Non-Coding RNA Search

Ss1.1-Spl1-SPL01G120087.5

Sequence:


               
               AATATTACCCAGAGAAAGAAAACCTTTATTTGAATCATCCGAGTGTTAATAATATGAATT
TCCTGTTCTTGTGTTATCCAAGATAAATTCTGTGGAATTATAAACATCTCAGTGGAGGGC
CTACATGATGTTATGACGGAAGATCCTGAAACAGGAACTTATAAAGACTGTATGTTAATG
TCTCATCTTGAAGAACCAAAAGTAACAGAAGATGAAGAGCCACCCACAGAACAGGATAAG
AGGAAAAAGATGCTGGCCCTGAAGGACCCTGTGCACACCGTGTCACTGCAGCAGTTCATC
TACGAGAAGCTCAAGGCCCAGCAGGAGCTGCTGGGAGAGCAAGGCTTCCAGTCCCTCATG
GAAACGGTGGACACGGAGATCGTCACCCAGCTACAGGAGTTTTTGCAGGGCTTCTGAGGG
CACCTGACGTGTGGCTGAGGAGCCCAGCCTGCCATCTGTGTGTGAAAGCCTGCTGAGATG
ATGCCTGAAAGAAAGATTGGAAGACTACACATTTTTTTTTTTTACCACAGAATTCAGCGA
ATAAATGTAAATCCTACATAACTAAAATCACAAACCTATTCCTCAAAACAATTTAATTTT
ATATTTATGAGGGGCCCTGTGTTTACTAGAGATAGATTTGACAATAGCTGCTTAGTTTCC
TGTTAAGAAACTGTTACCTTTTAATCATGTACTCTTAACACCTGAGAAGAAGAAGGTTAA
TGTCTGAGATGTTCTTCTGCAACCAAAATTAGTTAAATTTGGCTGCCTTATCCCTTTTTT
AAGCTCTTGAAACTACAAATTTGAAAAATGACAAAGCTCTTCAGATGATGCAATTAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATTACCCAGAGAAAGAAAACCTTTATTTGAATCATCCGAGTGTTAATAATATGAATT
TCCTGTTCTTGTGTTATCCAAGATAAATTCTGTGGAATTATAAACATCTCAGTGGAGGGC
CTACATGATGTTATGACGGAAGATCCTGAAACAGGAACTTATAAAGACTGTATGTTAATG
TCTCATCTTGAAGAACCAAAAGTAACAGAAGATGAAGAGCCACCCACAGAACAGGATAAG
AGGAAAAAGATGCTGGCCCTGAAGGACCCTGTGCACACCGTGTCACTGCAGCAGTTCATC
TACGAGAAGCTCAAGGCCCAGCAGGAGCTGCTGGGAGAGCAAGGCTTCCAGTCCCTCATG
GAAACGGTGGACACGGAGATCGTCACCCAGCTACAGGAGTTTTTGCAGGGCTTCTGAGGG
CACCTGACGTGTGGCTGAGGAGCCCAGCCTGCCATCTGTGTGTGAAAGCCTGCTGAGATG
ATGCCTGAAAGAAAGATTGGAAGACTACACATTTTTTTTTTTTACCACAGAATTCAGCGA
ATAAATGTAAATCCTACATAACTAAAATCACAAACCTATTCCTCAAAACAATTTAATTTT
ATATTTATGAGGGGCCCTGTGTTTACTAGAGATAGATTTGACAATAGCTGCTTAGTTTCC
TGTTAAGAAACTGTTACCTTTTAATCATGTACTCTTAACACCTGAGAAGAAGAAGGTTAA
TGTCTGAGATGTTCTTCTGCAACCAAAATTAGTTAAATTTGGCTGCCTTATCCCTTTTTT
AAGCTCTTGAAACTACAAATTTGAAAAATGACAAAGCTCTTCAGATGATGCAATTAAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12846624|dbj|BAB27241.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12846624|dbj|BAB27241.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               252-839, gnl|bosTau2|chr23 (7486845-7486234)
               

               
               252-839, gnl|Hg17|chr5 (61958736-61959361)
               

               
               252-839, gnl|Mm7|chr13 (103925685-103925069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               252-839, gnl|bosTau2|chr23 (7486845-7486234)
               

               
               252-839, gnl|Hg17|chr5 (61958736-61959361)
               

               
               252-839, gnl|Mm7|chr13 (103925685-103925069)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pla (0.267344)
               

               
               mas (0.210305)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               mas (0.210305)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	252-839, gnl\|bosTau2\|chr23 (7486845-7486234)
	252-839, gnl\|Hg17\|chr5 (61958736-61959361)
	252-839, gnl\|Mm7\|chr13 (103925685-103925069)

	pla (0.267344)
	mas (0.210305)
	spl (0.143184)
	ste (0.135208)
	sug (0.127291)
	tra (0.123092)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)