Ss1.1-Spl1-SPL01H040084.5
|
GGACTGGGAGGCGGACGCCCACCTGAACGAGGAATTAGAAGAACATGTGTTTTGAATGTT
TTCTGGTCCCGCCTCAGATCGCGGAGGGAATGGCTTACATCGAGAGAAAGAACTACATTC
ACCGGGACCTTCGAGCCGCCAACGTCCTGGTCTCCGAGTCCCTCATGTGCAAAATCGCAG
ATTTTGGCCTCGCCCGAGTCATTGAAGATAACGAGTACACAGCGAGGGAAGGTGCTAAAT
TCCCCATTAAGTGGACGGCTCCAGAGGCCATCAACTTCGGATGCTTCACTATTAAATCTG
ACGTGTGGTCCTTCGGAATCCTGCTGTATGAGATCGTCACCTACGGGAAGATTCCCTACC
CAGGGAGAACTAACGCGGACGTGATGGCCGCCCTGTCGCAGGGCTACAGGATGCCCCGTA
TGGAGAACTGCCCCGATGAGCTCTATGACATCATGAAGATGTGCTGGAAAGAGAAGGCGG
AGGAGAGGCCCACCTTCGACTACCTGCAGAGCGTCCTGGACGACTTCTACACGGCCACCG
AGGGCCAGTACCAGCAGCAGCCCTAGCGCGGGGACTCGGCCACTCCCGGGATGGCGGCCT
CCTCCACCAGGAACAGAGAGCAGCCCCTGGTCCTCGGTTCATTTCCTGAGCTGGGGGCAC
CTGCCGTCCCTGCTTCCCGCACGTGAGGTGAAGCTACTCAGGAAGAACTCTCTCCACGGG
AAAGGATTCTCCTCTCGGGCCAGGGCCTGCCAGGGTGCCCCCCGAGAGCAGACTGGCTCG
GCTGGACCCACATCTGGGCACAGGCTTCTGAGGAGAAAGCACCAGACCCACCCAAGGGCG
CCCCGGTCAGCTCTTGTTGACAAGAGGCTGTGCCCCCACCCAGGTTCAGAGACCCGTCCA
GTAAACCCCCGTTAGGAGAGAACTAAACTCACTGATCAGCATCAAATAACCTGATACCTT
TTATGACACTTTTTTGTATTTTCTCTGTGCTTTAGCTTATGTGTTAAAAACAAAAAATTA
CTAATCTCTGTTAGAGTTTGCAAAAGTGACGTCCGGAGCTTTGGTGTCTTTCCCAGATCT
CAGTCCGAGACTGTTAAACGTTGCCCATGGCAGAGACCAGCCTGGAACCCCAGCCGGGAA
GAAGCGTCCTCTGCAAGTGGGCAGGGCTGCCGTGCTAAGTGACACGGGCGCCCCCACCCC
CCACCCCAAGCCACTGGGGCCTCTGCCCAGACCCCCATGACCCTGTCCCGGAAAAGAGCT
GCAGAAACTACTCGGCCGTTAAGAAGAAAGATTTTTAAAGGTCCAGCTTTTCAATTCCAC
ACTTTTCCGTATATGGACTTTTTTGGACCATGTAGTTTGGAAAATTTTAATCCCTGCAGA
ACATTCTAGGACCTTACAAAACATGAGCATTTTCTTTATTGCTTCCAGTGATTTTGAACA
TTATTTTAATGATCAAATATTAATTTTAGTCATACTCTAGAAAGTCAACGTGCCATATTT
GGGGGCACTTTTGTGATTCAGCAATCTTTTCTAAATTGTGTGACGTGTATGTGAGACTAT
TTATATGAGGAAATGAAGGGAAAGAAATGAGTAGGGGGCTCGTTACCGAGCCCCTGGAGC
AGGGACCACGAGAGGTTTTTCTATTACATTTTTCTACTCTAAGCTTTGAATGGAGATGCT
CTGTCACATGTTCCACTTATGCTTTGTGTATATACCTAATATTTCTATTTTTGATTTTAT
TTTAATACACCTGGCCCAATAACATCTCAAGCTTCTCATTGGTGTTGAGTATTTCCCATG
GTTATCTATGTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGACTGGGAGGCGGACGCCCACCTGAACGAGGAATTAGAAGAACATGTGTTTTGAATGTT
TTCTGGTCCCGCCTCAGATCGCGGAGGGAATGGCTTACATCGAGAGAAAGAACTACATTC
ACCGGGACCTTCGAGCCGCCAACGTCCTGGTCTCCGAGTCCCTCATGTGCAAAATCGCAG
