Ss1.1-Spl1-SPL01H030054.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAATGGCGGCCGAGCCGAGCAAGACAGAGATCCAAACTCTTTTTAAGAGGCTTCGCGC AATTCCAACCAACAAGGCCTGTTTTGACTGTGGCGCCAAGAATCCGAGTTGGGCTAGCAT CACGTATGGTGTTTTCTTGTGCATTGATTGCTCCGGGGTGCATCGCTCCCTGGGCGTCCA TCTCAGCTTCATCAGGTCCACAGAGTTGGATTCCAACTGGAACTGGTTCCAGCTGAGGTG TATGCAGGTCGGCGGGAATGCCAATGCGACAGCTTTCTTCCGCCAACATGGATGCACAGC CAATGATGCCAACACCAAATATAATAGCAGAGCTGCCCAGATGTACCGGGAAAAGATCCG GCAGCTGGGGAGTGCGGCCCTGGCTAGGCATGGCACTGATCTTTGGATAGACAATATGAG TAGTGCTCCCAGCCACTCCCCAGAGAAGAAGGACTCTGATTTCTTCTCCGAACACACTCA ACCCCCTGCCTGGAGTGCACCAGCTACTGATCTGTCTGAGACCCAGCAGCCAGCCCCATC TGCAGAGAGCAGTGGCCTGGCACAACCAGAGCACGGCCCCAACATGGACCTGCTTGGCAC CTCACCCAAAGCCTCTCTGGAACTGAAAACCTCCCTCATTGGCAAGAAGAAGCCAGCGGC AGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTAGGGGCCCAGAAGGTGAGCAGCCAGAG TTTCAGTGAGATTGAGCGGCAGGCACAGGTAGCCGAGAAGCTCCGTGAGCAGCAGGCAGC TGATGCCAAGAAGCAGGCTGAGGAGTCCATGGTTGCCTCCATGCGTCTGGCCTACCAGGA GCTCCAGATTGACCGTAAGAAGGAGGAGAAGAAGCTACAGAATCTGGAAGGGAAGAAGCG AGAGCAGGCAGAGAGGCTGGGCATGGGCTTGGTGTCCCGAAGCTCTGTTTCCCACTCGGT GCTGTCTGAGATGCAGGTGATCGAGCAGGAAACCCCAGTGAGTGCAAAATCCTCCCGCTC GCAGCTGGACTTGTTCGACGATGTTGGTACTTTCGCCTCTGGACCCCCAAAGTACAAGGA CAACCCCTTTTCCCTGGGGGAGAGTTTTGGTTCCCGCTGGGATGCAGATGCTGCCTGGGG TATGGACAGGATGGAGGAGAAGGAGCCAGAAGTGACCATCTCAAGCATCCGGCCCATTTC AGAAAGGGTCACAAACCGGAGGGAAGTGGAAAGCCGGAGCTCAGGCCTTGAGTCGAGTGA GGCACGGCAGAAATTTGCAGGAGCCAAAGCCATCTCATCTGACATGTTCTTTGGGCGGGA GGTAGATTCTGAGTATGAAGCCAGATCTCGGCTACAGCAGCTCTCAGGCAGCAGTGCCAT CAGCTCTTCAGACCTCTTTGGGGACATGGATGGAGCTCATGGAGCAGGTAGCGTATCTCT GGGGAATGTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAATGGCGGCCGAGCCGAGCAAGACAGAGATCCAAACTCTTTTTAAGAGGCTTCGCGC AATTCCAACCAACAAGGCCTGTTTTGACTGTGGCGCCAAGAATCCGAGTTGGGCTAGCAT CACGTATGGTGTTTTCTTGTGCATTGATTGCTCCGGGGTGCATCGCTCCCTGGGCGTCCA TCTCAGCTTCATCAGGTCCACAGAGTTGGATTCCAACTGGAACTGGTTCCAGCTGAGGTG TATGCAGGTCGGCGGGAATGCCAATGCGACAGCTTTCTTCCGCCAACATGGATGCACAGC CAATGATGCCAACACCAAATATAATAGCAGAGCTGCCCAGATGTACCGGGAAAAGATCCG GCAGCTGGGGAGTGCGGCCCTGGCTAGGCATGGCACTGATCTTTGGATAGACAATATGAG TAGTGCTCCCAGCCACTCCCCAGAGAAGAAGGACTCTGATTTCTTCTCCGAACACACTCA ACCCCCTGCCTGGAGTGCACCAGCTACTGATCTGTCTGAGACCCAGCAGCCAGCCCCATC TGCAGAGAGCAGTGGCCTGGCACAACCAGAGCACGGCCCCAACATGGACCTGCTTGGCAC CTCACCCAAAGCCTCTCTGGAACTGAAAACCTCCCTCATTGGCAAGAAGAAGCCAGCGGC AGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTAGGGGCCCAGAAGGTGAGCAGCCAGAG TTTCAGTGAGATTGAGCGGCAGGCACAGGTAGCCGAGAAGCTCCGTGAGCAGCAGGCAGC TGATGCCAAGAAGCAGGCTGAGGAGTCCATGGTTGCCTCCATGCGTCTGGCCTACCAGGA GCTCCAGATTGACCGTAAGAAGGAGGAGAAGAAGCTACAGAATCTGGAAGGGAAGAAGCG AGAGCAGGCAGAGAGGCTGGGCATGGGCTTGGTGTCCCGAAGCTCTGTTTCCCACTCGGT GCTGTCTGAGATGCAGGTGATCGAGCAGGAAACCCCAGTGAGTGCAAAATCCTCCCGCTC GCAGCTGGACTTGTTCGACGATGTTGGTACTTTCGCCTCTGGACCCCCAAAGTACAAGGA CAACCCCTTTTCCCTGGGGGAGAGTTTTGGTTCCCGCTGGGATGCAGATGCTGCCTGGGG TATGGACAGGATGGAGGAGAAGGAGCCAGAAGTGACCATCTCAAGCATCCGGCCCATTTC AGAAAGGGTCACAAACCGGAGGGAAGTGGAAAGCCGGAGCTCAGGCCTTGAGTCGAGTGA GGCACGGCAGAAATTTGCAGGAGCCAAAGCCATCTCATCTGACATGTTCTTTGGGCGGGA GGTAGATTCTGAGTATGAAGCCAGATCTCGGCTACAGCAGCTCTCAGGCAGCAGTGCCAT CAGCTCTTCAGACCTCTTTGGGGACATGGATGGAGCTCATGGAGCAGGTAGCGTATCTCT GGGGAATGTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 283-1207, - strand, RNAz p=0.743948 | |
