Non-Coding RNA Search

Ss1.1-Spl1-SPL01H030096.5

Sequence:


               
               CTCCCTCTCCCTCCCCGCGCTTCCTCTCCGCCCACCGCGCTCCAGCCGCCCGGTCGTAGC
CCGCGCTGTCCTCCGCCCCCCGGAGCCGCCGCGCCTGCCCGCCCGCGCCCAGCCATGGGG
GACCTGCCGGGCCTCGTGCGCCTCTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCG
GTCTTCTACAAGGTAGACGGGCAGCGCTTCGGCCAAAACCGCACCATCAAGCTGCTCACC
GGCTCCTCCTACAAGGTGGAAGTGAAGATCAAGCCTACCACGCTGCAGGTCGAGAACATT
TCCATTGGTGGTGTGGTGGTCCCACTGGAGCTGAAGTCTAAAGAGCCTGATGGGGACAGA
ATCGTATATACGGGCACATATGACACAGAAGGTGTGGCCCCAACCAAGAGTGGCGAACGG
CAACCCATCCAGATCACCATGCCGTTCACTGACATTGGAACCTTCGAGACAATGTGGCAG
GTCAAGTTCTACAATTACCACAAGCGGGATCACTGCCAGTGGGGAAGCCCCTTCTCTGTC
ATCGAGTACGAATGCAAGCCCAACGAGACCCGCAGTCTCATGTGGGTGAACAAGGAGTCC
TTCCTCTGAAGCTGGCTCTGTGATGCTGCTGGACAATCTCTTGAGAAATCCACTTTTAGA
TAACCCAGCACAAGCCGTCACCGAGGCGCCCCGATTATTTTGAAAGTGTCATTCCCCTCC
GAGGCAATGTCCCTGACATAAAAGATCGCGATGTACCCTGCCCAAGAGGCTCCCTCGCTG
TGTTTTGTGTTGGTGTTCCTGCCTCCAGTTGTTCTTGATCATGCCGTGACCCCTTGTGAA
GAGCTCTGTGGAGCCCACGGGCCGTGTCCTGCACTTAACATCTCTGCTGAGTGACTGTGC
TGTTGTGCTTTCAAGTTGAGTGATTCCCTCTTTGTTTTGGTTAAATGTTAAATAAAAAAT
AACAAATTGCGTGGGTTCCACCCCAAGTGTGCTATGGTAACAGGTTAACATGGGGTGTTT
TCCAGCCCTCAGAACAGGCTTTGTGAAAATGTGATGCAAACAGCCATCAGTGGGACTCAA
GTGTTGTGTTTTCTATAAACAACTGGACCTTTTCAGGGAAGGATTAATGACAAGAAAAGG
ACAAAGATTTAAGAAGCAGTTATAATGTATTTAAACCCATGTATCGTAAGGCATTGGGCT
GTGGCCTAGTGGAAGTGGGAAAGAGCCTGGTGTGGCCCACTGTTAAATGAAGTGACCAAA
GTTACAGGGTTACCTCTTTGGCAAGTGACTGTGGTGTCCAGAAAGGCACAGGGATGACCT
CCCTACATTCCCCTTCACTTGAACTTTGTAAAACTGTGTGTGGAACTGTCATCAACTTTT
GATATTTCTTAATAAAGTTAATGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTCTCCCTCCCCGCGCTTCCTCTCCGCCCACCGCGCTCCAGCCGCCCGGTCGTAGC
CCGCGCTGTCCTCCGCCCCCCGGAGCCGCCGCGCCTGCCCGCCCGCGCCCAGCCATGGGG
GACCTGCCGGGCCTCGTGCGCCTCTCCATCGCGCTGCGCATCCAGCCCAACGACGGCCCG
GTCTTCTACAAGGTAGACGGGCAGCGCTTCGGCCAAAACCGCACCATCAAGCTGCTCACC
GGCTCCTCCTACAAGGTGGAAGTGAAGATCAAGCCTACCACGCTGCAGGTCGAGAACATT
TCCATTGGTGGTGTGGTGGTCCCACTGGAGCTGAAGTCTAAAGAGCCTGATGGGGACAGA
ATCGTATATACGGGCACATATGACACAGAAGGTGTGGCCCCAACCAAGAGTGGCGAACGG
CAACCCATCCAGATCACCATGCCGTTCACTGACATTGGAACCTTCGAGACAATGTGGCAG
GTCAAGTTCTACAATTACCACAAGCGGGATCACTGCCAGTGGGGAAGCCCCTTCTCTGTC
ATCGAGTACGAATGCAAGCCCAACGAGACCCGCAGTCTCATGTGGGTGAACAAGGAGTCC
TTCCTCTGAAGCTGGCTCTGTGATGCTGCTGGACAATCTCTTGAGAAATCCACTTTTAGA
TAACCCAGCACAAGCCGTCACCGAGGCGCCCCGATTATTTTGAAAGTGTCATTCCCCTCC
GAGGCAATGTCCCTGACATAAAAGATCGCGATGTACCCTGCCCAAGAGGCTCCCTCGCTG
TGTTTTGTGTTGGTGTTCCTGCCTCCAGTTGTTCTTGATCATGCCGTGACCCCTTGTGAA
GAGCTCTGTGGAGCCCACGGGCCGTGTCCTGCACTTAACATCTCTGCTGAGTGACTGTGC
TGTTGTGCTTTCAAGTTGAGTGATTCCCTCTTTGTTTTGGTTAAATGTTAAATAAAAAAT
AACAAATTGCGTGGGTTCCACCCCAAGTGTGCTATGGTAACAGGTTAACATGGGGTGTTT
TCCAGCCCTCAGAACAGGCTTTGTGAAAATGTGATGCAAACAGCCATCAGTGGGACTCAA
GTGTTGTGTTTTCTATAAACAACTGGACCTTTTCAGGGAAGGATTAATGACAAGAAAAGG
ACAAAGATTTAAGAAGCAGTTATAATGTATTTAAACCCATGTATCGTAAGGCATTGGGCT
GTGGCCTAGTGGAAGTGGGAAAGAGCCTGGTGTGGCCCACTGTTAAATGAAGTGACCAAA
GTTACAGGGTTACCTCTTTGGCAAGTGACTGTGGTGTCCAGAAAGGCACAGGGATGACCT
CCCTACATTCCCCTTCACTTGAACTTTGTAAAACTGTGTGTGGAACTGTCATCAACTTTT
GATATTTCTTAATAAAGTTAATGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823968|ref|XP_588942.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823968|ref|XP_588942.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-294, gnl|bosTau2|chr11 (48281675-48281382)
               

