583-701, gnl|galGal2|chr8 (3979529-3979690) | |
| 583-701, gnl|hg17|chr11 (62122558-62122726) | |
| 583-701, gnl|Hg17|chr11 (62122687-62122569) | |
| 583-701, gnl|hg17|chr2 (158644595-158644669) | |
| 583-701, gnl|loxAfr1|scaffold_13886 (52540-52708) | |
| 583-701, gnl|loxAfr1|scaffold_652 (50634-50560) | |
| 583-701, gnl|mm7|chr19 (8626037-8625963) | |
| 583-701, gnl|mm7|chr19 (8626049-8625885) | |
| 583-701, gnl|Mm7|chr19 (8625918-8626036) | |
| 583-701, gnl|monDom2|scaffold_150 (858770-858934) | |
| 583-701, gnl|oryCun1|scaffold_162254 (1974-1806) | |
| 583-701, gnl|oryCun1|scaffold_199160 (75667-75595) | |
| 583-701, gnl|panTro1|chr13 (47841757-47841831) | |
| 583-701, gnl|panTro1|chr9 (63118125-63118293) | |
| 583-701, gnl|rheMac2|chr13 (42727015-42726941) | |
| 583-701, gnl|rheMac2|chr14 (11494446-11494278) | |
| 583-701, gnl|rn3|chr1 (211780449-211780284) | |
| 583-701, gnl|rn3|chr11 (66984868-66984942) | |
| 583-701, gnl|tetNig1|chrUn_random (23928366-23928502) | |
| 583-701, gnl|xenTro1|scaffold_1376 (35305-35231) | |
| 583-701, gnl|xenTro1|scaffold_1376 (35307-35149) | |
| 763-883, gnl|bosTau2|chr29 (32048362-32048242) | |
| 763-883, gnl|canFam2|chr18 (57068100-57067958) | |
| 763-883, gnl|danRer3|chr17 (44770524-44770652) | |
| 763-883, gnl|echTel1|scaffold_183144 (3339-3465) | |
| 763-883, gnl|fr1|chrUn (106935142-106935010) | |
| 763-883, gnl|galGal2|chr8 (3974484-3974611) | |
| 763-883, gnl|hg17|chr11 (62122054-62122196) | |
| 763-883, gnl|Hg17|chr11 (62122191-62122071) | |
| 763-883, gnl|loxAfr1|scaffold_40425 (29741-29613) | |
| 763-883, gnl|mm7|chr19 (8626563-8626424) | |
| 763-883, gnl|Mm7|chr19 (8626427-8626547) | |
| 763-883, gnl|monDom2|scaffold_150 (858106-858236) | |
| 763-883, gnl|oryCun1|scaffold_188426 (130-7) | |
| 763-883, gnl|panTro1|chr9 (63117621-63117763) | |
| 763-883, gnl|rheMac2|chr14 (11494950-11494808) | |
| 763-883, gnl|rn3|chr1 (211780923-211780785) | |
| 763-883, gnl|tetNig1|chrUn_random (23928010-23928140) | |
| 763-883, gnl|xenTro1|scaffold_1376 (36207-36079) | |
| 1079-1200, gnl|bosTau2|chr21 (49391442-49391321) | |
| 1079-1200, gnl|Hg17|chr14 (104998143-104998261) | |
| 1079-1200, gnl|Mm7|chr12 (110652972-110653091) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-418, gnl|bosTau2|chr29 (32052408-32051990) | |
| 1-418, gnl|Hg17|chr11 (62125897-62125473) | |
| 1-418, gnl|Mm7|chr19 (8622120-8622542) | |
| 583-701, gnl|bosTau2|chr29 (32048854-32048736) | |
| 583-701, gnl|canFam2|chr17 (37295745-37295671) | |
| 583-701, gnl|canFam2|chr18 (57067594-57067426) | |
| 583-701, gnl|danRer3|chr12 (23042798-23042734) | |
