Non-Coding RNA Search

Ss1.1-Spl1-SPL01G100083.5

Sequence:


               
               ATATGGAGTTTCATTGGCCCTGTCACCTTCATTATTCTGCTAAATATTATCTTCCTGGTG
ATCACATTGTGCAAAATGGTGAAGCACTCAAATACTTTGAAACCAGATTCTAGCAGGTTG
GAAAACATTAAGTCTTGGGTGCTTGGCGCTTTCGCTCTTCTTTGTCTTCTTGGCCTAACC
TGGTCATTTGGGTTGCTTTTTATTAATGAGGAGACGATTGTGATGGCATATCTCTTCACC
ATCTTTAATGCTTTCCAGGGAGTGTTCATTTTCATCTTTCACTGTGCTCTCCAAAAGAAA
GTACGAAAAGAATACGGGAAGTGCTTCAGACACTCATATTGCTGCGGTGGCCTCCCAACC
GAAAGCCCCCACAGTTCAGTGAAGGCATCCACGACCAGAACCAGTGCTCGGTATTCCTCT
GGCACACAGAGTCGTATAAGAAGGATGTGGAATGACACTGTGAGAAAACAATCTGAATCT
TCTTTTATCTCAGGTGACATCAATAGCACTTCAACACTTAATCAAGGACATTCACTGAAC
AGTGCCAGGGATACAAGTGCCATGGATACTCTACCGCTAAATGGTAACTTTAACAACAGC
TACTCCCTGCGCAAGGGGGACTATAACGACAGCGTGCAGGTCGTGGACTGTGGACTAAGT
CTGAACGATACCGCTTTTGAGAAAATGATCATTTCAGAGTTAGTGCACAACAACCTGCGG
GGCGGCGGCAAGGCCCACAACCTCGAGCTCACGCTCCCCGTCAAACCCGTGATCGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGGAGTTTCATTGGCCCTGTCACCTTCATTATTCTGCTAAATATTATCTTCCTGGTG
ATCACATTGTGCAAAATGGTGAAGCACTCAAATACTTTGAAACCAGATTCTAGCAGGTTG
GAAAACATTAAGTCTTGGGTGCTTGGCGCTTTCGCTCTTCTTTGTCTTCTTGGCCTAACC
TGGTCATTTGGGTTGCTTTTTATTAATGAGGAGACGATTGTGATGGCATATCTCTTCACC
ATCTTTAATGCTTTCCAGGGAGTGTTCATTTTCATCTTTCACTGTGCTCTCCAAAAGAAA
GTACGAAAAGAATACGGGAAGTGCTTCAGACACTCATATTGCTGCGGTGGCCTCCCAACC
GAAAGCCCCCACAGTTCAGTGAAGGCATCCACGACCAGAACCAGTGCTCGGTATTCCTCT
GGCACACAGAGTCGTATAAGAAGGATGTGGAATGACACTGTGAGAAAACAATCTGAATCT
TCTTTTATCTCAGGTGACATCAATAGCACTTCAACACTTAATCAAGGACATTCACTGAAC
AGTGCCAGGGATACAAGTGCCATGGATACTCTACCGCTAAATGGTAACTTTAACAACAGC
TACTCCCTGCGCAAGGGGGACTATAACGACAGCGTGCAGGTCGTGGACTGTGGACTAAGT
CTGAACGATACCGCTTTTGAGAAAATGATCATTTCAGAGTTAGTGCACAACAACCTGCGG
GGCGGCGGCAAGGCCCACAACCTCGAGCTCACGCTCCCCGTCAAACCCGTGATCGGAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               604-763, - strand, RNAz p=0.991222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-763, - strand, RNAz p=0.991222

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               629-738, - strand, RNAmicro p=0.999999
               

               
               638-716, + strand, RNAmicro p=0.999861

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               629-738, - strand, RNAmicro p=0.999999
               

               
               638-716, + strand, RNAmicro p=0.999861

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               604-763, CJ020534 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020534.1|), blast E-value=0, identity=100% 
               

               
               604-763, DB791045 full-length enriched swine cDNA library, adult immature 
(dbj|DB791045.1|), blast E-value=0, identity=100% 
               

               
               607-752, 152991 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665044.1|), 
blast E-value=0, identity=92.47% 
               

               
               607-755, io89a05.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CK999700.1|), blast E-value=0, identity=93.29% 
               

               
               607-755, io89a05.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN001217.1|), blast E-value=0, identity=92.62% 
               

               
               607-752, LB029109.CR_N14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369220.1|), 
blast E-value=0, identity=92.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               604-763, CJ020534 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ020534.1|), blast E-value=0, identity=100% 
               

               
               604-763, DB791045 full-length enriched swine cDNA library, adult immature 
(dbj|DB791045.1|), blast E-value=0, identity=100% 
               

               
               607-752, 152991 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665044.1|), 
blast E-value=0, identity=92.47% 
               

               
               607-755, io89a05.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CK999700.1|), blast E-value=0, identity=93.29% 
               

               
               607-755, io89a05.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN001217.1|), blast E-value=0, identity=92.62% 
               

               
               607-752, LB029109.CR_N14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369220.1|), 
blast E-value=0, identity=92.47%

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               132-303, gnl|bosTau2|chr3 (47556088-47555917)
               

               
               132-303, gnl|canFam2|chr6 (68667770-68667577)
               

               
               132-303, gnl|danRer3|chr15 (5530748-5530935)
               

               
               132-303, gnl|dasNov1|scaffold_263 (118218-118022)
               

               
               132-303, gnl|echTel1|scaffold_310480 (43607-43416)
               

