Non-Coding RNA Search

Ss1.1-Spl1-SPL01H080077.5

Sequence:


               
               CCTCGTTCTCTAGCTCAGGACCAGGGCAGACGGGGCAGTCCCGCAGCCAGCGAGCCGGGC
GCGCCGCCGCCCACTTGCGCTGTGCCCGCCGCAGCCGAACCCGGCCCGGGCGGGAGCCGA
GCGGAGAGCGAGGATCGCGAGCCCAGGCCCGAGTGAGCGCGCTCGGCCGCCGCCGAGTCG
GCACCTGGAGGACATGGAGGAAAGGCCAGCAGAGACCAACGCCAATGTGGACGACTCGGC
GCTCCCCTCGGTGGCCCAGCTGGCTGGGCGGTTTAGGGAACAGGCAGCCGCTGCAAAGGA
GACACCAGCCAGTAGACCAACAAGAAGGAAACCACCCTGCTCCCTCTCTCTGTTCCCCCC
CAAGGTAGAGCTGGGCCAGAATGGTGAGGAGAAGTCACCACCCACTGCAAACCACCCTCC
TAAAATGAAGGTGAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAGCCTTTGA
TCCAGCTGCCCTGCTGCCTGGGGCATCACCCAAGAGTCCTGGTCTTAAGGCCATGGTGTC
ACCATTTCACAGCCCACCTTCTACCCCCAGCAGCCCTGGCGTGCGCTCTCGGGCCAGTGA
GCCTGAGGAACCACCCGTCAGCTTCGACCAGCCTCCTGAAGGCAGCCATCTGCCCTGTTA
CAACAAGGTGCGGACGAGGGGCTCCATTAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAG
GTCCCAGTCGGACTGTGGGGACCTGGGGGACTTCAGGGCAGTGGAGTCCTCCCAGGAGAA
TGGTGCCAAGGAAGAAAACGGGGATGAGGTGTTCCCAGCCAAGGGCAAGGCCCCAGGATC
CCCTCCTCAGAGCCGGATGTCCAGCAGGACAGAGAAGCCAGAGGAGAAGGGCAGGGCGGC
AGAGAAAGCCCAGCAGCCCGAGAAGGCCATGGGGAACTCCGAGGAGGGGGCAGGCCAGCG
TCCAGCCCAAGCCTCCAGCCCAGAAAGAGAGGATGCAAGTGGGAGTCCCACGGAGGAGAA
ACCAGCTGGAGGGCAGACGGAAGAGCCCTCAGAGGTGAAGGAGAAGGCGGCAAGTGGAGA
GGAGGAGCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTTCTCTAGCTCAGGACCAGGGCAGACGGGGCAGTCCCGCAGCCAGCGAGCCGGGC
GCGCCGCCGCCCACTTGCGCTGTGCCCGCCGCAGCCGAACCCGGCCCGGGCGGGAGCCGA
GCGGAGAGCGAGGATCGCGAGCCCAGGCCCGAGTGAGCGCGCTCGGCCGCCGCCGAGTCG
GCACCTGGAGGACATGGAGGAAAGGCCAGCAGAGACCAACGCCAATGTGGACGACTCGGC
GCTCCCCTCGGTGGCCCAGCTGGCTGGGCGGTTTAGGGAACAGGCAGCCGCTGCAAAGGA
GACACCAGCCAGTAGACCAACAAGAAGGAAACCACCCTGCTCCCTCTCTCTGTTCCCCCC
CAAGGTAGAGCTGGGCCAGAATGGTGAGGAGAAGTCACCACCCACTGCAAACCACCCTCC
TAAAATGAAGGTGAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAGCCTTTGA
TCCAGCTGCCCTGCTGCCTGGGGCATCACCCAAGAGTCCTGGTCTTAAGGCCATGGTGTC
ACCATTTCACAGCCCACCTTCTACCCCCAGCAGCCCTGGCGTGCGCTCTCGGGCCAGTGA
GCCTGAGGAACCACCCGTCAGCTTCGACCAGCCTCCTGAAGGCAGCCATCTGCCCTGTTA
CAACAAGGTGCGGACGAGGGGCTCCATTAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAG
GTCCCAGTCGGACTGTGGGGACCTGGGGGACTTCAGGGCAGTGGAGTCCTCCCAGGAGAA
TGGTGCCAAGGAAGAAAACGGGGATGAGGTGTTCCCAGCCAAGGGCAAGGCCCCAGGATC
CCCTCCTCAGAGCCGGATGTCCAGCAGGACAGAGAAGCCAGAGGAGAAGGGCAGGGCGGC
AGAGAAAGCCCAGCAGCCCGAGAAGGCCATGGGGAACTCCGAGGAGGGGGCAGGCCAGCG
TCCAGCCCAAGCCTCCAGCCCAGAAAGAGAGGATGCAAGTGGGAGTCCCACGGAGGAGAA
ACCAGCTGGAGGGCAGACGGAAGAGCCCTCAGAGGTGAAGGAGAAGGCGGCAAGTGGAGA
GGAGGAGCCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866920|ref|XP_589668.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866920|ref|XP_589668.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-203, gnl|bosTau2|chr3 (449668-449872)
               

               
               1-203, gnl|Hg17|chr1 (164331120-164331328)
               

               
               1-203, gnl|Mm7|chr1 (165678810-165678599)
               


               
               666-1090, gnl|bosTau2|chr3 (391526-391950)
               

               
               666-1090, gnl|Hg17|chr1 (164397992-164398506)
               

               
               666-1090, gnl|Mm7|chr1 (165626750-165626236)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr3 (449668-449872)
               

               
               1-203, gnl|Hg17|chr1 (164331120-164331328)
               

               
               1-203, gnl|Mm7|chr1 (165678810-165678599)
               


               
               666-1090, gnl|bosTau2|chr3 (391526-391950)
               

               
               666-1090, gnl|Hg17|chr1 (164397992-164398506)
               

               
               666-1090, gnl|Mm7|chr1 (165626750-165626236)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-203, gnl\|bosTau2\|chr3 (449668-449872)
	1-203, gnl\|Hg17\|chr1 (164331120-164331328)
	1-203, gnl\|Mm7\|chr1 (165678810-165678599)

	666-1090, gnl\|bosTau2\|chr3 (391526-391950)
	666-1090, gnl\|Hg17\|chr1 (164397992-164398506)
	666-1090, gnl\|Mm7\|chr1 (165626750-165626236)