Non-Coding RNA Search

Ss1.1-Spl1-SPL01G100062.5

Sequence:


               
               TCATTGAACCTTAGTCTGGAGCAAAAGCACACCACCTGCTCCAGATAATGGTACTTCAGC
GTGGGGTGAGCCAAACGAAAGCAGTCCTGGGTGGGGAAAATGCTACATTTACAAGGAGTG
GTTATTGTCATGGAGAAGCTGTTACATACAGTTGGTTCCTTCTTCTCTTAAAGATTCCAA
ATCTATGCAAGACGGCTGGGGGGAGAGTGACGGGCCCGTGACAGGAACTCGCCATCCCAG
CTGGGAAGAGGAGGAGGATGGAGGCGTCTGGAACACCGCCGGCTCTCAGGGAAGTGCTTC
CTCCCACAACTCAGCAAGCTGGGGACAAGGAGGAAAGAAGCAAATGAAGGTAGCCTGCTT
ATTCATTCTTCGAAGGCAGAAGCCAGGCAGCTAGAGAGTCCCTGAGGTCCTGAGTGAGGG
TGAAAATATTTCCTTAAGAACAAATAACTACTTGCTCTTTACCCCTCATCTTCCTTCCCC
GTGACCTTGGGATCTCCAACTACAAGACTGTTGCTGTGGGTAAAATGGAATTTTCCAAAG
AGATGATTTTTTTTTCATTTTAGTTTCCAGATTGTAGTGAGTCCTTGAAAGCTTTTAAGG
CACACTTGATAAATGTGTTAGGCGTTTGTGTTCTAAAGCCAAGCGAGTCCTCAGAGTAAA
TCCCCGTGGCTGTGCAGGAGAGAAACCGCAGTTCGGTAGCTTCGTAGCCTGGCCACTGGC
GGTCAGCACAGCCGCTCTTGTCTGGCTCGGGAAATTCCGGGGCCCAGACCCTTTTCCCGA
CGGAGTGAAGGGCCCGCGCGTCCCCTGCTGCAGCGGCCGATGACTCATCGACATCCTGTA
CCGCCTGTGTGCCCCACAGCCTGACTTTCTGTCTCTTGGAACGACGTAGTTTCTCCTTTG
ATTTGCATCATTTGATGAGGACGTTTGGTTTTCCATCTAGAACCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTGAACCTTAGTCTGGAGCAAAAGCACACCACCTGCTCCAGATAATGGTACTTCAGC
GTGGGGTGAGCCAAACGAAAGCAGTCCTGGGTGGGGAAAATGCTACATTTACAAGGAGTG
GTTATTGTCATGGAGAAGCTGTTACATACAGTTGGTTCCTTCTTCTCTTAAAGATTCCAA
ATCTATGCAAGACGGCTGGGGGGAGAGTGACGGGCCCGTGACAGGAACTCGCCATCCCAG
CTGGGAAGAGGAGGAGGATGGAGGCGTCTGGAACACCGCCGGCTCTCAGGGAAGTGCTTC
CTCCCACAACTCAGCAAGCTGGGGACAAGGAGGAAAGAAGCAAATGAAGGTAGCCTGCTT
ATTCATTCTTCGAAGGCAGAAGCCAGGCAGCTAGAGAGTCCCTGAGGTCCTGAGTGAGGG
TGAAAATATTTCCTTAAGAACAAATAACTACTTGCTCTTTACCCCTCATCTTCCTTCCCC
GTGACCTTGGGATCTCCAACTACAAGACTGTTGCTGTGGGTAAAATGGAATTTTCCAAAG
AGATGATTTTTTTTTCATTTTAGTTTCCAGATTGTAGTGAGTCCTTGAAAGCTTTTAAGG
CACACTTGATAAATGTGTTAGGCGTTTGTGTTCTAAAGCCAAGCGAGTCCTCAGAGTAAA
TCCCCGTGGCTGTGCAGGAGAGAAACCGCAGTTCGGTAGCTTCGTAGCCTGGCCACTGGC
GGTCAGCACAGCCGCTCTTGTCTGGCTCGGGAAATTCCGGGGCCCAGACCCTTTTCCCGA
CGGAGTGAAGGGCCCGCGCGTCCCCTGCTGCAGCGGCCGATGACTCATCGACATCCTGTA
CCGCCTGTGTGCCCCACAGCCTGACTTTCTGTCTCTTGGAACGACGTAGTTTCTCCTTTG
ATTTGCATCATTTGATGAGGACGTTTGGTTTTCCATCTAGAACCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-276, + strand, RNAz p=0.59926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, + strand, RNAz p=0.59926

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               118-353, gnl|bosTau2|chr5 (70209454-70209220)
               

               
               118-353, gnl|Hg17|chr22 (38993874-38994108)
               

               
               118-353, gnl|Mm7|chr15 (80968638-80968867)
               


               
               375-947, gnl|bosTau2|chr5 (70209154-70208623)
               

               
               375-947, gnl|Hg17|chr22 (38994471-38995342)
               

               
               375-947, gnl|Mm7|chr15 (80968942-80969584)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-353, gnl|bosTau2|chr5 (70209454-70209220)
               

               
               118-353, gnl|Hg17|chr22 (38993874-38994108)
               

               
               118-353, gnl|Mm7|chr15 (80968638-80968867)
               


               
               375-947, gnl|bosTau2|chr5 (70209154-70208623)
               

               
               375-947, gnl|Hg17|chr22 (38994471-38995342)
               

               
               375-947, gnl|Mm7|chr15 (80968942-80969584)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	118-353, gnl\|bosTau2\|chr5 (70209454-70209220)
	118-353, gnl\|Hg17\|chr22 (38993874-38994108)
	118-353, gnl\|Mm7\|chr15 (80968638-80968867)

	375-947, gnl\|bosTau2\|chr5 (70209154-70208623)
	375-947, gnl\|Hg17\|chr22 (38994471-38995342)
	375-947, gnl\|Mm7\|chr15 (80968942-80969584)