Ss1.1-Spl1-SPL01H100044.5
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ATTTTGCTGCGTCACCAGCCGCCGCCCGGCCTCACCACCCCTCGCTCGCACGCACGCACG
TTCATTCTCCGTTCTCGCGCCCCTTTTCCTACACTTTCCTTTTCTCCCCGACCGGAGGAG
TCGCTCTGCCCGCGCGGTGCATTCTGGGAACCCAGGTCTAGCCCGCCGTCGCCGCCGCCG
TCGCTTGAGGGAAAAGCGAAAAGAGGCCGCAATCGGGGAGAGGACGCCAGAGTCGCCACC
GGAGAGGAGTCGACTGCCTACCAGCTGCCGCCGGAGAGGCCCGCCCACCCGTTCGCCCGT
CCCCTTGCCCCGTTCACGATGCAGCCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTAT
GTCTTCATTGAATTTTGTGTTGAAGACAGTAAAGATGTTAATGTAAATTTTGAAAAGTCC
AAGCTTACATTCAGTTGTCTTGGAGGAAGTGATAATTTTAAACATTTAAATGAAATTGAT
CTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTA
TGTTGTTTACGAAAAGGAGAATCTGGCCAGTCATGGCCACGGTTAACAAAAGAAAGGGCG
AAGCTTAATTGGCTTAGTGTGGACTTCAATAATTGGAAAGACTGGGAAGATGACTCAGAT
GAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGATGAG
GATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAA
AAAATGCCAGATCTGGAGTAAGGAATGTGTCATCGCTGGATGTTGAGGAAGAAAAATAAC
TTCTCTTCAAAGGTTTCATAATTAAGAGAATTCCTGAGTTGATAGCTCTAAAGGCAGATT
CTGTATTTGCCTACTTTAACCCATTTTTCAACCTGTTTGTTTTTTTAAAAAGGCTTCACT
AAGGGTTGATATGTACCATTGTATGGGGCAATTTTAAGTCAGCTAAGGCAATAACCTTAT
GCATGAACATTTCCCAGACTGCCATGATGCTGTTGAGGCCTTAGGCAATTGATAAAGCAG
TTGTGATAAATAAAAACATTTCACCTAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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ATTTTGCTGCGTCACCAGCCGCCGCCCGGCCTCACCACCCCTCGCTCGCACGCACGCACG
TTCATTCTCCGTTCTCGCGCCCCTTTTCCTACACTTTCCTTTTCTCCCCGACCGGAGGAG
TCGCTCTGCCCGCGCGGTGCATTCTGGGAACCCAGGTCTAGCCCGCCGTCGCCGCCGCCG
TCGCTTGAGGGAAAAGCGAAAAGAGGCCGCAATCGGGGAGAGGACGCCAGAGTCGCCACC
GGAGAGGAGTCGACTGCCTACCAGCTGCCGCCGGAGAGGCCCGCCCACCCGTTCGCCCGT
CCCCTTGCCCCGTTCACGATGCAGCCTGCTTCTGCAAAGTGGTACGATCGAAGGGACTAT
GTCTTCATTGAATTTTGTGTTGAAGACAGTAAAGATGTTAATGTAAATTTTGAAAAGTCC
AAGCTTACATTCAGTTGTCTTGGAGGAAGTGATAATTTTAAACATTTAAATGAAATTGAT
CTTTTTCACTGTATTGATCCAAATGATTCCAAGCATAAAAGAACGGACAGATCAATTTTA
TGTTGTTTACGAAAAGGAGAATCTGGCCAGTCATGGCCACGGTTAACAAAAGAAAGGGCG
AAGCTTAATTGGCTTAGTGTGGACTTCAATAATTGGAAAGACTGGGAAGATGACTCAGAT
GAAGACATGTCTAATTTTGATCGTTTCTCTGAGATGATGAACAACATGGGTGGTGATGAG
GATGTAGATTTACCAGAAGTAGATGGAGCAGATGATGATTCACAAGACAGTGATGATGAA
AAAATGCCAGATCTGGAGTAAGGAATGTGTCATCGCTGGATGTTGAGGAAGAAAAATAAC
TTCTCTTCAAAGGTTTCATAATTAAGAGAATTCCTGAGTTGATAGCTCTAAAGGCAGATT
CTGTATTTGCCTACTTTAACCCATTTTTCAACCTGTTTGTTTTTTTAAAAAGGCTTCACT
AAGGGTTGATATGTACCATTGTATGGGGCAATTTTAAGTCAGCTAAGGCAATAACCTTAT
GCATGAACATTTCCCAGACTGCCATGATGCTGTTGAGGCCTTAGGCAATTGATAAAGCAG
TTGTGATAAATAAAAACATTTCACCTAAAAAAAAAA
|
