Ss1.1-Spl1-SPL01H090033.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCCAAGGCTGATAAAATTAAGCTGGCACTGGAAAAACTGAAGGAGGCCAAGGTTAAG AAGCTCGTTGTCAAGGTACACATGAATGATAACAGCACAAAGTCGCTGATGGTGGATGAG CGGCAATTAGCCCGAGATGTCCTAGACAACCTTTTTGAGAAAACCCACTGCGACTGCAAC GTGGATTGGTGCCTTTATGAAATATACCCAGAACTACAGATCGAAAGGTTTTTTGAAGAC CATGAAAATGTTGTTGAAGTCTTATCAAACTGGACAAGAGACACAGAAAATAAAGTGCTG TTTTTGGAAAAAGAGGAAAAATATGCTGTATTTAAAAACCCCCAGAACTTTTACTTAGAC AACAAAGGGAAGAAAGAAAGCAAGGAGACAAATGAGAAAATGAATGCGAAGAACAAGGAA TCTTTACTGGAGGAGAGTTTCTGTGGAACATCCATCATTGTGCCAGAACTGGAAGGCGCT CTTTATTTGAAAGAAGACGGGAAGAAATCCTGGAAAAGGCGCTATTTTCTTTTACGAGCT TCCGGAATCTATTATGTCCCCAAAGGAAAAACAAAGACATCTCGGGATCTGGCATGTTTT ATACAGTTTGAAAACGTCAATATTTACTATGGGATTCAGTGTAAAATGAAATACAAAGCA CCCACTGACTACTGCTTTGTTTTAAAGCATCCCCAGATTCAGAAGGAGTCCCAGTATATC AGGTATCTCTGCTGTGATGACGCGAGGACGCTGAATCAGTGGGTCATGGGCATCAGGATC GCCAAGTATGGAAAGACGCTCTATGATAACTATCAGAAGGCCATGGCAAGGGCAGGGCTG GCCTCTCGGTGGACCAACCTGGGCACTGTCAACGCAGCCGCACCAGCCCCACCTTCCACA GGACTTCAAACAAGCACCACTCAGGCCAATGGTCAGATCCCCCAGGCGGCACCTTCTCTG ACTACTGTTCTTGGAGAAGCCCAGAGACATGTTGAAACTACCAAGGACAAGAAACCAGTC CTCGGCAGCCACGACCTGGGAGCGCCCAGGGCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCCAAGGCTGATAAAATTAAGCTGGCACTGGAAAAACTGAAGGAGGCCAAGGTTAAG AAGCTCGTTGTCAAGGTACACATGAATGATAACAGCACAAAGTCGCTGATGGTGGATGAG CGGCAATTAGCCCGAGATGTCCTAGACAACCTTTTTGAGAAAACCCACTGCGACTGCAAC GTGGATTGGTGCCTTTATGAAATATACCCAGAACTACAGATCGAAAGGTTTTTTGAAGAC CATGAAAATGTTGTTGAAGTCTTATCAAACTGGACAAGAGACACAGAAAATAAAGTGCTG TTTTTGGAAAAAGAGGAAAAATATGCTGTATTTAAAAACCCCCAGAACTTTTACTTAGAC AACAAAGGGAAGAAAGAAAGCAAGGAGACAAATGAGAAAATGAATGCGAAGAACAAGGAA TCTTTACTGGAGGAGAGTTTCTGTGGAACATCCATCATTGTGCCAGAACTGGAAGGCGCT CTTTATTTGAAAGAAGACGGGAAGAAATCCTGGAAAAGGCGCTATTTTCTTTTACGAGCT TCCGGAATCTATTATGTCCCCAAAGGAAAAACAAAGACATCTCGGGATCTGGCATGTTTT ATACAGTTTGAAAACGTCAATATTTACTATGGGATTCAGTGTAAAATGAAATACAAAGCA CCCACTGACTACTGCTTTGTTTTAAAGCATCCCCAGATTCAGAAGGAGTCCCAGTATATC AGGTATCTCTGCTGTGATGACGCGAGGACGCTGAATCAGTGGGTCATGGGCATCAGGATC GCCAAGTATGGAAAGACGCTCTATGATAACTATCAGAAGGCCATGGCAAGGGCAGGGCTG GCCTCTCGGTGGACCAACCTGGGCACTGTCAACGCAGCCGCACCAGCCCCACCTTCCACA GGACTTCAAACAAGCACCACTCAGGCCAATGGTCAGATCCCCCAGGCGGCACCTTCTCTG ACTACTGTTCTTGGAGAAGCCCAGAGACATGTTGAAACTACCAAGGACAAGAAACCAGTC CTCGGCAGCCACGACCTGGGAGCGCCCAGGGCCCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 62-223, gnl|bosTau2|chr13 (9137743-9137904) | |
| 62-223, gnl|canFam2|chr2 (10087404-10087224) | |
| 62-223, gnl|canFam2|chr37 (15314392-15314564) | |
| 62-223, gnl|danRer3|chr9 (16618010-16618181) | |
| 62-223, gnl|danRer3|chrUn (160024316-160024138) | |
| 62-223, gnl|dasNov1|scaffold_32892 (8347-8519) | |
| 62-223, gnl|dasNov1|scaffold_7040 (57149-57329) | |
| 62-223, gnl|echTel1|scaffold_285435 (4925-5104) | |
