Ss1.1-Spl1-SPL01H030082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATCTGTAAAAAAGAGGAATAAAGTCTGCTATCTCATCTGGACATATTGTAAAGGTACC TTAAAAACTGTGAAAGGCTGTTTTTACTTGAAATTTGTTTTTCTGGTCTTAGAAATTGGA TCGGCTGGCTTCATTTTATGTGACTAGAAGTTTGAAAGCTATTCCATATCTCGATAGTAG TTCTCTTTCTCTGAACTTTGGCTTCTTTTCTGTAGGAAGATGAAGATCCTGGTAAAGGTG ATCAGGGTCGATCAGTTGACGCTGGTGAAGATAATGTGACAGAGCAGACCAATCACATTA TTATTCCCAGCTATGCATCATGGTTTGATTATAACTGTATTCATGTGATTGAAAGGCGTG CTCTTCCTGAGTTTTTCAATGGAAAAAACAAATCCAAGACTCCAGAGATATACTTGGCAT ATAGAAATTTTATGATCGACACATATCGCCTAAATCCCCAAGAATATTTAACTAGCACTG CCTGTCGGAGGAACTTGACTGGAGATGTGTGTGCTGTGATGAGAGTTCATGCCTTTTTAG AGCAGTGGGGGCTTGTTAATTACCAAGTGGATCCAGAAAGTCGACCGATGGCAATGGGGC CTCCTCCAACCCCTCATTTCAATGTCTTAGCTGACACTCCCTCTGGGCTGGTGCCTCTAC ATCTTCGATCACCTCAGGTTCCTGCTGCTCAGCAGATGTTAAATTTTCCTGAGAAGAACA AGGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCGTACTGACATTTATTCCAAGAAAA CATTAGCAAAGAGCAAAGGTGCTAGTGCTGGAAGAGAATGGACTGAACAGGAGACCCTTC TACTTCTTGAGGCCCTAGAGATGTATAAGGATGATTGGAACAAAGTGTCAGAACATGTTG GAAGTCGCACGCAAGATGAATGCATCCTCCACTTTTTGAGGCTTCCCATTGAGGACCCAT ACCTTGAGAATTCAGATGCTTCTCTAGGGCCCCTGGCCTACCAGCCTGTCCCCTTCAGTC AGTCGGGAAACCCAGTCATGAGCACTGTTGCTTTTTTGGCGTCTGTGGTGGATCCTCGTG TGGCATCTGCTGCAGCCAAAGCAGCTTTGGAGGAGTTTTCTCGAGTCCGGGAGGAGGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATCTGTAAAAAAGAGGAATAAAGTCTGCTATCTCATCTGGACATATTGTAAAGGTACC TTAAAAACTGTGAAAGGCTGTTTTTACTTGAAATTTGTTTTTCTGGTCTTAGAAATTGGA TCGGCTGGCTTCATTTTATGTGACTAGAAGTTTGAAAGCTATTCCATATCTCGATAGTAG TTCTCTTTCTCTGAACTTTGGCTTCTTTTCTGTAGGAAGATGAAGATCCTGGTAAAGGTG ATCAGGGTCGATCAGTTGACGCTGGTGAAGATAATGTGACAGAGCAGACCAATCACATTA TTATTCCCAGCTATGCATCATGGTTTGATTATAACTGTATTCATGTGATTGAAAGGCGTG CTCTTCCTGAGTTTTTCAATGGAAAAAACAAATCCAAGACTCCAGAGATATACTTGGCAT ATAGAAATTTTATGATCGACACATATCGCCTAAATCCCCAAGAATATTTAACTAGCACTG CCTGTCGGAGGAACTTGACTGGAGATGTGTGTGCTGTGATGAGAGTTCATGCCTTTTTAG AGCAGTGGGGGCTTGTTAATTACCAAGTGGATCCAGAAAGTCGACCGATGGCAATGGGGC CTCCTCCAACCCCTCATTTCAATGTCTTAGCTGACACTCCCTCTGGGCTGGTGCCTCTAC ATCTTCGATCACCTCAGGTTCCTGCTGCTCAGCAGATGTTAAATTTTCCTGAGAAGAACA AGGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCGTACTGACATTTATTCCAAGAAAA CATTAGCAAAGAGCAAAGGTGCTAGTGCTGGAAGAGAATGGACTGAACAGGAGACCCTTC TACTTCTTGAGGCCCTAGAGATGTATAAGGATGATTGGAACAAAGTGTCAGAACATGTTG GAAGTCGCACGCAAGATGAATGCATCCTCCACTTTTTGAGGCTTCCCATTGAGGACCCAT ACCTTGAGAATTCAGATGCTTCTCTAGGGCCCCTGGCCTACCAGCCTGTCCCCTTCAGTC AGTCGGGAAACCCAGTCATGAGCACTGTTGCTTTTTTGGCGTCTGTGGTGGATCCTCGTG TGGCATCTGCTGCAGCCAAAGCAGCTTTGGAGGAGTTTTCTCGAGTCCGGGAGGAGGTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 220-337, + strand, RNAz p=0.622822 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 220-337, + strand, RNAz p=0.622822 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-337, gnl|bosTau2|chr22 (40540197-40539871) | |
| 3-337, gnl|Hg17|chr3 (47702877-47702543) | |
| 493-679, gnl|bosTau2|chr1 (59120798-59120972) | |
| 493-679, gnl|Hg17|chr3 (47693278-47693121) | |
| 493-679, gnl|Mm7|chr9 (109883615-109883772) | |
| 850-1110, gnl|bosTau2|chr13 (10738229-10738489) | |
| 850-1110, gnl|canFam2|chr20 (44267868-44267605) | |
| 850-1110, gnl|danRer3|chr16 (33222595-33222332) | |
| 850-1110, gnl|dasNov1|scaffold_241123 (1444-1707) | |
| 850-1110, gnl|echTel1|scaffold_289282 (691-428) | |
| 850-1110, gnl|fr1|chrUn (149574885-149575148) | |
| 850-1110, gnl|galGal2|chr2 (391775-391512) | |
| 850-1110, gnl|hg17|chr3 (47678826-47679089) | |
| 850-1110, gnl|Hg17|chr3 (47679088-47678828) | |
| 850-1110, gnl|loxAfr1|scaffold_74904 (6363-6100) | |
| 850-1110, gnl|mm7|chr9 (109893274-109893011) | |
| 850-1110, gnl|Mm7|chr9 (109893010-109893270) | |
| 850-1110, gnl|monDom2|scaffold_5 (82450022-82450285) | |
| 850-1110, gnl|oryCun1|scaffold_93705 (3441-3181) | |
| 850-1110, gnl|panTro1|chr2 (49144271-49144534) | |
| 850-1110, gnl|rheMac2|chr2 (88855910-88855647) | |
| 850-1110, gnl|rn3|chr8 (114588501-114588238) | |
| 850-1110, gnl|tetNig1|chrUn_random (40917084-40916821) | |
| 850-1110, gnl|xenTro1|scaffold_1338 (18148-18411) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-337, gnl|bosTau2|chr22 (40540197-40539871) | |
| 3-337, gnl|Hg17|chr3 (47702877-47702543) | |
| 493-679, gnl|bosTau2|chr1 (59120798-59120972) | |
| 493-679, gnl|Hg17|chr3 (47693278-47693121) | |
| 493-679, gnl|Mm7|chr9 (109883615-109883772) | |
| 850-1110, gnl|bosTau2|chr13 (10738229-10738489) | |
| 850-1110, gnl|canFam2|chr20 (44267868-44267605) | |
| 850-1110, gnl|danRer3|chr16 (33222595-33222332) | |
| 850-1110, gnl|dasNov1|scaffold_241123 (1444-1707) | |
| 850-1110, gnl|echTel1|scaffold_289282 (691-428) | |
| 850-1110, gnl|fr1|chrUn (149574885-149575148) | |
| 850-1110, gnl|galGal2|chr2 (391775-391512) | |
| 850-1110, gnl|hg17|chr3 (47678826-47679089) | |
| 850-1110, gnl|Hg17|chr3 (47679088-47678828) | |
| 850-1110, gnl|loxAfr1|scaffold_74904 (6363-6100) | |
| 850-1110, gnl|mm7|chr9 (109893274-109893011) | |
| 850-1110, gnl|Mm7|chr9 (109893010-109893270) | |
| 850-1110, gnl|monDom2|scaffold_5 (82450022-82450285) | |
| 850-1110, gnl|oryCun1|scaffold_93705 (3441-3181) | |
| 850-1110, gnl|panTro1|chr2 (49144271-49144534) | |
| 850-1110, gnl|rheMac2|chr2 (88855910-88855647) | |
| 850-1110, gnl|rn3|chr8 (114588501-114588238) | |
| 850-1110, gnl|tetNig1|chrUn_random (40917084-40916821) | |
| 850-1110, gnl|xenTro1|scaffold_1338 (18148-18411) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) |