Non-Coding RNA Search

Ss1.1-Spl1-SPL01G110080.5

Sequence:


               
               ATTTTATTTTACTCTGATTACGATTATTCAGGAATACGCTCTCTCAGATAAGTTTAGGGT
TAGCTTTCTGATTCATAACTTTTTACTGCGTTGATTTCTGTAATGGTTTGATTTTCTTTC
TGAGGGTGGGGATGGGTGGGGACAGAGGACGTCCGTCCGGTTTCCATCGGGACAGACCAC
TGCACACACTCAGGAGGCTCTCGCCAGGGTGCACTGAGCGGCGGGGAGGGAAGCCTGGGA
GAGAAGCCTGGGAGAGGGAGGTGAGATGGAGGCACGGGGGTGGGGGGCAGTATGGGGAGT
GGCCGGCGCGAGAGGCCAGGGCAGGGGTCCTCTCGGGCTGGGGGTACTTTGCTGGGAATG
AGGCCAAGTGGTCATGGGTCCTTGTGTGTCATTGATGAGCAGTTCTTTTTCCCTATTTCT
TCCCTCCTGGCCTCTGGCAGCCGGGAGGCTCCCCTTCCACCCCTGCGGGCATTCCCGCCA
CAGGTTCTGCAAACCGGTTACTTTCACAGACATTCCTGCTAGAAACTCTGGGACAAATAC
CTCTTTAGTTCAGATGCTGCTCACTCTCTCACGTTGCTTCTGGAAGGGGAAGCAGTCCTT
CCGCAGAACTGCTCAGACAGTGACAGGGGACCCACGGCCCCAGAGACGGGAGGGGAGGGT
GCCACTGGGCTGCTGACTCCCTGCTGGGGGAGAGGGAGGTCCATCTGGGTCCTGGGACCC
TCCTCTCCCTCCTGGAGCTCATTGAGGCTAGGGTGGCAGGCAATCATGAGCTCGGTGACC
TTGAGGGAAAAAACAGAAACCCAAGAGCAGTGAGATGCGACTCTCCAGTAGCCCCAGGAC
AAGGCGGTCTGAGTCAGGGCCTGGAGATGGCCGGGGTAGGGGGGCACTCGGCTGCAGCAA
GGTGCCCACACCAAGGCTTATACTGGTCTAAGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATTTTACTCTGATTACGATTATTCAGGAATACGCTCTCTCAGATAAGTTTAGGGT
TAGCTTTCTGATTCATAACTTTTTACTGCGTTGATTTCTGTAATGGTTTGATTTTCTTTC
TGAGGGTGGGGATGGGTGGGGACAGAGGACGTCCGTCCGGTTTCCATCGGGACAGACCAC
TGCACACACTCAGGAGGCTCTCGCCAGGGTGCACTGAGCGGCGGGGAGGGAAGCCTGGGA
GAGAAGCCTGGGAGAGGGAGGTGAGATGGAGGCACGGGGGTGGGGGGCAGTATGGGGAGT
GGCCGGCGCGAGAGGCCAGGGCAGGGGTCCTCTCGGGCTGGGGGTACTTTGCTGGGAATG
AGGCCAAGTGGTCATGGGTCCTTGTGTGTCATTGATGAGCAGTTCTTTTTCCCTATTTCT
TCCCTCCTGGCCTCTGGCAGCCGGGAGGCTCCCCTTCCACCCCTGCGGGCATTCCCGCCA
CAGGTTCTGCAAACCGGTTACTTTCACAGACATTCCTGCTAGAAACTCTGGGACAAATAC
CTCTTTAGTTCAGATGCTGCTCACTCTCTCACGTTGCTTCTGGAAGGGGAAGCAGTCCTT
CCGCAGAACTGCTCAGACAGTGACAGGGGACCCACGGCCCCAGAGACGGGAGGGGAGGGT
GCCACTGGGCTGCTGACTCCCTGCTGGGGGAGAGGGAGGTCCATCTGGGTCCTGGGACCC
TCCTCTCCCTCCTGGAGCTCATTGAGGCTAGGGTGGCAGGCAATCATGAGCTCGGTGACC
TTGAGGGAAAAAACAGAAACCCAAGAGCAGTGAGATGCGACTCTCCAGTAGCCCCAGGAC
AAGGCGGTCTGAGTCAGGGCCTGGAGATGGCCGGGGTAGGGGGGCACTCGGCTGCAGCAA
GGTGCCCACACCAAGGCTTATACTGGTCTAAGAAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               383-530, - strand, RNAz p=0.99108

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-530, - strand, RNAz p=0.99108

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-641, gnl|bosTau2|chr5 (64477130-64476507)
               

               
               1-641, gnl|Hg17|chr12 (3263054-3264074)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-641, gnl|bosTau2|chr5 (64477130-64476507)
               

               
               1-641, gnl|Hg17|chr12 (3263054-3264074)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cov (0.132153)

	1-641, gnl\|bosTau2\|chr5 (64477130-64476507)
	1-641, gnl\|Hg17\|chr12 (3263054-3264074)