Ss1.1-Spl1-SPL01G110089.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCAGTGTGCAGAGTTGGCCGGCACCGGACCAGAAGAAGGAGGAGGGGGAGAGGGCGC GCTTGTGGGAGATCCTGAAGATGGCCAAAGATGACTCCACTGTTCGTTGCTTCCAGAGCC TGCTGGTTTTTGGAAATGTGATTATTGGTATGTGCGGCATCGCCCTGACTGCAGAGTGCA TCTTCTTCGTATCAGACCAATATAGCCTCTACCCGCTGCTTGAAGCCACTGACAATGATG ACATCTATGGGGCAGCCTGGATTGGCATATTTGTCGGCATCTGCCTCTTCTGCCTGTCTG TCCTAGGCATTGTAGGCATCATGAAGTCCAACAGGAAAATCCTTTTGGTGTACTTCATTC TGATGTTTATTGTATATGGCTTTGAAGTGGCATCTTGTATCACAGCTGCAACACAACGAG ACTTTTTCACACCCAACCTCTTCCTGAAGCAGATGCTGGAGAGGTACCAGAACAACAGTC CTCCAAGCAACGATGACAAGTGGAAAAACAATGGGGTCACCAAGACCTGGGACAGGCTCA TGCTCCAGGACTATTGCTGTGGGGTCAATGGCCCATCCGACTGGCAGAAATACACCTCTG CCTTCCGGACTGAGAATAACGATGCGGACTACCCCTGGCCCCGTCAGTGCTGTGTCATGA ACAAGCTTAAAGAACCTCTCAACCTGGAGGCCTGCAAACTAGGAGTACCCGGTTACTATC ACAACCAGGGCTGCTATGAACTGATCTCTGGACCAATGAACCGACATGCCTGGGGGGTTG CATGGTTTGGATTTGCCATTCTCTGTTGGACTTTTTGGGTTCTCCTGGGTACCATGTTCT ACTGGAGCAGAATTGAATATTAAGAATAAAAAGTAACCACCGCACCACCTACCCCCAGTG ACTCTACATTTGGTTCTGGAACCGCTCTGTCCTAATATTCCACCTTTGTGCTCCTTGGGA TTATATGGGTTCTTCCTCAAATGGCCATGTCAGTCGGTATGGAGTTCCTCTAGGCTCTCA GACTCCTGAAAGTCTCACCACTGGTGTTTTCACCCTCATCTAGGAGTCTGCAACACTGTT ATAGACTGTAGGAAAAAGAGAAGGTAGGATAGCAGATAGTAACCATTCTCATCCCTGTTT ATTTTTAATTTGGGGGCATAAAGATGTACACAGGAACTTGTGTTATCACAGTGAGATGAG TCTGTATTTGGACAGCAAATTTGCGTGTATTTCTCACTGCTTTCTAAGAGAAAGCTTCAA AGGCTTTCCTTCATCTCAGTACTGTCCAGGTGAGAGAACTAAGGAAAACAGTGCTGAAAT ATACTTTGTCCTATAGTGGCTTCCATCTTCAGAGACTCAAGTGATTCTTTCAATGCCACC TTGGCATCCTTTTTAAAAGGACAGTGTCTCATCTTGAGCCAACAATGGTTGAAATTTCCT CTCCGACACTGCAGAGTGATGTGTGCTTAGTAACCTCAATTCTCTCATTAATTAAAAGTA TGTGGACTTTGGGGGACAAAGGAGGGAACTGTTCTGTATTTACCAATCTCAACCTCAATC CCCTTTCAAACAGGGGAGAAGCAAGCCAGCTGTTAGGTCGGTGATTTTATTTACTGTCAA AATATTTCTGATCTCTGTTTCCTCTGGTAATCCTGACGGAAGTTCTTATAACTCAGCATT TGTTTGCCTAGCCTTATAAATAAAGAGGGCTTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCAGTGTGCAGAGTTGGCCGGCACCGGACCAGAAGAAGGAGGAGGGGGAGAGGGCGC GCTTGTGGGAGATCCTGAAGATGGCCAAAGATGACTCCACTGTTCGTTGCTTCCAGAGCC TGCTGGTTTTTGGAAATGTGATTATTGGTATGTGCGGCATCGCCCTGACTGCAGAGTGCA TCTTCTTCGTATCAGACCAATATAGCCTCTACCCGCTGCTTGAAGCCACTGACAATGATG ACATCTATGGGGCAGCCTGGATTGGCATATTTGTCGGCATCTGCCTCTTCTGCCTGTCTG TCCTAGGCATTGTAGGCATCATGAAGTCCAACAGGAAAATCCTTTTGGTGTACTTCATTC TGATGTTTATTGTATATGGCTTTGAAGTGGCATCTTGTATCACAGCTGCAACACAACGAG ACTTTTTCACACCCAACCTCTTCCTGAAGCAGATGCTGGAGAGGTACCAGAACAACAGTC CTCCAAGCAACGATGACAAGTGGAAAAACAATGGGGTCACCAAGACCTGGGACAGGCTCA