               
               1-294, gnl|Hg17|chr2 (68458294-68458004)
               

               
               1-294, gnl|Mm7|chr11 (17004084-17004358)
               


               
               688-1410, gnl|bosTau2|chr11 (48258387-48257681)
               

               
               688-1410, gnl|Hg17|chr2 (68432519-68431793)
               

               
               688-1410, gnl|Mm7|chr11 (17030687-17031381)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-294, gnl|bosTau2|chr11 (48281675-48281382)
               

               
               1-294, gnl|Hg17|chr2 (68458294-68458004)
               

               
               1-294, gnl|Mm7|chr11 (17004084-17004358)
               


               
               688-1410, gnl|bosTau2|chr11 (48258387-48257681)
               

               
               688-1410, gnl|Hg17|chr2 (68432519-68431793)
               

               
               688-1410, gnl|Mm7|chr11 (17030687-17031381)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fbs (0.526039)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               cut (0.339847)
               

               
               fco (0.314416)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-294, gnl\|bosTau2\|chr11 (48281675-48281382)
	1-294, gnl\|Hg17\|chr2 (68458294-68458004)
	1-294, gnl\|Mm7\|chr11 (17004084-17004358)

	688-1410, gnl\|bosTau2\|chr11 (48258387-48257681)
	688-1410, gnl\|Hg17\|chr2 (68432519-68431793)
	688-1410, gnl\|Mm7\|chr11 (17030687-17031381)

	fbs (0.526039)
	cut (0.339847)
	fco (0.314416)
	cga (0.279096)
	cbe (0.239234)
	pgl (0.236967)
	ebs (0.236602)
	ece (0.229305)
	nlu (0.191681)
	nco (0.161734)
	isp (0.150376)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)