| 583-701, gnl|danRer3|chr17 (44784650-44784802) | |
| 583-701, gnl|dasNov1|scaffold_60037 (2916-2990) | |
| 583-701, gnl|dasNov1|scaffold_60037 (2914-3056) | |
| 583-701, gnl|echTel1|scaffold_223562 (12223-12149) | |
| 583-701, gnl|echTel1|scaffold_323516 (41541-41678) | |
| 583-701, gnl|fr1|chrUn (106934728-106934654) | |
| 583-701, gnl|fr1|chrUn (106934740-106934592) | |
| 583-701, gnl|galGal2|chr8 (3979529-3979690) | |
| 583-701, gnl|hg17|chr11 (62122558-62122726) | |
| 583-701, gnl|Hg17|chr11 (62122687-62122569) | |
| 583-701, gnl|hg17|chr2 (158644595-158644669) | |
| 583-701, gnl|loxAfr1|scaffold_13886 (52540-52708) | |
| 583-701, gnl|loxAfr1|scaffold_652 (50634-50560) | |
| 583-701, gnl|mm7|chr19 (8626037-8625963) | |
| 583-701, gnl|mm7|chr19 (8626049-8625885) | |
| 583-701, gnl|Mm7|chr19 (8625918-8626036) | |
| 583-701, gnl|monDom2|scaffold_150 (858770-858934) | |
| 583-701, gnl|oryCun1|scaffold_162254 (1974-1806) | |
| 583-701, gnl|oryCun1|scaffold_199160 (75667-75595) | |
| 583-701, gnl|panTro1|chr13 (47841757-47841831) | |
| 583-701, gnl|panTro1|chr9 (63118125-63118293) | |
| 583-701, gnl|rheMac2|chr13 (42727015-42726941) | |
| 583-701, gnl|rheMac2|chr14 (11494446-11494278) | |
| 583-701, gnl|rn3|chr1 (211780449-211780284) | |
| 583-701, gnl|rn3|chr11 (66984868-66984942) | |
| 583-701, gnl|tetNig1|chrUn_random (23928366-23928502) | |
| 583-701, gnl|xenTro1|scaffold_1376 (35305-35231) | |
| 583-701, gnl|xenTro1|scaffold_1376 (35307-35149) | |
| 763-883, gnl|bosTau2|chr29 (32048362-32048242) | |
| 763-883, gnl|canFam2|chr18 (57068100-57067958) | |
| 763-883, gnl|danRer3|chr17 (44770524-44770652) | |
| 763-883, gnl|echTel1|scaffold_183144 (3339-3465) | |
| 763-883, gnl|fr1|chrUn (106935142-106935010) | |
| 763-883, gnl|galGal2|chr8 (3974484-3974611) | |
| 763-883, gnl|hg17|chr11 (62122054-62122196) | |
| 763-883, gnl|Hg17|chr11 (62122191-62122071) | |
| 763-883, gnl|loxAfr1|scaffold_40425 (29741-29613) | |
| 763-883, gnl|mm7|chr19 (8626563-8626424) | |
| 763-883, gnl|Mm7|chr19 (8626427-8626547) | |
| 763-883, gnl|monDom2|scaffold_150 (858106-858236) | |
| 763-883, gnl|oryCun1|scaffold_188426 (130-7) | |
| 763-883, gnl|panTro1|chr9 (63117621-63117763) | |
| 763-883, gnl|rheMac2|chr14 (11494950-11494808) | |
| 763-883, gnl|rn3|chr1 (211780923-211780785) | |
| 763-883, gnl|tetNig1|chrUn_random (23928010-23928140) | |
| 763-883, gnl|xenTro1|scaffold_1376 (36207-36079) | |
| 1079-1200, gnl|bosTau2|chr21 (49391442-49391321) | |
| 1079-1200, gnl|Hg17|chr14 (104998143-104998261) | |
| 1079-1200, gnl|Mm7|chr12 (110652972-110653091) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |