Ss1.1-Spl1-SPL01H050077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCAAGGCGTCCCAGGTCCTAGCCCGGGCGCAACTCTGGGCGATTGGGAGGGACGCAGA CAGCTCAGCCAAGAGGGGCCCCCAAAAAACAACGCACCGAAACACCTCGGAGCGCAGCCC CAGCCTCTTCTCCAAAGTCACTCTCTCTTCCCTGCGGCACCGGCGCCCGGGCACCCCGGG ATCTGCCGAGCTGGGGGGTCGCTCCAGTTGCGAGGACCCGGGCTGCCCACCGGAGGAGGA ACGGGCGCCCAGGTGAGTTTCTCGGACCCAGGATCGGGCGACATCAGCTCGTCACCTTGG CCTGACGGTCTTCGGGCTGCGGAGGGAGCCCAGGGTGGAGAGCGGGGAAGGTTGGGCTGC AGCTGGAAGGGACCGTCGGGGAAGCGGATGACAGGTGGCCGGATGGGGGGACCGAACCCC CCGGGAGGATGCCCAGATAAATAGCAGAACTGCCTGGCTGAGAACCTGGGAAGGCTCGAG AGTGACTTTAAGCCTGAGCCGCCACTTCTCTGGGCGGTCCAGCTTCCCTTTCTGCAAAAG GAAAAAAAAAAAAAAAAAAAAAAAGGGCTACATCCCAGCCCGGGGAGGGGAAGACCCTTA CGGTTCCTGGTTAGAGGAGTGGTTCTTCAAGGGCATCAGCCGGAAGGATGCAGAGCGCCA ACTCCTGGCCCCAGGGAACGTGCTGGGCTCCTTCATGATCCGGGACAGTGAGACCACCAA AGGGAGCTACTCTTTGTCCGTGCGAGACTACGACCCCCAGCACAGGGACACGGTGAAGCA TTACAAGATCCGGACCCTGGACAGCGGGGGCTTCTACATCTCCCCACGGAGCACTTTCAA CACCCTGCAGGAGCTGGTGGCCCACTACAAGAAGGGGAGCGACGGGCTCTGCCAGAAGCT GACCGTGCCCTGTGTGTCCTCCAAGCCCCAGAAGCCTTGGGAGAAAGATGCCTGGGAGAT CCCCCGGGAGTCCCTCAAGATGGAGAAGAGACTTGGAGCGGGGCAGTTTGGGGAAGTCTG GCTGGCCACCTACAACAAGCACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCAAGGCGTCCCAGGTCCTAGCCCGGGCGCAACTCTGGGCGATTGGGAGGGACGCAGA CAGCTCAGCCAAGAGGGGCCCCCAAAAAACAACGCACCGAAACACCTCGGAGCGCAGCCC CAGCCTCTTCTCCAAAGTCACTCTCTCTTCCCTGCGGCACCGGCGCCCGGGCACCCCGGG ATCTGCCGAGCTGGGGGGTCGCTCCAGTTGCGAGGACCCGGGCTGCCCACCGGAGGAGGA ACGGGCGCCCAGGTGAGTTTCTCGGACCCAGGATCGGGCGACATCAGCTCGTCACCTTGG CCTGACGGTCTTCGGGCTGCGGAGGGAGCCCAGGGTGGAGAGCGGGGAAGGTTGGGCTGC AGCTGGAAGGGACCGTCGGGGAAGCGGATGACAGGTGGCCGGATGGGGGGACCGAACCCC CCGGGAGGATGCCCAGATAAATAGCAGAACTGCCTGGCTGAGAACCTGGGAAGGCTCGAG AGTGACTTTAAGCCTGAGCCGCCACTTCTCTGGGCGGTCCAGCTTCCCTTTCTGCAAAAG GAAAAAAAAAAAAAAAAAAAAAAAGGGCTACATCCCAGCCCGGGGAGGGGAAGACCCTTA CGGTTCCTGGTTAGAGGAGTGGTTCTTCAAGGGCATCAGCCGGAAGGATGCAGAGCGCCA ACTCCTGGCCCCAGGGAACGTGCTGGGCTCCTTCATGATCCGGGACAGTGAGACCACCAA AGGGAGCTACTCTTTGTCCGTGCGAGACTACGACCCCCAGCACAGGGACACGGTGAAGCA TTACAAGATCCGGACCCTGGACAGCGGGGGCTTCTACATCTCCCCACGGAGCACTTTCAA CACCCTGCAGGAGCTGGTGGCCCACTACAAGAAGGGGAGCGACGGGCTCTGCCAGAAGCT GACCGTGCCCTGTGTGTCCTCCAAGCCCCAGAAGCCTTGGGAGAAAGATGCCTGGGAGAT CCCCCGGGAGTCCCTCAAGATGGAGAAGAGACTTGGAGCGGGGCAGTTTGGGGAAGTCTG GCTGGCCACCTACAACAAGCACAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 718-893, gnl|bosTau2|chr4 (44030430-44030604) | |
| 718-893, gnl|Hg17|chr20 (30135353-30135531) | |
| 718-893, gnl|Mm7|chr2 (152874921-152875099) | |
| 727-868, gnl|bosTau2|chr13 (49333048-49332907) | |
| 727-868, gnl|Hg17|chr20 (35457983-35458124) | |
