Non-Coding RNA Search

Ss1.1-Spl1-SPL01H010071.5

Sequence:


               
               GAAAGCATTTCACCACGCTACTTGGAATAGTTTCACATGACCCATTCTTGAGAGTCCCCG
GGAGTGTCCTGAGCAGTTGCCTACGTCCAAGGGGCCCAGCACCATCTGAACCTGCAGCCC
GCCAGTCCCCCTTCTGACCGCATTTGGTGTAACAGCACAGGTTCTGGGACACCTCTGGTT
ACTGGCCTCATAGGTCCTCTTGGGTAAGTTATCTAGTCGAGAACTAATCAAGAAGAAACC
ATGGCTTTAGTGGAGGAGCTGGTGATGGGCCTCGTTCTTTATCTCCTCTCCTGGTGTCTA
GCCCATGATAGTAACAGAAGCAGCGGGTGGGGTTTTTGGCCTGGGCCAAGGCTCTAAGCA
CTTGCTGAAGATGACAGCAGCCAGGAAACTCATTAGGCCTTGTCATTTCACTCCAGTGTC
TCAGGAACTCAGATTTAGTGTCTCCACAATACTCCAGAGGTGCCAGGAAGTCAGAAATGT
AGGCAGAATGTCAAGAGCAAGGCTGACTGCTCCCTCTAACGGAGCTTCTCACACAGACGG
CAGGCTCGGGGAGGGAGACCTTAACCCTAGTGCCTCCCTGGCCGCTGTTCTTGCCGCTGT
CCCAAGAGAAGTCTGCCGGCGAGGTGCGCCAGGATGAAGGTCAGGTAGTTAGAGAATCCA
GAGATAAAAGGTCATGGCACCCGTCTAGGTTTTAGCAGGCAGAGTGCCGACTTGCTTCCA
CCTCCCAGGGCAAGACTCCCTCTCTTTGTGTGTGACTTCTGCACCACTTCCAGGCTCCCA
TCCCCACTAATGTGAGTCACCCGGGAAAGGGGTCGTGGCTTTCTGGGCTTCCTTTCTTAG
CTGGTCTCAAGTTCCTCAGAGAAAAGGCCTTGGCTTCCCATTTCTTCCCCTCCCCTCCCC
CACCACAAAGCAAACATTCTCTGCATGTCACTTGCTCTGAGCAGGCAGATACAGAGAGGG
AGCCTGGAGTGGAGCCCCTTGGAAGCCAGCCAACAGAGCCTGACACATTCAAACTATATG
TCAGCCATAGAACAAAAAGAATATGGCGTTTTGAATCATGTGCATTTTCGTATACTTACT
TATATCTCAGATTCTTAGGAATTTGAAAAACTTCAGACTCCTTTTATTTATTCTCATCAT
TTGGAAAACCCCTAAGTAGTTTTTTAAATGCAGGATTGGGAGTTCCCGTCGTGGCTTAAC
GGTTAATGAATCTGACTGGCATCCATGAGGACGCAAGTTCCATCCCTGGCCTTGCTCAGT
GGGTTAAGGATCCGGCGTTGCCATGAGCTGTGATGTAGGTTGCAGACACGGCTCGGATCC
TGCGTTGCTGTGGCTCTGGTGTAGGCAGGCAGCTACAGCTCCGATTCGACCTCTAGCCTG
GGAACCTCCATATGCCTTGGGTGCGGCCCTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCATTTCACCACGCTACTTGGAATAGTTTCACATGACCCATTCTTGAGAGTCCCCG
GGAGTGTCCTGAGCAGTTGCCTACGTCCAAGGGGCCCAGCACCATCTGAACCTGCAGCCC
GCCAGTCCCCCTTCTGACCGCATTTGGTGTAACAGCACAGGTTCTGGGACACCTCTGGTT
ACTGGCCTCATAGGTCCTCTTGGGTAAGTTATCTAGTCGAGAACTAATCAAGAAGAAACC
ATGGCTTTAGTGGAGGAGCTGGTGATGGGCCTCGTTCTTTATCTCCTCTCCTGGTGTCTA
GCCCATGATAGTAACAGAAGCAGCGGGTGGGGTTTTTGGCCTGGGCCAAGGCTCTAAGCA
CTTGCTGAAGATGACAGCAGCCAGGAAACTCATTAGGCCTTGTCATTTCACTCCAGTGTC
TCAGGAACTCAGATTTAGTGTCTCCACAATACTCCAGAGGTGCCAGGAAGTCAGAAATGT
AGGCAGAATGTCAAGAGCAAGGCTGACTGCTCCCTCTAACGGAGCTTCTCACACAGACGG
CAGGCTCGGGGAGGGAGACCTTAACCCTAGTGCCTCCCTGGCCGCTGTTCTTGCCGCTGT
CCCAAGAGAAGTCTGCCGGCGAGGTGCGCCAGGATGAAGGTCAGGTAGTTAGAGAATCCA
GAGATAAAAGGTCATGGCACCCGTCTAGGTTTTAGCAGGCAGAGTGCCGACTTGCTTCCA
CCTCCCAGGGCAAGACTCCCTCTCTTTGTGTGTGACTTCTGCACCACTTCCAGGCTCCCA
TCCCCACTAATGTGAGTCACCCGGGAAAGGGGTCGTGGCTTTCTGGGCTTCCTTTCTTAG
CTGGTCTCAAGTTCCTCAGAGAAAAGGCCTTGGCTTCCCATTTCTTCCCCTCCCCTCCCC
CACCACAAAGCAAACATTCTCTGCATGTCACTTGCTCTGAGCAGGCAGATACAGAGAGGG
AGCCTGGAGTGGAGCCCCTTGGAAGCCAGCCAACAGAGCCTGACACATTCAAACTATATG
TCAGCCATAGAACAAAAAGAATATGGCGTTTTGAATCATGTGCATTTTCGTATACTTACT
TATATCTCAGATTCTTAGGAATTTGAAAAACTTCAGACTCCTTTTATTTATTCTCATCAT
TTGGAAAACCCCTAAGTAGTTTTTTAAATGCAGGATTGGGAGTTCCCGTCGTGGCTTAAC
GGTTAATGAATCTGACTGGCATCCATGAGGACGCAAGTTCCATCCCTGGCCTTGCTCAGT
GGGTTAAGGATCCGGCGTTGCCATGAGCTGTGATGTAGGTTGCAGACACGGCTCGGATCC
TGCGTTGCTGTGGCTCTGGTGTAGGCAGGCAGCTACAGCTCCGATTCGACCTCTAGCCTG
GGAACCTCCATATGCCTTGGGTGCGGCCCTAAAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               71-474, gnl|bosTau2|chr18 (749885-749479)
               

               
               71-474, gnl|Hg17|chr16 (73041868-73041426)
               


               
               638-1177, gnl|bosTau2|chr18 (748984-748435)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-474, gnl|bosTau2|chr18 (749885-749479)
               

               
               71-474, gnl|Hg17|chr16 (73041868-73041426)
               


               
               638-1177, gnl|bosTau2|chr18 (748984-748435)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               eru (0.360144)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	71-474, gnl\|bosTau2\|chr18 (749885-749479)
	71-474, gnl\|Hg17\|chr16 (73041868-73041426)

	638-1177, gnl\|bosTau2\|chr18 (748984-748435)

	eru (0.360144)
	hyp (0.285673)
	ece (0.229305)
	hea (0.204499)
	ill (0.175593)
	ste (0.135208)
	nmm (0.132802)
	bla (0.124347)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)