Non-Coding RNA Search

Ss1.1-Spl1-SPL01G110102.5

Sequence:


               
               AATGTCCCGTGGGAACAAGTGAGGCAATCCTGGGGCCAGCGGGTTTGAGTTATCACCTCT
TGTCTATCAGCAGAACCCGGCGAGGATACGCCTGCCAGCGCGGGAGGGAGAGCACTCCAC
CGCTCAAGAAAAGAGCGAGCGGGCAGGCAGCCGCTGGCCAGAACCGAACTGACTACAGGG
TCCTTACTCGGCTCTACTCCCCTCCAGGCCATGCTACAGGCTGAGCTCTGGGCGATCCCC
AGGTGAGGGCAGCGGCTCTGTCGGGAACTCCACCGCGGAAGAACTGGATAGATGCAGGGT
GGGGAAGAAAGAATGCTGCCCTCCCTGCTTCGCGGTAGCCCCCTGAGAGGCCGAATTTTT
GGCAGCAGCAGCAGAAAGCACAGTGTGGGCCGAGGAGGCGGTTCGAGCTGCTGGTAAAGT
CGCCCCACGACTGTTTTTCCGTAGTATGCGAGTCGACAAAACAGTCAGAGAACAGGGCTC
CCCATTACCATCTCCTTCGAGCTCTTTTCCCTTGCTACTCGGAGCTGATTTGTGCGAAAA
CATGCCTTGCACTTGTACTTGGAGGAACTGGAGGCAGTGGATTCGACCTTTAGCGGTGGT
CATCTACCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTCCCGTGGGAACAAGTGAGGCAATCCTGGGGCCAGCGGGTTTGAGTTATCACCTCT
TGTCTATCAGCAGAACCCGGCGAGGATACGCCTGCCAGCGCGGGAGGGAGAGCACTCCAC
CGCTCAAGAAAAGAGCGAGCGGGCAGGCAGCCGCTGGCCAGAACCGAACTGACTACAGGG
TCCTTACTCGGCTCTACTCCCCTCCAGGCCATGCTACAGGCTGAGCTCTGGGCGATCCCC
AGGTGAGGGCAGCGGCTCTGTCGGGAACTCCACCGCGGAAGAACTGGATAGATGCAGGGT
GGGGAAGAAAGAATGCTGCCCTCCCTGCTTCGCGGTAGCCCCCTGAGAGGCCGAATTTTT
GGCAGCAGCAGCAGAAAGCACAGTGTGGGCCGAGGAGGCGGTTCGAGCTGCTGGTAAAGT
CGCCCCACGACTGTTTTTCCGTAGTATGCGAGTCGACAAAACAGTCAGAGAACAGGGCTC
CCCATTACCATCTCCTTCGAGCTCTTTTCCCTTGCTACTCGGAGCTGATTTGTGCGAAAA
CATGCCTTGCACTTGTACTTGGAGGAACTGGAGGCAGTGGATTCGACCTTTAGCGGTGGT
CATCTACCTGGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-610, gnl|bosTau2|chr17 (5526353-5526970)
               

               
               3-610, gnl|Hg17|chr4 (148896182-148896781)
               

               
               3-610, gnl|Mm7|chr8 (76154322-76153800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-610, gnl|bosTau2|chr17 (5526353-5526970)
               

               
               3-610, gnl|Hg17|chr4 (148896182-148896781)
               

               
               3-610, gnl|Mm7|chr8 (76154322-76153800)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               spl (0.143184)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               spl (0.143184)
               

               
               ldo (0.0970026)

	3-610, gnl\|bosTau2\|chr17 (5526353-5526970)
	3-610, gnl\|Hg17\|chr4 (148896182-148896781)
	3-610, gnl\|Mm7\|chr8 (76154322-76153800)