Non-Coding RNA Search

Ss1.1-Spl1-SPL01H070078.5

Sequence:


               
               AGGAAAGACATGGCGACTCTCTGGAGGCTCAGTGTTCTTTGCGGTGCCCGAGGAGGAGGA
GCTCTGGTCCTCCGGACCTCAGTGGTCAGACCTGCTCATGTCTCAGCATTTCTCCAGGAC
CGACCTACCCCGGGATGGTGTGGAGTACAGCACATTCACCTGTCACCCAGCCACCAGGCT
AGTTCCAAGGCTGCATCTCTCCACTGGACTGGTGAGAGGGTTGTCAGTGTTTTGCTCCTG
GGCCTACTTCCAGCCGCTTATTTGAATCCTTGTTCTGCGATGGACTACTCCCTGGCCGCA
GCCCTCACTCTCCATGGTCACTGGGGCATTGGACAAGTCGTTACTGACTACGTGCGAGGG
GATGCACTGCAGAAAGCTGCCAAGGCAGGCCTTTTGGCGCTCTCGGCTTTCACCTTTGCT
GGGCTTTGTTATTTCAACTATCATGATGTGGGTATCTGCAAAGCTGTTGCCATGTTGTGG
AAGCTCTGAGCTTTTAGAGCTAATACCTTGAGAGTTGATTGTACACCTCCTTGCCTCTGC
TCTGTCATGCCATTCAGCTCACAGTAAGAAGGAAATAATAGATAAGTCCATTGGTGAGAC
AAACCTCTTCTCCTAATCAGTGGGTTATTTTTGGAATTTAATCTTTGAGGAAAGATTTGA
GAGGAATCGTATCCAAGAAATTGTGAGACTGAGCTCTCACAAGACTCAGTGTCTCTCAGC
TTTTCACGAGACTCGGTGTAACTAAGCATTACATATGAGCTTTTGCCTTTTCATTTATCA
GACTTTTAAAGGGAATTCAGCTTTATTACTCTCAGTATCTGCTCACACTTCTGTATTTGT
CCTAGGATGATGGAGAAAGGGAAAGACCATTAATTCCTAAGGAAAGACTTTGTGGAAGAG
TAGGCAGTGTTTCGTTTTTACAGACTTCCCCTCTCTGTTCAGTTGATACCAGTTACTGAT
GGTTACATGTCCTGGGGAAATCAGAAAATTAGAAATGCTGATATTTCATATTACTCATTT
CTAAATCCCAGGAAGAGGAGCCTGGAGAGTTTCTGAATAAAGAGAAGTTCCATGTAGGGA
AGAGGTCCCATTATAGATGTTTCAAGTTGTTACAGATTCTAAACTGAGACTTAATCTTCA
CATGCGTTTATTTTACTTGTTGAAAATAATCTGTCCCCAAATATAAAATTATAAGTAATA
AGTTGTTGTTTTCCTGCTGTGGGATCTCTAATGTGAAAATGTATTCTACGAAGATAAAGT
TTTTTAAAAAAATAAAATGCTGTATAATTAAAATTTAAAAAAAAAAAATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAGACATGGCGACTCTCTGGAGGCTCAGTGTTCTTTGCGGTGCCCGAGGAGGAGGA
GCTCTGGTCCTCCGGACCTCAGTGGTCAGACCTGCTCATGTCTCAGCATTTCTCCAGGAC
CGACCTACCCCGGGATGGTGTGGAGTACAGCACATTCACCTGTCACCCAGCCACCAGGCT
AGTTCCAAGGCTGCATCTCTCCACTGGACTGGTGAGAGGGTTGTCAGTGTTTTGCTCCTG
GGCCTACTTCCAGCCGCTTATTTGAATCCTTGTTCTGCGATGGACTACTCCCTGGCCGCA
GCCCTCACTCTCCATGGTCACTGGGGCATTGGACAAGTCGTTACTGACTACGTGCGAGGG
GATGCACTGCAGAAAGCTGCCAAGGCAGGCCTTTTGGCGCTCTCGGCTTTCACCTTTGCT
GGGCTTTGTTATTTCAACTATCATGATGTGGGTATCTGCAAAGCTGTTGCCATGTTGTGG
AAGCTCTGAGCTTTTAGAGCTAATACCTTGAGAGTTGATTGTACACCTCCTTGCCTCTGC
TCTGTCATGCCATTCAGCTCACAGTAAGAAGGAAATAATAGATAAGTCCATTGGTGAGAC
AAACCTCTTCTCCTAATCAGTGGGTTATTTTTGGAATTTAATCTTTGAGGAAAGATTTGA
GAGGAATCGTATCCAAGAAATTGTGAGACTGAGCTCTCACAAGACTCAGTGTCTCTCAGC
TTTTCACGAGACTCGGTGTAACTAAGCATTACATATGAGCTTTTGCCTTTTCATTTATCA
GACTTTTAAAGGGAATTCAGCTTTATTACTCTCAGTATCTGCTCACACTTCTGTATTTGT
CCTAGGATGATGGAGAAAGGGAAAGACCATTAATTCCTAAGGAAAGACTTTGTGGAAGAG
TAGGCAGTGTTTCGTTTTTACAGACTTCCCCTCTCTGTTCAGTTGATACCAGTTACTGAT
GGTTACATGTCCTGGGGAAATCAGAAAATTAGAAATGCTGATATTTCATATTACTCATTT
CTAAATCCCAGGAAGAGGAGCCTGGAGAGTTTCTGAATAAAGAGAAGTTCCATGTAGGGA
AGAGGTCCCATTATAGATGTTTCAAGTTGTTACAGATTCTAAACTGAGACTTAATCTTCA
CATGCGTTTATTTTACTTGTTGAAAATAATCTGTCCCCAAATATAAAATTATAAGTAATA
AGTTGTTGTTTTCCTGCTGTGGGATCTCTAATGTGAAAATGTATTCTACGAAGATAAAGT
TTTTTAAAAAAATAAAATGCTGTATAATTAAAATTTAAAAAAAAAAAATAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53XW5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53XW5_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               323-1105, gnl|bosTau2|chr15 (9026882-9026103)
               

