Non-Coding RNA Search

Ss1.1-Spl1-SPL01G110043.5

Sequence:


               
               TTTTAGTATTGTCTTTGATAATATTCAACATTTTCATGACCTGGTTATAGCCTTTGCTGG
TGTTTTTAAAATACCTTGACTCAACCACAAAAGACCGAGTCCCTTTTTTAAAAAAAAAAA
ACAACAAACAAAAACAAAAAAGCAACCAGGGCCATTTGTACAGATGAAGGGACGAAGAAC
ATGGGTGGCTGTACCATGAGTTAGAAGACCAGGCCACCCACTGTTTCGAGCCATCCCCAG
TTGGCTGGTGGGAACAAAGACGACACCAGGTAGCATGCGGCCATCTTTGCCCAGTGGCCG
ATAGCCCAGGCTGTGTCAGGCCATCTGGGAATGTTCCACCCCAGACAGACTTACAGACAC
CTTCCTTAGAAGGTCCCGCTTCCTGCCATGCAACGTTTTCTCAGAAAGGCCCAGGGTCCA
TTCTGGTTCTTATCAGGATGCCCCACTCTGCTCATGGACTTGTCCACAGCTTGCAATCGC
CAAGGGCCGATACGCTCCCACAGCCCAGGCTCCAGGCACCTCCCTCAGCCATCTCGGAGG
AAGCCATGGGCTCGGCACCTGAGGCAGGTTTCCTGGGTCCCCTCCCAAGTGAGCCTCCAC
CAGCAAGTTCAGCAAAGAGCTTTCCAGAACTGGGGTGCCTGAAGCCCGTGCTCTGGGGAC
AGTACTCTTCCAGGTGATTCTGGAGCCAGGCCAAGGGGGGCGGGGCAGGGAGGGAGGCAT
CAAGGCGCCTGGGGTTGGAGCAAGCCCCAGCTGGTGACATTCAGGTGACCACAGCCTCCC
CAAGCAGGGGCGGTTCTGAACTCCGGGGAGATGCTTCCCTAATCCTCTCGGATGACTACT
TGGAGCCATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAGTATTGTCTTTGATAATATTCAACATTTTCATGACCTGGTTATAGCCTTTGCTGG
TGTTTTTAAAATACCTTGACTCAACCACAAAAGACCGAGTCCCTTTTTTAAAAAAAAAAA
ACAACAAACAAAAACAAAAAAGCAACCAGGGCCATTTGTACAGATGAAGGGACGAAGAAC
ATGGGTGGCTGTACCATGAGTTAGAAGACCAGGCCACCCACTGTTTCGAGCCATCCCCAG
TTGGCTGGTGGGAACAAAGACGACACCAGGTAGCATGCGGCCATCTTTGCCCAGTGGCCG
ATAGCCCAGGCTGTGTCAGGCCATCTGGGAATGTTCCACCCCAGACAGACTTACAGACAC
CTTCCTTAGAAGGTCCCGCTTCCTGCCATGCAACGTTTTCTCAGAAAGGCCCAGGGTCCA
TTCTGGTTCTTATCAGGATGCCCCACTCTGCTCATGGACTTGTCCACAGCTTGCAATCGC
CAAGGGCCGATACGCTCCCACAGCCCAGGCTCCAGGCACCTCCCTCAGCCATCTCGGAGG
AAGCCATGGGCTCGGCACCTGAGGCAGGTTTCCTGGGTCCCCTCCCAAGTGAGCCTCCAC
CAGCAAGTTCAGCAAAGAGCTTTCCAGAACTGGGGTGCCTGAAGCCCGTGCTCTGGGGAC
AGTACTCTTCCAGGTGATTCTGGAGCCAGGCCAAGGGGGGCGGGGCAGGGAGGGAGGCAT
CAAGGCGCCTGGGGTTGGAGCAAGCCCCAGCTGGTGACATTCAGGTGACCACAGCCTCCC
CAAGCAGGGGCGGTTCTGAACTCCGGGGAGATGCTTCCCTAATCCTCTCGGATGACTACT
TGGAGCCATAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-156, - strand, RNAz p=0.997913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, - strand, RNAz p=0.997913

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               40-109, BW965851 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965851.1|), blast E-value=2e-30, identity=100% 
               

               
               40-109, CJ016922 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ016922.1|), blast E-value=2e-30, identity=100% 
               

               
               40-109, LB0175.CR_F04 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820171.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB02932.CR_K20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV923898.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB03029.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV933475.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB029106.CR_E21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368073.1|), 
blast E-value=3e-23, identity=97.14%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-109, BW965851 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965851.1|), blast E-value=2e-30, identity=100% 
               

               
               40-109, CJ016922 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ016922.1|), blast E-value=2e-30, identity=100% 
               

               
               40-109, LB0175.CR_F04 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV820171.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB02932.CR_K20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV923898.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB03029.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV933475.1|), 
blast E-value=3e-23, identity=97.14% 
               

               
               40-109, LB029106.CR_E21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE368073.1|), 
blast E-value=3e-23, identity=97.14%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-850, gnl|bosTau2|chr28 (27875803-27876638)
               

               
               1-850, gnl|Hg17|chr10 (80744341-80745188)
               

               
               1-850, gnl|Mm7|chr14 (23336037-23336837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-850, gnl|bosTau2|chr28 (27875803-27876638)
               

               
               1-850, gnl|Hg17|chr10 (80744341-80745188)
               

               
               1-850, gnl|Mm7|chr14 (23336037-23336837)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	40-109, BW965851 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BW965851.1\|), blast E-value=2e-30, identity=100%
	40-109, CJ016922 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ016922.1\|), blast E-value=2e-30, identity=100%
	40-109, LB0175.CR_F04 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV820171.1\|), blast E-value=3e-23, identity=97.14%
	40-109, LB02932.CR_K20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV923898.1\|), blast E-value=3e-23, identity=97.14%
	40-109, LB03029.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV933475.1\|), blast E-value=3e-23, identity=97.14%
	40-109, LB029106.CR_E21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE368073.1\|), blast E-value=3e-23, identity=97.14%

	1-850, gnl\|bosTau2\|chr28 (27875803-27876638)
	1-850, gnl\|Hg17\|chr10 (80744341-80745188)
	1-850, gnl\|Mm7\|chr14 (23336037-23336837)