TGCTCCAGGACTATTGCTGTGGGGTCAATGGCCCATCCGACTGGCAGAAATACACCTCTG CCTTCCGGACTGAGAATAACGATGCGGACTACCCCTGGCCCCGTCAGTGCTGTGTCATGA ACAAGCTTAAAGAACCTCTCAACCTGGAGGCCTGCAAACTAGGAGTACCCGGTTACTATC ACAACCAGGGCTGCTATGAACTGATCTCTGGACCAATGAACCGACATGCCTGGGGGGTTG CATGGTTTGGATTTGCCATTCTCTGTTGGACTTTTTGGGTTCTCCTGGGTACCATGTTCT ACTGGAGCAGAATTGAATATTAAGAATAAAAAGTAACCACCGCACCACCTACCCCCAGTG ACTCTACATTTGGTTCTGGAACCGCTCTGTCCTAATATTCCACCTTTGTGCTCCTTGGGA TTATATGGGTTCTTCCTCAAATGGCCATGTCAGTCGGTATGGAGTTCCTCTAGGCTCTCA GACTCCTGAAAGTCTCACCACTGGTGTTTTCACCCTCATCTAGGAGTCTGCAACACTGTT ATAGACTGTAGGAAAAAGAGAAGGTAGGATAGCAGATAGTAACCATTCTCATCCCTGTTT ATTTTTAATTTGGGGGCATAAAGATGTACACAGGAACTTGTGTTATCACAGTGAGATGAG TCTGTATTTGGACAGCAAATTTGCGTGTATTTCTCACTGCTTTCTAAGAGAAAGCTTCAA AGGCTTTCCTTCATCTCAGTACTGTCCAGGTGAGAGAACTAAGGAAAACAGTGCTGAAAT ATACTTTGTCCTATAGTGGCTTCCATCTTCAGAGACTCAAGTGATTCTTTCAATGCCACC TTGGCATCCTTTTTAAAAGGACAGTGTCTCATCTTGAGCCAACAATGGTTGAAATTTCCT CTCCGACACTGCAGAGTGATGTGTGCTTAGTAACCTCAATTCTCTCATTAATTAAAAGTA TGTGGACTTTGGGGGACAAAGGAGGGAACTGTTCTGTATTTACCAATCTCAACCTCAATC CCCTTTCAAACAGGGGAGAAGCAAGCCAGCTGTTAGGTCGGTGATTTTATTTACTGTCAA AATATTTCTGATCTCTGTTTCCTCTGGTAATCCTGACGGAAGTTCTTATAACTCAGCATT TGTTTGCCTAGCCTTATAAATAAAGAGGGCTTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 150-350, gnl|bosTau2|chr11 (2400785-2400985) | |
| 150-350, gnl|canFam2|chr33 (25919485-25919649) | |
| 150-350, gnl|dasNov1|scaffold_6183 (28874-29034) | |
| 150-350, gnl|echTel1|scaffold_316262 (4747-4911) | |
| 150-350, gnl|galGal2|chrUn (159637318-159637160) | |
| 150-350, gnl|hg17|chr3 (120389302-120389466) | |
| 150-350, gnl|Hg17|chr3 (120389312-120389512) | |
| 150-350, gnl|loxAfr1|scaffold_221584 (382-218) | |
| 150-350, gnl|mm7|chr16 (38497321-38497157) | |
| 150-350, gnl|Mm7|chr16 (38497309-38497109) | |
| 150-350, gnl|monDom2|scaffold_24 (15644703-15644867) | |
| 150-350, gnl|oryCun1|scaffold_194466 (49883-49719) | |
| 150-350, gnl|panTro1|chr2 (122105317-122105481) | |
| 150-350, gnl|rheMac2|chr2 (39211234-39211398) | |
| 150-350, gnl|rn3|chr11 (63801542-63801706) | |
| 150-350, gnl|xenTro1|scaffold_159 (498601-498444) | |
| 546-729, gnl|bosTau2|chr11 (2406703-2406886) | |
| 546-729, gnl|canFam2|chr33 (25926008-25926183) | |
| 546-729, gnl|dasNov1|scaffold_6215 (66554-66379) | |
| 546-729, gnl|echTel1|scaffold_116213 (437-612) | |
| 546-729, gnl|hg17|chr3 (120395743-120395918) | |
| 546-729, gnl|Hg17|chr3 (120395753-120395936) | |
| 546-729, gnl|mm7|chr16 (38490178-38490003) | |