ATTTTGGCCTCGCCCGAGTCATTGAAGATAACGAGTACACAGCGAGGGAAGGTGCTAAAT
TCCCCATTAAGTGGACGGCTCCAGAGGCCATCAACTTCGGATGCTTCACTATTAAATCTG
ACGTGTGGTCCTTCGGAATCCTGCTGTATGAGATCGTCACCTACGGGAAGATTCCCTACC
CAGGGAGAACTAACGCGGACGTGATGGCCGCCCTGTCGCAGGGCTACAGGATGCCCCGTA
TGGAGAACTGCCCCGATGAGCTCTATGACATCATGAAGATGTGCTGGAAAGAGAAGGCGG
AGGAGAGGCCCACCTTCGACTACCTGCAGAGCGTCCTGGACGACTTCTACACGGCCACCG
AGGGCCAGTACCAGCAGCAGCCCTAGCGCGGGGACTCGGCCACTCCCGGGATGGCGGCCT
CCTCCACCAGGAACAGAGAGCAGCCCCTGGTCCTCGGTTCATTTCCTGAGCTGGGGGCAC
CTGCCGTCCCTGCTTCCCGCACGTGAGGTGAAGCTACTCAGGAAGAACTCTCTCCACGGG
AAAGGATTCTCCTCTCGGGCCAGGGCCTGCCAGGGTGCCCCCCGAGAGCAGACTGGCTCG
GCTGGACCCACATCTGGGCACAGGCTTCTGAGGAGAAAGCACCAGACCCACCCAAGGGCG
CCCCGGTCAGCTCTTGTTGACAAGAGGCTGTGCCCCCACCCAGGTTCAGAGACCCGTCCA
GTAAACCCCCGTTAGGAGAGAACTAAACTCACTGATCAGCATCAAATAACCTGATACCTT
TTATGACACTTTTTTGTATTTTCTCTGTGCTTTAGCTTATGTGTTAAAAACAAAAAATTA
CTAATCTCTGTTAGAGTTTGCAAAAGTGACGTCCGGAGCTTTGGTGTCTTTCCCAGATCT
CAGTCCGAGACTGTTAAACGTTGCCCATGGCAGAGACCAGCCTGGAACCCCAGCCGGGAA
GAAGCGTCCTCTGCAAGTGGGCAGGGCTGCCGTGCTAAGTGACACGGGCGCCCCCACCCC
CCACCCCAAGCCACTGGGGCCTCTGCCCAGACCCCCATGACCCTGTCCCGGAAAAGAGCT
GCAGAAACTACTCGGCCGTTAAGAAGAAAGATTTTTAAAGGTCCAGCTTTTCAATTCCAC
ACTTTTCCGTATATGGACTTTTTTGGACCATGTAGTTTGGAAAATTTTAATCCCTGCAGA
ACATTCTAGGACCTTACAAAACATGAGCATTTTCTTTATTGCTTCCAGTGATTTTGAACA
TTATTTTAATGATCAAATATTAATTTTAGTCATACTCTAGAAAGTCAACGTGCCATATTT
GGGGGCACTTTTGTGATTCAGCAATCTTTTCTAAATTGTGTGACGTGTATGTGAGACTAT
TTATATGAGGAAATGAAGGGAAAGAAATGAGTAGGGGGCTCGTTACCGAGCCCCTGGAGC
AGGGACCACGAGAGGTTTTTCTATTACATTTTTCTACTCTAAGCTTTGAATGGAGATGCT
CTGTCACATGTTCCACTTATGCTTTGTGTATATACCTAATATTTCTATTTTTGATTTTAT
TTTAATACACCTGGCCCAATAACATCTCAAGCTTCTCATTGGTGTTGAGTATTTCCCATG
GTTATCTATGTC
|
|
75-233, gnl|bosTau2|chr14 (11695328-11695170) |
|
75-233, gnl|Hg17|chr8 (57073456-57073614) |
|
75-233, gnl|Mm7|chr4 (3708057-3708215) |
| |
|
360-1084, gnl|bosTau2|chr14 (11683700-11682989) |
|
360-1084, gnl|Hg17|chr8 (57085017-57085767) |
|
360-1084, gnl|Mm7|chr4 (3716885-3717544) |
| |
|
1247-1733, gnl|bosTau2|chr14 (11682818-11682325) |
|
1247-1733, gnl|canFam2|chr29 (10452816-10453248) |
|
1247-1733, gnl|dasNov1|scaffold_137741 (4299-3805) |