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1-321, gnl|bosTau2|chr5 (33071715-33072028) |
|
1-321, gnl|canFam2|chr10 (3891954-3892155) |
|
1-321, gnl|dasNov1|scaffold_164550 (587-395) |
|
1-321, gnl|echTel1|scaffold_320897 (115841-116055) |
|
1-321, gnl|galGal2|chrUn (27051451-27051277) |
|
1-321, gnl|hg17|chr12 (55368049-55368262) |
|
1-321, gnl|Hg17|chr12 (55368365-55368048) |
|
1-321, gnl|loxAfr1|scaffold_14918 (78080-78288) |
|
1-321, gnl|mm7|chr10 (127560676-127560473) |
|
1-321, gnl|Mm7|chr10 (127560372-127560675) |
|
1-321, gnl|monDom2|scaffold_277 (64915-65154) |
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1-321, gnl|oryCun1|scaffold_70145 (1198-1421) |
|
1-321, gnl|panTro1|chr10 (56625957-56626170) |
|
1-321, gnl|rheMac2|chr11 (53768792-53769005) |
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1-321, gnl|rn3|chr7 (1351501-1351292) |
| |
|
609-1108, gnl|bosTau2|chr27 (2322176-2321683) |
|
609-1108, gnl|Hg17|chr4 (177769862-177769355) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-321, gnl|bosTau2|chr5 (33071715-33072028) |
|
1-321, gnl|canFam2|chr10 (3891954-3892155) |
|
1-321, gnl|dasNov1|scaffold_164550 (587-395) |
|
1-321, gnl|echTel1|scaffold_320897 (115841-116055) |
|
1-321, gnl|galGal2|chrUn (27051451-27051277) |
|
1-321, gnl|hg17|chr12 (55368049-55368262) |
|
1-321, gnl|Hg17|chr12 (55368365-55368048) |
|
1-321, gnl|loxAfr1|scaffold_14918 (78080-78288) |
|
1-321, gnl|mm7|chr10 (127560676-127560473) |
|
1-321, gnl|Mm7|chr10 (127560372-127560675) |
|
1-321, gnl|monDom2|scaffold_277 (64915-65154) |
|
1-321, gnl|oryCun1|scaffold_70145 (1198-1421) |
|
1-321, gnl|panTro1|chr10 (56625957-56626170) |
|
1-321, gnl|rheMac2|chr11 (53768792-53769005) |
|
1-321, gnl|rn3|chr7 (1351501-1351292) |
| |
|
609-1108, gnl|bosTau2|chr27 (2322176-2321683) |
|
609-1108, gnl|Hg17|chr4 (177769862-177769355) |
|
bfe (0.299715) |
|
fce (0.271592) |
|
nms (0.213858) |
|
cty (0.20816) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
csp (0.161186) |
|
mga (0.160205) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
ret (0.128733) |
|
sug (0.127291) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
bfe (0.299715) |
|
fce (0.271592) |
|
nms (0.213858) |
|
cty (0.20816) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
nco (0.161734) |
|
csp (0.161186) |
|
mga (0.160205) |
|
lun (0.150489) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
ret (0.128733) |
|
sug (0.127291) |
|
spc (0.113366) |
|
ldo (0.0970026) |