| 546-729, gnl|Mm7|chr16 (38490166-38489983) | |
| 546-729, gnl|oryCun1|scaffold_86847 (7294-7119) | |
| 546-729, gnl|panTro1|chr2 (122111774-122111949) | |
| 546-729, gnl|rheMac2|chr2 (39217752-39217927) | |
| 546-729, gnl|rn3|chr11 (63809817-63809992) | |
| 546-729, gnl|xenTro1|scaffold_159 (496579-496404) | |
| 813-1250, gnl|bosTau2|chr11 (2413017-2413452) | |
| 813-1250, gnl|Hg17|chr3 (120405454-120405884) | |
| 813-1250, gnl|Mm7|chr16 (38484160-38483680) | |
| 1253-1716, gnl|bosTau2|chr11 (2413719-2414188) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-350, gnl|bosTau2|chr11 (2400785-2400985) | |
| 150-350, gnl|canFam2|chr33 (25919485-25919649) | |
| 150-350, gnl|dasNov1|scaffold_6183 (28874-29034) | |
| 150-350, gnl|echTel1|scaffold_316262 (4747-4911) | |
| 150-350, gnl|galGal2|chrUn (159637318-159637160) | |
| 150-350, gnl|hg17|chr3 (120389302-120389466) | |
| 150-350, gnl|Hg17|chr3 (120389312-120389512) | |
| 150-350, gnl|loxAfr1|scaffold_221584 (382-218) | |
| 150-350, gnl|mm7|chr16 (38497321-38497157) | |
| 150-350, gnl|Mm7|chr16 (38497309-38497109) | |
| 150-350, gnl|monDom2|scaffold_24 (15644703-15644867) | |
| 150-350, gnl|oryCun1|scaffold_194466 (49883-49719) | |
| 150-350, gnl|panTro1|chr2 (122105317-122105481) | |
| 150-350, gnl|rheMac2|chr2 (39211234-39211398) | |
| 150-350, gnl|rn3|chr11 (63801542-63801706) | |
| 150-350, gnl|xenTro1|scaffold_159 (498601-498444) | |
| 546-729, gnl|bosTau2|chr11 (2406703-2406886) | |
| 546-729, gnl|canFam2|chr33 (25926008-25926183) | |
| 546-729, gnl|dasNov1|scaffold_6215 (66554-66379) | |
| 546-729, gnl|echTel1|scaffold_116213 (437-612) | |
| 546-729, gnl|hg17|chr3 (120395743-120395918) | |
| 546-729, gnl|Hg17|chr3 (120395753-120395936) | |
| 546-729, gnl|mm7|chr16 (38490178-38490003) | |
| 546-729, gnl|Mm7|chr16 (38490166-38489983) | |
| 546-729, gnl|oryCun1|scaffold_86847 (7294-7119) | |
| 546-729, gnl|panTro1|chr2 (122111774-122111949) | |
| 546-729, gnl|rheMac2|chr2 (39217752-39217927) | |
| 546-729, gnl|rn3|chr11 (63809817-63809992) | |
| 546-729, gnl|xenTro1|scaffold_159 (496579-496404) | |
| 813-1250, gnl|bosTau2|chr11 (2413017-2413452) | |
| 813-1250, gnl|Hg17|chr3 (120405454-120405884) | |
| 813-1250, gnl|Mm7|chr16 (38484160-38483680) | |
| 1253-1716, gnl|bosTau2|chr11 (2413719-2414188) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.994777) | |
| amn (0.835422) | |
| ova (0.258264) |