Non-Coding RNA Search

Ss1.1-Spl1-SPL01H050057.5

Sequence:


               
               TCGAGCTGGTTCGCAGACCTTGTCGCAGCCGAGCCCAGCTGATCAGGTGAGAGGCACGCA
GGCGCGGTCCACGGCCCATCGGCGGTGACTGGACCAGGGGGGCGAGGACGGCTCCCGTTC
TGGGTGAGGAGTGTTCGCAGACCTTGTCGCAGCCGAGCCCAGCTGATCAGTATGATCACG
GACGTGCAACTCGCCATCTTCGCCAACATGTTGGGCGTGTCGCTCTTCCTGCTTGTCGTT
CTCTATCACTACGTGGCCGTCAACAACCCCAAGAAGCAGGAATGAAAGTGGCGCTTTCTC
CGCCCCAGGGTTCCAGGACATAGTCTGAGGCAAGATGGAGGGTGAGGGGCCTTCACACTT
CACTTCATCCCTTCTAACCATCACAGCATACAAAGCAACTACACCTGGATTTTTCCAAAC
AACTTTTATTTCCTCAAAGTCTTCCTTAACCCTATGGAACAAGAAGCTGCCACTGAGTAG
GGCCCAGTATAGGGGCTGCTTTCTTTTCTACTCCCTCCCCCCAATATAAAAATATAGATT
TCAGCGGGACCCTGGGAGGCAAGGCTTGCTCAGGCCCTTCCAGCCTCCTGCCCCAGCAAC
ATACCTGTTTACCCCCAGCCTCTGAGGACAGATTCTGCCAGACTAGTTCCTTGAACCTCT
GCCTGAAGCTTCTGGCTGGGCTACCATATCTTTTCTGCAATCTTCTGGATAGCCTAATCT
CATGTTTTGTTTTACCCAATAAAGGATAGTCATTCATTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGCTGGTTCGCAGACCTTGTCGCAGCCGAGCCCAGCTGATCAGGTGAGAGGCACGCA
GGCGCGGTCCACGGCCCATCGGCGGTGACTGGACCAGGGGGGCGAGGACGGCTCCCGTTC
TGGGTGAGGAGTGTTCGCAGACCTTGTCGCAGCCGAGCCCAGCTGATCAGTATGATCACG
GACGTGCAACTCGCCATCTTCGCCAACATGTTGGGCGTGTCGCTCTTCCTGCTTGTCGTT
CTCTATCACTACGTGGCCGTCAACAACCCCAAGAAGCAGGAATGAAAGTGGCGCTTTCTC
CGCCCCAGGGTTCCAGGACATAGTCTGAGGCAAGATGGAGGGTGAGGGGCCTTCACACTT
CACTTCATCCCTTCTAACCATCACAGCATACAAAGCAACTACACCTGGATTTTTCCAAAC
AACTTTTATTTCCTCAAAGTCTTCCTTAACCCTATGGAACAAGAAGCTGCCACTGAGTAG
GGCCCAGTATAGGGGCTGCTTTCTTTTCTACTCCCTCCCCCCAATATAAAAATATAGATT
TCAGCGGGACCCTGGGAGGCAAGGCTTGCTCAGGCCCTTCCAGCCTCCTGCCCCAGCAAC
ATACCTGTTTACCCCCAGCCTCTGAGGACAGATTCTGCCAGACTAGTTCCTTGAACCTCT
GCCTGAAGCTTCTGGCTGGGCTACCATATCTTTTCTGCAATCTTCTGGATAGCCTAATCT
CATGTTTTGTTTTACCCAATAAAGGATAGTCATTCATTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21313564|ref|NP_077780.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21313564|ref|NP_077780.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-437, - strand, RNAz p=0.658784

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-437, - strand, RNAz p=0.658784

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               151-541, gnl|bosTau2|chr11 (53913218-53913610)
               

               
               151-541, gnl|Hg17|chr2 (27205980-27205010)
               

               
               151-541, gnl|Mm7|chr5 (29940050-29939049)
               


               
               612-760, gnl|bosTau2|chr11 (53024178-53024025)
               

               
               612-760, gnl|Mm7|chr5 (29932405-29932264)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-541, gnl|bosTau2|chr11 (53913218-53913610)
               

               
               151-541, gnl|Hg17|chr2 (27205980-27205010)
               

               
               151-541, gnl|Mm7|chr5 (29940050-29939049)
               


               
               612-760, gnl|bosTau2|chr11 (53024178-53024025)
               

               
               612-760, gnl|Mm7|chr5 (29932405-29932264)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

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               fty (0.879198)
               

               
               nlu (0.766724)
               

               
               ill (0.702371)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               med (0.58126)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               hyp (0.42851)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               spc (0.113366)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.879198)
               

               
               nlu (0.766724)
               

               
               ill (0.702371)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               med (0.58126)
               

               
               ton (0.526501)
               

               
               duo (0.518403)
               

               
               nje (0.49776)
               

               
               jej (0.494609)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               hyp (0.42851)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               spc (0.113366)

	151-541, gnl\|bosTau2\|chr11 (53913218-53913610)
	151-541, gnl\|Hg17\|chr2 (27205980-27205010)
	151-541, gnl\|Mm7\|chr5 (29940050-29939049)

	612-760, gnl\|bosTau2\|chr11 (53024178-53024025)
	612-760, gnl\|Mm7\|chr5 (29932405-29932264)

	fty (0.879198)
	nlu (0.766724)
	ill (0.702371)
	nca (0.684369)
	fhi (0.678311)
	cki (0.660939)
	mas (0.630915)
	med (0.58126)
	ton (0.526501)
	duo (0.518403)
	nje (0.49776)
	jej (0.494609)
	eje (0.494169)
	nco (0.485201)
	hyp (0.42851)
	nms (0.427716)
	che (0.408942)
	fli (0.405762)
	elu (0.385356)
	ese (0.379507)
	nep (0.36785)
	eep (0.367692)
	cly (0.361925)
	eru (0.360144)
	ebs (0.354904)
	fbs (0.350693)
	ecc (0.345105)
	mcp (0.341297)
	pty (0.285429)
	lnt (0.284616)
	pla (0.267344)
	cov (0.264306)
	cbl (0.229595)
	ece (0.229305)
	jca (0.22792)
	nbm (0.198649)
	ldo (0.194005)
	sag (0.182715)
	eye (0.170503)
	cje (0.165235)
	csp (0.161186)
	eli (0.151814)
	cag (0.151194)
	hlv (0.139256)
	nmm (0.132802)
	ute (0.132784)
	spc (0.113366)