| 673-791, + strand, RNAz p=0.883724 | |
| 1105-1196, - strand, RNAz p=0.574221 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 283-1207, - strand, RNAz p=0.743948 | |
| 673-791, + strand, RNAz p=0.883724 | |
| 1105-1196, - strand, RNAz p=0.574221 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 75-197, gnl|bosTau2|chr15 (49101965-49102087) | |
| 75-197, gnl|canFam2|chr18 (45434444-45434322) | |
| 75-197, gnl|danRer3|chr18 (47068501-47068625) | |
| 75-197, gnl|dasNov1|scaffold_159279 (4015-4124) | |
| 75-197, gnl|echTel1|scaffold_18004 (701-822) | |
| 75-197, gnl|fr1|chrUn (228199717-228199858) | |
| 75-197, gnl|galGal2|chr5 (20492225-20492103) | |
| 75-197, gnl|hg17|chr11 (47154642-47154783) | |
| 75-197, gnl|Hg17|chr11 (47154763-47154641) | |
| 75-197, gnl|loxAfr1|scaffold_19545 (8731-8853) | |
| 75-197, gnl|mm7|chr2 (91116409-91116287) | |
| 75-197, gnl|Mm7|chr2 (91116286-91116408) | |
| 75-197, gnl|monDom2|scaffold_33 (13065002-13065124) | |
| 75-197, gnl|oryCun1|scaffold_305 (11960-12079) | |
| 75-197, gnl|panTro1|chr9 (47672196-47672318) | |
| 75-197, gnl|rheMac2|chr14 (24946421-24946317) | |
| 75-197, gnl|rn3|chr3 (75516981-75516859) | |
| 75-197, gnl|tetNig1|chr19 (1666589-1666466) | |
| 75-197, gnl|xenTro1|scaffold_1009 (255970-256092) | |
| 268-400, gnl|bosTau2|chr15 (49103166-49103298) | |
| 268-400, gnl|canFam2|chr18 (45435694-45435533) | |
| 268-400, gnl|danRer3|chr18 (47068041-47068181) | |
| 268-400, gnl|dasNov1|scaffold_3846 (28188-28026) | |
| 268-400, gnl|echTel1|scaffold_236845 (504-342) | |
| 268-400, gnl|fr1|chrUn (228198918-228199080) | |
| 268-400, gnl|galGal2|chr5 (20493804-20493651) | |
| 268-400, gnl|hg17|chr11 (47153303-47153465) | |
| 268-400, gnl|Hg17|chr11 (47153441-47153309) | |
| 268-400, gnl|loxAfr1|scaffold_10400 (57039-57201) | |
| 268-400, gnl|mm7|chr2 (91117980-91117819) | |
| 268-400, gnl|Mm7|chr2 (91117840-91117972) | |
| 268-400, gnl|monDom2|scaffold_33 (13064193-13064356) | |
| 268-400, gnl|oryCun1|scaffold_196956 (27793-27633) | |
| 268-400, gnl|panTro1|chr9 (47670858-47671020) | |
| 268-400, gnl|rheMac2|chr14 (24947824-24947662) | |
| 268-400, gnl|rn3|chr3 (75518309-75518148) | |
| 268-400, gnl|tetNig1|chr19 (1667149-1667008) | |
| 268-400, gnl|xenTro1|scaffold_1009 (255518-255679) | |
| 673-811, gnl|bosTau2|chr15 (49106377-49106515) | |
| 673-811, gnl|canFam2|chr18 (45438868-45438714) | |
| 673-811, gnl|dasNov1|scaffold_3846 (31326-31171) | |
| 673-811, gnl|echTel1|scaffold_236845 (3242-3088) | |