| 727-868, gnl|Mm7|chr2 (157205523-157205664) | |
| 921-1025, gnl|bosTau2|chr14 (11727399-11727295) | |
| 921-1025, gnl|canFam2|chr29 (10400662-10400860) | |
| 921-1025, gnl|danRer3|chr21 (27006085-27005926) | |
| 921-1025, gnl|dasNov1|scaffold_52978 (4083-3889) | |
| 921-1025, gnl|echTel1|scaffold_321073 (42685-42838) | |
| 921-1025, gnl|fr1|chrUn (272061339-272061161) | |
| 921-1025, gnl|galGal2|chr2 (110373090-110373282) | |
| 921-1025, gnl|hg17|chr8 (57028909-57029107) | |
| 921-1025, gnl|Hg17|chr8 (57028993-57029097) | |
| 921-1025, gnl|loxAfr1|scaffold_96941 (3147-2950) | |
| 921-1025, gnl|mm7|chr4 (3675773-3675970) | |
| 921-1025, gnl|Mm7|chr4 (3675856-3675960) | |
| 921-1025, gnl|monDom2|scaffold_4 (108115387-108115210) | |
| 921-1025, gnl|oryCun1|scaffold_199689 (156130-156317) | |
| 921-1025, gnl|panTro1|chr7 (58737008-58737206) | |
| 921-1025, gnl|rheMac2|chr8 (58560379-58560577) | |
| 921-1025, gnl|rn3|chr5 (17013638-17013833) | |
| 921-1025, gnl|tetNig1|chrUn_random (16184270-16184426) | |
| 921-1025, gnl|xenTro1|scaffold_8 (2692411-2692599) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 718-893, gnl|bosTau2|chr4 (44030430-44030604) | |
| 718-893, gnl|Hg17|chr20 (30135353-30135531) | |
| 718-893, gnl|Mm7|chr2 (152874921-152875099) | |
| 727-868, gnl|bosTau2|chr13 (49333048-49332907) | |
| 727-868, gnl|Hg17|chr20 (35457983-35458124) | |
| 727-868, gnl|Mm7|chr2 (157205523-157205664) | |
| 921-1025, gnl|bosTau2|chr14 (11727399-11727295) | |
| 921-1025, gnl|canFam2|chr29 (10400662-10400860) | |
| 921-1025, gnl|danRer3|chr21 (27006085-27005926) | |
| 921-1025, gnl|dasNov1|scaffold_52978 (4083-3889) | |
| 921-1025, gnl|echTel1|scaffold_321073 (42685-42838) | |
| 921-1025, gnl|fr1|chrUn (272061339-272061161) | |
| 921-1025, gnl|galGal2|chr2 (110373090-110373282) | |
| 921-1025, gnl|hg17|chr8 (57028909-57029107) | |
| 921-1025, gnl|Hg17|chr8 (57028993-57029097) | |
| 921-1025, gnl|loxAfr1|scaffold_96941 (3147-2950) | |
| 921-1025, gnl|mm7|chr4 (3675773-3675970) | |
| 921-1025, gnl|Mm7|chr4 (3675856-3675960) | |
| 921-1025, gnl|monDom2|scaffold_4 (108115387-108115210) | |
| 921-1025, gnl|oryCun1|scaffold_199689 (156130-156317) | |
| 921-1025, gnl|panTro1|chr7 (58737008-58737206) | |
| 921-1025, gnl|rheMac2|chr8 (58560379-58560577) | |
| 921-1025, gnl|rn3|chr5 (17013638-17013833) | |
| 921-1025, gnl|tetNig1|chrUn_random (16184270-16184426) | |
| 921-1025, gnl|xenTro1|scaffold_8 (2692411-2692599) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| med (0.116252) |