               
               132-303, gnl|fr1|chrUn (38651070-38650889)
               

               
               132-303, gnl|galGal2|chr8 (17741930-17741731)
               

               
               132-303, gnl|hg17|chr1 (82159505-82159702)
               

               
               132-303, gnl|Hg17|chr1 (82159513-82159684)
               

               
               132-303, gnl|loxAfr1|scaffold_5036 (53510-53709)
               

               
               132-303, gnl|mm7|chr3 (148726827-148726627)
               

               
               132-303, gnl|Mm7|chr3 (148726817-148726646)
               

               
               132-303, gnl|monDom2|scaffold_16 (6386996-6386796)
               

               
               132-303, gnl|oryCun1|scaffold_197604 (54301-54105)
               

               
               132-303, gnl|panTro1|chr1 (80764522-80764719)
               

               
               132-303, gnl|rheMac2|chr1 (84785556-84785753)
               

               
               132-303, gnl|rn3|chr2 (247085801-247085601)
               

               
               132-303, gnl|tetNig1|chr1 (12778939-12779122)
               

               
               132-303, gnl|xenTro1|scaffold_650 (561639-561444)
               


               
               525-780, gnl|bosTau2|chr3 (47547424-47547169)
               

               
               525-780, gnl|Hg17|chr1 (82168094-82168349)
               

               
               525-780, gnl|Mm7|chr3 (148718214-148717959)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-303, gnl|bosTau2|chr3 (47556088-47555917)
               

               
               132-303, gnl|canFam2|chr6 (68667770-68667577)
               

               
               132-303, gnl|danRer3|chr15 (5530748-5530935)
               

               
               132-303, gnl|dasNov1|scaffold_263 (118218-118022)
               

               
               132-303, gnl|echTel1|scaffold_310480 (43607-43416)
               

               
               132-303, gnl|fr1|chrUn (38651070-38650889)
               

               
               132-303, gnl|galGal2|chr8 (17741930-17741731)
               

               
               132-303, gnl|hg17|chr1 (82159505-82159702)
               

               
               132-303, gnl|Hg17|chr1 (82159513-82159684)
               

               
               132-303, gnl|loxAfr1|scaffold_5036 (53510-53709)
               

               
               132-303, gnl|mm7|chr3 (148726827-148726627)
               

               
               132-303, gnl|Mm7|chr3 (148726817-148726646)
               

               
               132-303, gnl|monDom2|scaffold_16 (6386996-6386796)
               

               
               132-303, gnl|oryCun1|scaffold_197604 (54301-54105)
               

               
               132-303, gnl|panTro1|chr1 (80764522-80764719)
               

               
               132-303, gnl|rheMac2|chr1 (84785556-84785753)
               

               
               132-303, gnl|rn3|chr2 (247085801-247085601)
               

               
               132-303, gnl|tetNig1|chr1 (12778939-12779122)
               

               
               132-303, gnl|xenTro1|scaffold_650 (561639-561444)
               


               
               525-780, gnl|bosTau2|chr3 (47547424-47547169)
               

               
               525-780, gnl|Hg17|chr1 (82168094-82168349)
               

               
               525-780, gnl|Mm7|chr3 (148718214-148717959)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	629-738, - strand, RNAmicro p=0.999999
	638-716, + strand, RNAmicro p=0.999861

	604-763, CJ020534 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ020534.1\|), blast E-value=0, identity=100%
	604-763, DB791045 full-length enriched swine cDNA library, adult immature (dbj\|DB791045.1\|), blast E-value=0, identity=100%
	607-752, 152991 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE665044.1\|), blast E-value=0, identity=92.47%
	607-755, io89a05.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris (gb\|CK999700.1\|), blast E-value=0, identity=93.29%
	607-755, io89a05.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris (gb\|CN001217.1\|), blast E-value=0, identity=92.62%
	607-752, LB029109.CR_N14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE369220.1\|), blast E-value=0, identity=92.47%

	132-303, gnl\|bosTau2\|chr3 (47556088-47555917)
	132-303, gnl\|canFam2\|chr6 (68667770-68667577)
	132-303, gnl\|danRer3\|chr15 (5530748-5530935)
	132-303, gnl\|dasNov1\|scaffold_263 (118218-118022)
	132-303, gnl\|echTel1\|scaffold_310480 (43607-43416)
	132-303, gnl\|fr1\|chrUn (38651070-38650889)
	132-303, gnl\|galGal2\|chr8 (17741930-17741731)
	132-303, gnl\|hg17\|chr1 (82159505-82159702)
	132-303, gnl\|Hg17\|chr1 (82159513-82159684)
	132-303, gnl\|loxAfr1\|scaffold_5036 (53510-53709)
	132-303, gnl\|mm7\|chr3 (148726827-148726627)
	132-303, gnl\|Mm7\|chr3 (148726817-148726646)
	132-303, gnl\|monDom2\|scaffold_16 (6386996-6386796)
	132-303, gnl\|oryCun1\|scaffold_197604 (54301-54105)
	132-303, gnl\|panTro1\|chr1 (80764522-80764719)
	132-303, gnl\|rheMac2\|chr1 (84785556-84785753)
	132-303, gnl\|rn3\|chr2 (247085801-247085601)
	132-303, gnl\|tetNig1\|chr1 (12778939-12779122)
	132-303, gnl\|xenTro1\|scaffold_650 (561639-561444)

	525-780, gnl\|bosTau2\|chr3 (47547424-47547169)
	525-780, gnl\|Hg17\|chr1 (82168094-82168349)
	525-780, gnl\|Mm7\|chr3 (148718214-148717959)