| 673-811, gnl|fr1|chrUn (228196618-228196766) | |
| 673-811, gnl|galGal2|chr5 (20497616-20497462) | |
| 673-811, gnl|hg17|chr11 (47149785-47149939) | |
| 673-811, gnl|Hg17|chr11 (47149928-47149790) | |
| 673-811, gnl|loxAfr1|scaffold_19545 (4173-4327) | |
| 673-811, gnl|mm7|chr2 (91120793-91120639) | |
| 673-811, gnl|Mm7|chr2 (91120648-91120786) | |
| 673-811, gnl|monDom2|scaffold_33 (13061102-13061255) | |
| 673-811, gnl|oryCun1|scaffold_196956 (30785-30631) | |
| 673-811, gnl|panTro1|chr9 (47667694-47667848) | |
| 673-811, gnl|rheMac2|chr14 (24951013-24950859) | |
| 673-811, gnl|rn3|chr3 (75521155-75521001) | |
| 673-811, gnl|tetNig1|chr19 (1667988-1667819) | |
| 673-811, gnl|xenTro1|scaffold_1009 (253500-253654) | |
| 1066-1207, gnl|bosTau2|chr15 (49108753-49108894) | |
| 1066-1207, gnl|canFam2|chr18 (45441234-45441095) | |
| 1066-1207, gnl|dasNov1|scaffold_3846 (33899-33760) | |
| 1066-1207, gnl|echTel1|scaffold_236845 (4962-4823) | |
| 1066-1207, gnl|fr1|chrUn (228195944-228196101) | |
| 1066-1207, gnl|galGal2|chr5 (20499098-20498965) | |
| 1066-1207, gnl|hg17|chr11 (47146034-47146173) | |
| 1066-1207, gnl|Hg17|chr11 (47146176-47146035) | |
| 1066-1207, gnl|loxAfr1|scaffold_19545 (1486-1625) | |
| 1066-1207, gnl|mm7|chr2 (91124607-91124468) | |
| 1066-1207, gnl|Mm7|chr2 (91124463-91124604) | |
| 1066-1207, gnl|monDom2|scaffold_33 (13060039-13060178) | |
| 1066-1207, gnl|oryCun1|scaffold_196956 (35034-34895) | |
| 1066-1207, gnl|panTro1|chr9 (47663916-47664055) | |
| 1066-1207, gnl|rheMac2|chr14 (24955198-24955059) | |
| 1066-1207, gnl|rn3|chr3 (75526550-75526411) | |
| 1066-1207, gnl|tetNig1|chrUn_random (6569467-6569310) | |
| 1066-1207, gnl|xenTro1|scaffold_1009 (251573-251715) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-197, gnl|bosTau2|chr15 (49101965-49102087) | |
| 75-197, gnl|canFam2|chr18 (45434444-45434322) | |
| 75-197, gnl|danRer3|chr18 (47068501-47068625) | |
| 75-197, gnl|dasNov1|scaffold_159279 (4015-4124) | |
| 75-197, gnl|echTel1|scaffold_18004 (701-822) | |
| 75-197, gnl|fr1|chrUn (228199717-228199858) | |
| 75-197, gnl|galGal2|chr5 (20492225-20492103) | |
| 75-197, gnl|hg17|chr11 (47154642-47154783) | |
| 75-197, gnl|Hg17|chr11 (47154763-47154641) | |
| 75-197, gnl|loxAfr1|scaffold_19545 (8731-8853) | |
| 75-197, gnl|mm7|chr2 (91116409-91116287) | |
| 75-197, gnl|Mm7|chr2 (91116286-91116408) | |
| 75-197, gnl|monDom2|scaffold_33 (13065002-13065124) | |
| 75-197, gnl|oryCun1|scaffold_305 (11960-12079) | |
| 75-197, gnl|panTro1|chr9 (47672196-47672318) | |
| 75-197, gnl|rheMac2|chr14 (24946421-24946317) | |
| 75-197, gnl|rn3|chr3 (75516981-75516859) | |
| 75-197, gnl|tetNig1|chr19 (1666589-1666466) | |
| 75-197, gnl|xenTro1|scaffold_1009 (255970-256092) | |
| 268-400, gnl|bosTau2|chr15 (49103166-49103298) | |
| 268-400, gnl|canFam2|chr18 (45435694-45435533) | |
| 268-400, gnl|danRer3|chr18 (47068041-47068181) | |