|
1247-1733, gnl|echTel1|scaffold_102955 (1293-1720) |
|
1247-1733, gnl|hg17|chr8 (57085942-57086388) |
|
1247-1733, gnl|Hg17|chr8 (57085959-57086387) |
|
1247-1733, gnl|loxAfr1|scaffold_15203 (18141-17722) |
|
1247-1733, gnl|mm7|chr4 (3717699-3718121) |
|
1247-1733, gnl|monDom2|scaffold_4 (108053724-108053292) |
|
1247-1733, gnl|oryCun1|scaffold_213410 (3049-2615) |
|
1247-1733, gnl|panTro1|chr7 (58794978-58795424) |
|
1247-1733, gnl|rheMac2|chr8 (58619677-58620123) |
|
1247-1733, gnl|rn3|chr5 (17053516-17053914) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
75-233, gnl|bosTau2|chr14 (11695328-11695170) |
|
75-233, gnl|Hg17|chr8 (57073456-57073614) |
|
75-233, gnl|Mm7|chr4 (3708057-3708215) |
| |
|
360-1084, gnl|bosTau2|chr14 (11683700-11682989) |
|
360-1084, gnl|Hg17|chr8 (57085017-57085767) |
|
360-1084, gnl|Mm7|chr4 (3716885-3717544) |
| |
|
1247-1733, gnl|bosTau2|chr14 (11682818-11682325) |
|
1247-1733, gnl|canFam2|chr29 (10452816-10453248) |
|
1247-1733, gnl|dasNov1|scaffold_137741 (4299-3805) |
|
1247-1733, gnl|echTel1|scaffold_102955 (1293-1720) |
|
1247-1733, gnl|hg17|chr8 (57085942-57086388) |
|
1247-1733, gnl|Hg17|chr8 (57085959-57086387) |
|
1247-1733, gnl|loxAfr1|scaffold_15203 (18141-17722) |
|
1247-1733, gnl|mm7|chr4 (3717699-3718121) |
|
1247-1733, gnl|monDom2|scaffold_4 (108053724-108053292) |
|
1247-1733, gnl|oryCun1|scaffold_213410 (3049-2615) |
|
1247-1733, gnl|panTro1|chr7 (58794978-58795424) |
|
1247-1733, gnl|rheMac2|chr8 (58619677-58620123) |
|
1247-1733, gnl|rn3|chr5 (17053516-17053914) |
|
duo (0.518403) |
|
elu (0.385356) |
|
cbl (0.344392) |
|
csp (0.322373) |
|
cag (0.302389) |
|
spl (0.286369) |
|
pty (0.285429) |
|
cst (0.280073) |
|
jej (0.197844) |
|
col (0.195008) |
|
sin (0.174948) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
bla (0.124347) |
|
duo (0.518403) |
|
elu (0.385356) |
|
cbl (0.344392) |
|
csp (0.322373) |
|
cag (0.302389) |
|
spl (0.286369) |
|
pty (0.285429) |
|
cst (0.280073) |
|
jej (0.197844) |
|
col (0.195008) |
|
sin (0.174948) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
bla (0.124347) |