               
               323-1105, gnl|Hg17|chr11 (111470738-111471530)
               

               
               323-1105, gnl|Mm7|chr3 (86377726-86376944)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               323-1105, gnl|bosTau2|chr15 (9026882-9026103)
               

               
               323-1105, gnl|Hg17|chr11 (111470738-111471530)
               

               
               323-1105, gnl|Mm7|chr3 (86377726-86376944)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

Help | Less info


               
               tbr (2.92939)
               

               
               vin (1.99534)
               

               
               ldo (1.74605)
               

               
               sme (1.52718)
               

               
               ste (1.48729)
               

               
               ssp (1.21968)
               

               
               lin (1.16482)
               

               
               hea (1.02249)
               

               
               mgp (0.922722)
               

               
               ova (0.903926)
               

               
               isp (0.902256)
               

               
               bfe (0.899146)
               

               
               sin (0.874738)
               

               
               aor (0.781097)
               

               
               liv (0.731422)
               

               
               mgm (0.721371)
               

               
               che (0.68157)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               spl (0.572738)
               

               
               hlv (0.557025)
               

               
               sag (0.548145)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cki (0.495704)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               lun (0.451467)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               spc (0.340097)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               sug (0.127291)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (2.92939)
               

               
               vin (1.99534)
               

               
               ldo (1.74605)
               

               
               sme (1.52718)
               

               
               ste (1.48729)
               

               
               ssp (1.21968)
               

               
               lin (1.16482)
               

               
               hea (1.02249)
               

               
               mgp (0.922722)
               

               
               ova (0.903926)
               

               
               isp (0.902256)
               

               
               bfe (0.899146)
               

               
               sin (0.874738)
               

               
               aor (0.781097)
               

               
               liv (0.731422)
               

               
               mgm (0.721371)
               

               
               che (0.68157)
               

               
               lyg (0.665513)
               

               
               thg (0.633955)
               

               
               spl (0.572738)
               

               
               hlv (0.557025)
               

               
               sag (0.548145)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cki (0.495704)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               lun (0.451467)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               nms (0.427716)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               spc (0.340097)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               jej (0.296765)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               ret (0.257467)
               

               
               eep (0.245128)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               sug (0.127291)

	323-1105, gnl\|bosTau2\|chr15 (9026882-9026103)
	323-1105, gnl\|Hg17\|chr11 (111470738-111471530)
	323-1105, gnl\|Mm7\|chr3 (86377726-86376944)

	tbr (2.92939)
	vin (1.99534)
	ldo (1.74605)
	sme (1.52718)
	ste (1.48729)
	ssp (1.21968)
	lin (1.16482)
	hea (1.02249)
	mgp (0.922722)
	ova (0.903926)
	isp (0.902256)
	bfe (0.899146)
	sin (0.874738)
	aor (0.781097)
	liv (0.731422)
	mgm (0.721371)
	che (0.68157)
	lyg (0.665513)
	thg (0.633955)
	spl (0.572738)
	hlv (0.557025)
	sag (0.548145)
	rec (0.519211)
	kid (0.518941)
	cki (0.495704)
	tra (0.492368)
	mga (0.480615)
	fco (0.471624)
	lun (0.451467)
	fat (0.442282)
	ski (0.440205)
	nms (0.427716)
	cty (0.41632)
	bla (0.373042)
	gul (0.355177)
	fty (0.351679)
	spc (0.340097)
	nje (0.33184)
	csp (0.322373)
	jej (0.296765)
	lnt (0.284616)
	pla (0.267344)
	ret (0.257467)
	eep (0.245128)
	cbl (0.229595)
	mas (0.210305)
	eje (0.197668)
	col (0.195008)
	sto (0.179824)
	ill (0.175593)
	ton (0.1755)
	duo (0.172801)
	cli (0.152812)
	cst (0.140036)
	sug (0.127291)