| 268-400, gnl|dasNov1|scaffold_3846 (28188-28026) | |
| 268-400, gnl|echTel1|scaffold_236845 (504-342) | |
| 268-400, gnl|fr1|chrUn (228198918-228199080) | |
| 268-400, gnl|galGal2|chr5 (20493804-20493651) | |
| 268-400, gnl|hg17|chr11 (47153303-47153465) | |
| 268-400, gnl|Hg17|chr11 (47153441-47153309) | |
| 268-400, gnl|loxAfr1|scaffold_10400 (57039-57201) | |
| 268-400, gnl|mm7|chr2 (91117980-91117819) | |
| 268-400, gnl|Mm7|chr2 (91117840-91117972) | |
| 268-400, gnl|monDom2|scaffold_33 (13064193-13064356) | |
| 268-400, gnl|oryCun1|scaffold_196956 (27793-27633) | |
| 268-400, gnl|panTro1|chr9 (47670858-47671020) | |
| 268-400, gnl|rheMac2|chr14 (24947824-24947662) | |
| 268-400, gnl|rn3|chr3 (75518309-75518148) | |
| 268-400, gnl|tetNig1|chr19 (1667149-1667008) | |
| 268-400, gnl|xenTro1|scaffold_1009 (255518-255679) | |
| 673-811, gnl|bosTau2|chr15 (49106377-49106515) | |
| 673-811, gnl|canFam2|chr18 (45438868-45438714) | |
| 673-811, gnl|dasNov1|scaffold_3846 (31326-31171) | |
| 673-811, gnl|echTel1|scaffold_236845 (3242-3088) | |
| 673-811, gnl|fr1|chrUn (228196618-228196766) | |
| 673-811, gnl|galGal2|chr5 (20497616-20497462) | |
| 673-811, gnl|hg17|chr11 (47149785-47149939) | |
| 673-811, gnl|Hg17|chr11 (47149928-47149790) | |
| 673-811, gnl|loxAfr1|scaffold_19545 (4173-4327) | |
| 673-811, gnl|mm7|chr2 (91120793-91120639) | |
| 673-811, gnl|Mm7|chr2 (91120648-91120786) | |
| 673-811, gnl|monDom2|scaffold_33 (13061102-13061255) | |
| 673-811, gnl|oryCun1|scaffold_196956 (30785-30631) | |
| 673-811, gnl|panTro1|chr9 (47667694-47667848) | |
| 673-811, gnl|rheMac2|chr14 (24951013-24950859) | |
| 673-811, gnl|rn3|chr3 (75521155-75521001) | |
| 673-811, gnl|tetNig1|chr19 (1667988-1667819) | |
| 673-811, gnl|xenTro1|scaffold_1009 (253500-253654) | |
| 1066-1207, gnl|bosTau2|chr15 (49108753-49108894) | |
| 1066-1207, gnl|canFam2|chr18 (45441234-45441095) | |
| 1066-1207, gnl|dasNov1|scaffold_3846 (33899-33760) | |
| 1066-1207, gnl|echTel1|scaffold_236845 (4962-4823) | |
| 1066-1207, gnl|fr1|chrUn (228195944-228196101) | |
| 1066-1207, gnl|galGal2|chr5 (20499098-20498965) | |
| 1066-1207, gnl|hg17|chr11 (47146034-47146173) | |
| 1066-1207, gnl|Hg17|chr11 (47146176-47146035) | |
| 1066-1207, gnl|loxAfr1|scaffold_19545 (1486-1625) | |
| 1066-1207, gnl|mm7|chr2 (91124607-91124468) | |
| 1066-1207, gnl|Mm7|chr2 (91124463-91124604) | |
| 1066-1207, gnl|monDom2|scaffold_33 (13060039-13060178) | |
| 1066-1207, gnl|oryCun1|scaffold_196956 (35034-34895) | |
| 1066-1207, gnl|panTro1|chr9 (47663916-47664055) | |
| 1066-1207, gnl|rheMac2|chr14 (24955198-24955059) | |
| 1066-1207, gnl|rn3|chr3 (75526550-75526411) | |
| 1066-1207, gnl|tetNig1|chrUn_random (6569467-6569310) | |
| 1066-1207, gnl|xenTro1|scaffold_1009 (251573-251715) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| clu (0.119646) |