Non-Coding RNA Search

Ss1.1-Spl1-SPL01H040076.5

Sequence:


               
               GCGGCCGCNCACCCCCNGAGGTGCTGATGGATGTAGGGCTAAAGCGAGAGGTGACCCTGG
AGCTGAGGGGGGATGGGTCTGTGCCCAACCTGACAGTGTGCGTGGCAGCCTACACCGCCG
CTGGGGATGGACCCTGGAGCCTCCCTGTGCCCCTGGAGCCCTGGCGCCCAGGACAAGGAC
AGCCAATCCACCAGCTGGTGAGTGAACCCCCAGCCCCTGCCTTCTCGTGGCCCTGGTGGT
ATGTACTTCTGGGAGCAGTTGTGGCCGCTGCCTGTGTCCTCATCCTGACCCTGTTCCTCG
TCCATCGGCGGAAGAAGGAGACCCGCTATGGAGAGGTGTTCGAACCCGCAGTGGAGAGGG
GCGAGCTGGTGGTCAGGTATCGTGTTCGCAAGTCCTACAGTCGTCGGACCACTGAAGCCA
CCTTGAACAGCCTGGGCATCAGCGAAGAGCTGAAAGAGAAGCTGCGGGATGTGATGGTGG
ACCGGCATAAGGTGGCCCTGGGGAAAACCTGGGAGAAGGAGAGTTTGGAGCTGTGATGGA
GGGCCAGCTCAATCAGGATGACTCATCCTCAAGGTGGCCGTGAAGACGATGAAGATTGCC
ATCTGCACAAGGTCGGAGCTGGAAGATTTCCTGAGCGAAGCCGTCTGCATGAAGGAATTC
GACCACCCCAACGTCATGAGGCTCATCGGCGTCTGTTTCCAGGGTTCCGAACGAGAGGGC
TTCCCGGCCCCTGTGGTCATCTTACCCTTCATGAAACACGGAGACCTACACAGTTTCCTT
CTTTATTCCCGGCTCGGGGACCAGCCAGTGTTCCTGCCCACTCAGATGCTGGTGAAGTTC
ATGGCAGACATCGCCAGTGGCATGGAGTATCTGAGTACCAAGAGGTTCATACACCGGGAC
CTGGCTGCCAGGAACTGCATGCTGAACGAGAACATGTCGGTGTGTGTGGCCGACTTTGGG
CTTTCGAAGAAGATCTATAACGGGGACTACTACCGCCAGGGACGCATTGCCAAGATGCCA
GTCAAGTGGATCGCCATCGAGAGCCTGGCTGACCGCGTCTACACCAGCAAGAGCGACGTG
TGGTCCTTTGGGGTGACAATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCNCACCCCCNGAGGTGCTGATGGATGTAGGGCTAAAGCGAGAGGTGACCCTGG
AGCTGAGGGGGGATGGGTCTGTGCCCAACCTGACAGTGTGCGTGGCAGCCTACACCGCCG
CTGGGGATGGACCCTGGAGCCTCCCTGTGCCCCTGGAGCCCTGGCGCCCAGGACAAGGAC
AGCCAATCCACCAGCTGGTGAGTGAACCCCCAGCCCCTGCCTTCTCGTGGCCCTGGTGGT
ATGTACTTCTGGGAGCAGTTGTGGCCGCTGCCTGTGTCCTCATCCTGACCCTGTTCCTCG
TCCATCGGCGGAAGAAGGAGACCCGCTATGGAGAGGTGTTCGAACCCGCAGTGGAGAGGG
GCGAGCTGGTGGTCAGGTATCGTGTTCGCAAGTCCTACAGTCGTCGGACCACTGAAGCCA
CCTTGAACAGCCTGGGCATCAGCGAAGAGCTGAAAGAGAAGCTGCGGGATGTGATGGTGG
ACCGGCATAAGGTGGCCCTGGGGAAAACCTGGGAGAAGGAGAGTTTGGAGCTGTGATGGA
GGGCCAGCTCAATCAGGATGACTCATCCTCAAGGTGGCCGTGAAGACGATGAAGATTGCC
ATCTGCACAAGGTCGGAGCTGGAAGATTTCCTGAGCGAAGCCGTCTGCATGAAGGAATTC
GACCACCCCAACGTCATGAGGCTCATCGGCGTCTGTTTCCAGGGTTCCGAACGAGAGGGC
TTCCCGGCCCCTGTGGTCATCTTACCCTTCATGAAACACGGAGACCTACACAGTTTCCTT
CTTTATTCCCGGCTCGGGGACCAGCCAGTGTTCCTGCCCACTCAGATGCTGGTGAAGTTC
ATGGCAGACATCGCCAGTGGCATGGAGTATCTGAGTACCAAGAGGTTCATACACCGGGAC
CTGGCTGCCAGGAACTGCATGCTGAACGAGAACATGTCGGTGTGTGTGGCCGACTTTGGG
CTTTCGAAGAAGATCTATAACGGGGACTACTACCGCCAGGGACGCATTGCCAAGATGCCA
GTCAAGTGGATCGCCATCGAGAGCCTGGCTGACCGCGTCTACACCAGCAAGAGCGACGTG
TGGTCCTTTGGGGTGACAATGTGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               688-810, gnl|bosTau2|chr18 (45743542-45743664)
               

               
               688-810, gnl|Hg17|chr19 (46450590-46450712)
               

               
               688-810, gnl|Mm7|chr7 (22538097-22537975)
               


               
               917-1079, gnl|bosTau2|chr18 (45747600-45747762)
               

               
               917-1079, gnl|Hg17|chr19 (46454193-46454355)
               

               
               917-1079, gnl|Mm7|chr7 (22535600-22535438)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               688-810, gnl|bosTau2|chr18 (45743542-45743664)
               

               
               688-810, gnl|Hg17|chr19 (46450590-46450712)
               

               
               688-810, gnl|Mm7|chr7 (22538097-22537975)
               


               
               917-1079, gnl|bosTau2|chr18 (45747600-45747762)
               

               
               917-1079, gnl|Hg17|chr19 (46454193-46454355)
               

               
               917-1079, gnl|Mm7|chr7 (22535600-22535438)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               cly (0.120642)

	688-810, gnl\|bosTau2\|chr18 (45743542-45743664)
	688-810, gnl\|Hg17\|chr19 (46450590-46450712)
	688-810, gnl\|Mm7\|chr7 (22538097-22537975)

	917-1079, gnl\|bosTau2\|chr18 (45747600-45747762)
	917-1079, gnl\|Hg17\|chr19 (46454193-46454355)
	917-1079, gnl\|Mm7\|chr7 (22535600-22535438)