Non-Coding RNA Search

Ss1.1-Spl1-SPL01G100102.5

Sequence:


               
               TGATGAGGGTCTCCACGATGCAGGCCTGGTGGGGGTAGTCCACCAGGGAGGAGAGAGACA
CTGTGGCCTCAGTGGGCCGGGGCCGCAGCAGCGTGGGCCCAAACACGATGCCCAGGTTCC
CTGGTGTCATCTTGTTGTCCTGCTCCACCTCCACAATCCTGCGCAGGTGCCGCACCAAGT
ACTGCAGTGTGGCCCGGTACTCCAGCGGCAGGTCCTGTAGGAGCTCCCGCAGCCGGCCTG
CCATGGCCACTGCTGAAGCCTCTCTCTCAGTGACGTCCACTCGGCCCCGGGATGCTGCCT
TGGCCTCAGCCTCTGCCTTGAGACTGTCCTTGGCCAGCCCCACAAGCTCACGGTAGAGGC
GGAAGGAGATGAGTGGCTCGGGCAGCTGGCGCAGGTAGAGTTTGAGGACATTGCTGATGT
CGTGGGGTGAGGCCTGCGACAGCTCCACCAGCTCCTTTCCATTCTCAAAGGCCTGGCACA
GCTTCTCCACACGTGTCTTCACCCCATTGACCCGGTAGATACCCTCCTCACACTCAGCAC
CCTGGAAGTAGACATAGCTGTTGCACTCCCGGCACTTGGCGGGCGTGCGGAGCTTCCGGA
GCCGGTGGGTACGAGCTGCCTTGGACAGCCCCACGTGGCGGAAGGGCCCACTGGGCACCG
CCACAGGCAGCTCTGGGGCCATGCCATTGAGGTCAGTCTGGTCAAAGGCTGATGCCCCTG
CACTGCCCTCCTGGTCGGCCAGCTCCTCGCTGGATGACATGGTGCCACTGGAAGACATCC
GTTCAAACTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGAGGGTCTCCACGATGCAGGCCTGGTGGGGGTAGTCCACCAGGGAGGAGAGAGACA
CTGTGGCCTCAGTGGGCCGGGGCCGCAGCAGCGTGGGCCCAAACACGATGCCCAGGTTCC
CTGGTGTCATCTTGTTGTCCTGCTCCACCTCCACAATCCTGCGCAGGTGCCGCACCAAGT
ACTGCAGTGTGGCCCGGTACTCCAGCGGCAGGTCCTGTAGGAGCTCCCGCAGCCGGCCTG
CCATGGCCACTGCTGAAGCCTCTCTCTCAGTGACGTCCACTCGGCCCCGGGATGCTGCCT
TGGCCTCAGCCTCTGCCTTGAGACTGTCCTTGGCCAGCCCCACAAGCTCACGGTAGAGGC
GGAAGGAGATGAGTGGCTCGGGCAGCTGGCGCAGGTAGAGTTTGAGGACATTGCTGATGT
CGTGGGGTGAGGCCTGCGACAGCTCCACCAGCTCCTTTCCATTCTCAAAGGCCTGGCACA
GCTTCTCCACACGTGTCTTCACCCCATTGACCCGGTAGATACCCTCCTCACACTCAGCAC
CCTGGAAGTAGACATAGCTGTTGCACTCCCGGCACTTGGCGGGCGTGCGGAGCTTCCGGA
GCCGGTGGGTACGAGCTGCCTTGGACAGCCCCACGTGGCGGAAGGGCCCACTGGGCACCG
CCACAGGCAGCTCTGGGGCCATGCCATTGAGGTCAGTCTGGTCAAAGGCTGATGCCCCTG
CACTGCCCTCCTGGTCGGCCAGCTCCTCGCTGGATGACATGGTGCCACTGGAAGACATCC
GTTCAAACTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29127019|gb|AAH48129.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29127019|gb|AAH48129.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-317, - strand, RNAz p=0.75299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.75299

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               158-388, gnl|bosTau2|chr7 (26530686-26530456)
               

               
               158-388, gnl|canFam2|chr20 (60799663-60799497)
               

               
               158-388, gnl|danRer3|chrNA (39090016-39089848)
               

               
               158-388, gnl|echTel1|scaffold_308091 (4533-4374)
               

               
               158-388, gnl|fr1|chrUn (274515711-274515909)
               