| 62-223, gnl|echTel1|scaffold_288937 (3148-3320) | |
| 62-223, gnl|fr1|chrUn (218477818-218477648) | |
| 62-223, gnl|fr1|chrUn (134060346-134060170) | |
| 62-223, gnl|galGal2|chr2 (15504192-15504022) | |
| 62-223, gnl|galGal2|chr7 (14378513-14378344) | |
| 62-223, gnl|hg17|chr10 (26840678-26840858) | |
| 62-223, gnl|Hg17|chr10 (26840680-26840841) | |
| 62-223, gnl|hg17|chr2 (204151473-204151645) | |
| 62-223, gnl|loxAfr1|scaffold_16184 (13584-13417) | |
| 62-223, gnl|loxAfr1|scaffold_16184 (13414-13594) | |
| 62-223, gnl|mm7|chr1 (60753753-60753925) | |
| 62-223, gnl|mm7|chr2 (22871201-22871381) | |
| 62-223, gnl|Mm7|chr2 (22871203-22871364) | |
| 62-223, gnl|monDom2|scaffold_39 (20728675-20728503) | |
| 62-223, gnl|monDom2|scaffold_7 (41826914-41826734) | |
| 62-223, gnl|oryCun1|scaffold_206025 (98622-98450) | |
| 62-223, gnl|oryCun1|scaffold_206303 (105111-105291) | |
| 62-223, gnl|panTro1|chr13 (94145289-94145461) | |
| 62-223, gnl|panTro1|chr8 (27172392-27172572) | |
| 62-223, gnl|rheMac2|chr12 (67328541-67328713) | |
| 62-223, gnl|rheMac2|chr9 (26686033-26686213) | |
| 62-223, gnl|rn3|chr17 (96505456-96505636) | |
| 62-223, gnl|rn3|chr9 (59252280-59252452) | |
| 62-223, gnl|tetNig1|chr3 (6256828-6256658) | |
| 62-223, gnl|tetNig1|chr6 (5685295-5685466) | |
| 62-223, gnl|xenTro1|scaffold_203 (534368-534539) | |
| 62-223, gnl|xenTro1|scaffold_42 (1014762-1014584) | |
| 417-576, gnl|bosTau2|chr13 (9148053-9148212) | |
| 417-576, gnl|Hg17|chr10 (26864993-26865152) | |
| 417-576, gnl|Mm7|chr2 (22890001-22890159) | |
| 785-902, gnl|bosTau2|chr13 (9155975-9156092) | |
| 785-902, gnl|canFam2|chr2 (10054520-10054434) | |
| 785-902, gnl|danRer3|chrUn (160009940-160009854) | |
| 785-902, gnl|dasNov1|scaffold_7040 (82609-82701) | |
| 785-902, gnl|echTel1|scaffold_285435 (37387-37472) | |
| 785-902, gnl|fr1|chrUn (134057559-134057473) | |
| 785-902, gnl|hg17|chr10 (26889651-26889737) | |
| 785-902, gnl|Hg17|chr10 (26889663-26889780) | |
| 785-902, gnl|loxAfr1|scaffold_16184 (55352-55439) | |
| 785-902, gnl|mm7|chr2 (22904570-22904656) | |
| 785-902, gnl|Mm7|chr2 (22904582-22904699) | |
| 785-902, gnl|monDom2|scaffold_7 (41776547-41776461) | |
| 785-902, gnl|oryCun1|scaffold_155776 (5723-5809) | |
| 785-902, gnl|panTro1|chr8 (27221120-27221207) | |
| 785-902, gnl|rheMac2|chr9 (26734443-26734529) | |
| 785-902, gnl|rn3|chr17 (96532804-96532890) | |
| 785-902, gnl|tetNig1|chr6 (5687622-5687705) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-223, gnl|bosTau2|chr13 (9137743-9137904) | |
| 62-223, gnl|canFam2|chr2 (10087404-10087224) | |
| 62-223, gnl|canFam2|chr37 (15314392-15314564) | |
| 62-223, gnl|danRer3|chr9 (16618010-16618181) | |
| 62-223, gnl|danRer3|chrUn (160024316-160024138) | |
| 62-223, gnl|dasNov1|scaffold_32892 (8347-8519) | |