               
               158-388, gnl|galGal2|chr28 (2796391-2796562)
               

               
               158-388, gnl|hg17|chr19 (1033825-1033993)
               

               
               158-388, gnl|Hg17|chr19 (1034066-1033836)
               

               
               158-388, gnl|loxAfr1|scaffold_82003 (4297-4465)
               

               
               158-388, gnl|mm7|chr10 (79808659-79808827)
               

               
               158-388, gnl|Mm7|chr10 (79808900-79808670)
               

               
               158-388, gnl|monDom2|scaffold_75 (7047916-7047748)
               

               
               158-388, gnl|panTro1|chr20_random (311242-311071)
               

               
               158-388, gnl|rheMac2|chr19 (829584-829752)
               

               
               158-388, gnl|rn3|chr7 (11191042-11190875)
               

               
               158-388, gnl|tetNig1|chr1_random (3149634-3149442)
               

               
               158-388, gnl|xenTro1|scaffold_342 (617475-617640)
               


               
               523-702, gnl|bosTau2|chr7 (26529529-26529351)
               

               
               523-702, gnl|Hg17|chr19 (1032064-1031889)
               

               
               523-702, gnl|Mm7|chr10 (79807222-79807044)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-388, gnl|bosTau2|chr7 (26530686-26530456)
               

               
               158-388, gnl|canFam2|chr20 (60799663-60799497)
               

               
               158-388, gnl|danRer3|chrNA (39090016-39089848)
               

               
               158-388, gnl|echTel1|scaffold_308091 (4533-4374)
               

               
               158-388, gnl|fr1|chrUn (274515711-274515909)
               

               
               158-388, gnl|galGal2|chr28 (2796391-2796562)
               

               
               158-388, gnl|hg17|chr19 (1033825-1033993)
               

               
               158-388, gnl|Hg17|chr19 (1034066-1033836)
               

               
               158-388, gnl|loxAfr1|scaffold_82003 (4297-4465)
               

               
               158-388, gnl|mm7|chr10 (79808659-79808827)
               

               
               158-388, gnl|Mm7|chr10 (79808900-79808670)
               

               
               158-388, gnl|monDom2|scaffold_75 (7047916-7047748)
               

               
               158-388, gnl|panTro1|chr20_random (311242-311071)
               

               
               158-388, gnl|rheMac2|chr19 (829584-829752)
               

               
               158-388, gnl|rn3|chr7 (11191042-11190875)
               

               
               158-388, gnl|tetNig1|chr1_random (3149634-3149442)
               

               
               158-388, gnl|xenTro1|scaffold_342 (617475-617640)
               


               
               523-702, gnl|bosTau2|chr7 (26529529-26529351)
               

               
               523-702, gnl|Hg17|chr19 (1032064-1031889)
               

               
               523-702, gnl|Mm7|chr10 (79807222-79807044)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	158-388, gnl\|bosTau2\|chr7 (26530686-26530456)
	158-388, gnl\|canFam2\|chr20 (60799663-60799497)
	158-388, gnl\|danRer3\|chrNA (39090016-39089848)
	158-388, gnl\|echTel1\|scaffold_308091 (4533-4374)
	158-388, gnl\|fr1\|chrUn (274515711-274515909)
	158-388, gnl\|galGal2\|chr28 (2796391-2796562)
	158-388, gnl\|hg17\|chr19 (1033825-1033993)
	158-388, gnl\|Hg17\|chr19 (1034066-1033836)
	158-388, gnl\|loxAfr1\|scaffold_82003 (4297-4465)
	158-388, gnl\|mm7\|chr10 (79808659-79808827)
	158-388, gnl\|Mm7\|chr10 (79808900-79808670)
	158-388, gnl\|monDom2\|scaffold_75 (7047916-7047748)
	158-388, gnl\|panTro1\|chr20_random (311242-311071)
	158-388, gnl\|rheMac2\|chr19 (829584-829752)
	158-388, gnl\|rn3\|chr7 (11191042-11190875)
	158-388, gnl\|tetNig1\|chr1_random (3149634-3149442)
	158-388, gnl\|xenTro1\|scaffold_342 (617475-617640)

	523-702, gnl\|bosTau2\|chr7 (26529529-26529351)
	523-702, gnl\|Hg17\|chr19 (1032064-1031889)
	523-702, gnl\|Mm7\|chr10 (79807222-79807044)