| 62-223, gnl|dasNov1|scaffold_7040 (57149-57329) | |
| 62-223, gnl|echTel1|scaffold_285435 (4925-5104) | |
| 62-223, gnl|echTel1|scaffold_288937 (3148-3320) | |
| 62-223, gnl|fr1|chrUn (218477818-218477648) | |
| 62-223, gnl|fr1|chrUn (134060346-134060170) | |
| 62-223, gnl|galGal2|chr2 (15504192-15504022) | |
| 62-223, gnl|galGal2|chr7 (14378513-14378344) | |
| 62-223, gnl|hg17|chr10 (26840678-26840858) | |
| 62-223, gnl|Hg17|chr10 (26840680-26840841) | |
| 62-223, gnl|hg17|chr2 (204151473-204151645) | |
| 62-223, gnl|loxAfr1|scaffold_16184 (13584-13417) | |
| 62-223, gnl|loxAfr1|scaffold_16184 (13414-13594) | |
| 62-223, gnl|mm7|chr1 (60753753-60753925) | |
| 62-223, gnl|mm7|chr2 (22871201-22871381) | |
| 62-223, gnl|Mm7|chr2 (22871203-22871364) | |
| 62-223, gnl|monDom2|scaffold_39 (20728675-20728503) | |
| 62-223, gnl|monDom2|scaffold_7 (41826914-41826734) | |
| 62-223, gnl|oryCun1|scaffold_206025 (98622-98450) | |
| 62-223, gnl|oryCun1|scaffold_206303 (105111-105291) | |
| 62-223, gnl|panTro1|chr13 (94145289-94145461) | |
| 62-223, gnl|panTro1|chr8 (27172392-27172572) | |
| 62-223, gnl|rheMac2|chr12 (67328541-67328713) | |
| 62-223, gnl|rheMac2|chr9 (26686033-26686213) | |
| 62-223, gnl|rn3|chr17 (96505456-96505636) | |
| 62-223, gnl|rn3|chr9 (59252280-59252452) | |
| 62-223, gnl|tetNig1|chr3 (6256828-6256658) | |
| 62-223, gnl|tetNig1|chr6 (5685295-5685466) | |
| 62-223, gnl|xenTro1|scaffold_203 (534368-534539) | |
| 62-223, gnl|xenTro1|scaffold_42 (1014762-1014584) | |
| 417-576, gnl|bosTau2|chr13 (9148053-9148212) | |
| 417-576, gnl|Hg17|chr10 (26864993-26865152) | |
| 417-576, gnl|Mm7|chr2 (22890001-22890159) | |
| 785-902, gnl|bosTau2|chr13 (9155975-9156092) | |
| 785-902, gnl|canFam2|chr2 (10054520-10054434) | |
| 785-902, gnl|danRer3|chrUn (160009940-160009854) | |
| 785-902, gnl|dasNov1|scaffold_7040 (82609-82701) | |
| 785-902, gnl|echTel1|scaffold_285435 (37387-37472) | |
| 785-902, gnl|fr1|chrUn (134057559-134057473) | |
| 785-902, gnl|hg17|chr10 (26889651-26889737) | |
| 785-902, gnl|Hg17|chr10 (26889663-26889780) | |
| 785-902, gnl|loxAfr1|scaffold_16184 (55352-55439) | |
| 785-902, gnl|mm7|chr2 (22904570-22904656) | |
| 785-902, gnl|Mm7|chr2 (22904582-22904699) | |
| 785-902, gnl|monDom2|scaffold_7 (41776547-41776461) | |
| 785-902, gnl|oryCun1|scaffold_155776 (5723-5809) | |
| 785-902, gnl|panTro1|chr8 (27221120-27221207) | |
| 785-902, gnl|rheMac2|chr9 (26734443-26734529) | |
| 785-902, gnl|rn3|chr17 (96532804-96532890) | |
| 785-902, gnl|tetNig1|chr6 (5687622-5687705) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| csp (0.161186) | |
| thg (0.126791) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| thg (0.126791) | |
| med (0.116252) | |
| cty (0.10408) |