Non-Coding RNA Search

Ss1.1-Spl1-SPL01H100074.5

Sequence:


               
               AGAACCCGGCTGGGACATCGGGCTGGCGGTTCGCTAGTGGGTGCATGGAGGCTGCCGGGG
GCGAGCGGGCGCCGCTGCTGGGCGCACGGCGTGCGGCGTTCGAGGGCCGGCGCGCGGCGT
GCGCTGCCGTGCTGCTGACGGAGCTGCTGGAGCGCGCCGCCTTCTACGGCATCACGGCCA
ACCTAGTGCTGTTCCTTAACGGCACGCCGTTCGACTGGGAGGGTGCGCAGGCCAGCCAGG
CGCTGCTGCTCTTCATGGGCCTCACCTATCTGGTGTCGCCATTCGGCGGCTGGCTGGCTG
ATGCGCGGCTCGGCCGGGCGCGCGCCATCCTGCTCAGCCTGGCACTCTACCTGCTTGGCA
TGCTGGCCTTCCCGTTGCTGGCCGCACCCTCGACCCGCACGGCGCTCTGCGGGGTCCCCG
GCCCTGCGCGCGTCCGCAACTGCTCTGCGCCGCCATGTCCCGACGCCCCCCCTCGCTACT
GCGCGCCCGCCGCTCTGTCAGCGCTGGCGCTCGTGGGCCTCGGCGTGGGCGCTGTCAAGG
CCAACATCACTCCCTTTGGCGCCGACCAGGTTAAAGACCGAGGTCCAGAAGCTGCGAGAA
GATTTTTTAACTGGTTTTATTGGAGCATTAACCTGGGAGCAATTGTCTCGCTGGGAGGCA
TCGCCTACATTCAGCAGAACGTCAGCTTTGTCACTGGCTACGTCATCCCTACTGTGTGTA
TCGGCGTCGCTTTCATGGTCTTCCTCTGCGGCCAGACCTTCTTCATCACTAAACCTCCCG
ATGGCAGTGCCTTCACCGACATGTTCAAGATCCTGCTGTATTCGTGCCGTCCCCAAAAAC
GAGTCAGAGAACACAGTCCTAGTGGTGAAGGCATTGGAGTCTTTCAGCAATCTTCTAAAA
ACAGTCTGTTTGATTCATGTAAGATGTCTCGAGGAGGGCCATTCCCAGAAGATAAAGTGG
AAGATGTGAAAGCTCTTGTCAAGATTGTCCCAGTTTTCTTGGCTTTGATACCTTACTGGA
CAGTGTATTTTCAAATGCAGACCACGTATGTTTTACAGAGTCTTCATTTGAAGATTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCCGGCTGGGACATCGGGCTGGCGGTTCGCTAGTGGGTGCATGGAGGCTGCCGGGG
GCGAGCGGGCGCCGCTGCTGGGCGCACGGCGTGCGGCGTTCGAGGGCCGGCGCGCGGCGT
GCGCTGCCGTGCTGCTGACGGAGCTGCTGGAGCGCGCCGCCTTCTACGGCATCACGGCCA
ACCTAGTGCTGTTCCTTAACGGCACGCCGTTCGACTGGGAGGGTGCGCAGGCCAGCCAGG
CGCTGCTGCTCTTCATGGGCCTCACCTATCTGGTGTCGCCATTCGGCGGCTGGCTGGCTG
ATGCGCGGCTCGGCCGGGCGCGCGCCATCCTGCTCAGCCTGGCACTCTACCTGCTTGGCA
TGCTGGCCTTCCCGTTGCTGGCCGCACCCTCGACCCGCACGGCGCTCTGCGGGGTCCCCG
GCCCTGCGCGCGTCCGCAACTGCTCTGCGCCGCCATGTCCCGACGCCCCCCCTCGCTACT
GCGCGCCCGCCGCTCTGTCAGCGCTGGCGCTCGTGGGCCTCGGCGTGGGCGCTGTCAAGG
CCAACATCACTCCCTTTGGCGCCGACCAGGTTAAAGACCGAGGTCCAGAAGCTGCGAGAA
GATTTTTTAACTGGTTTTATTGGAGCATTAACCTGGGAGCAATTGTCTCGCTGGGAGGCA
TCGCCTACATTCAGCAGAACGTCAGCTTTGTCACTGGCTACGTCATCCCTACTGTGTGTA
TCGGCGTCGCTTTCATGGTCTTCCTCTGCGGCCAGACCTTCTTCATCACTAAACCTCCCG
ATGGCAGTGCCTTCACCGACATGTTCAAGATCCTGCTGTATTCGTGCCGTCCCCAAAAAC
GAGTCAGAGAACACAGTCCTAGTGGTGAAGGCATTGGAGTCTTTCAGCAATCTTCTAAAA
ACAGTCTGTTTGATTCATGTAAGATGTCTCGAGGAGGGCCATTCCCAGAAGATAAAGTGG
AAGATGTGAAAGCTCTTGTCAAGATTGTCCCAGTTTTCTTGGCTTTGATACCTTACTGGA
CAGTGTATTTTCAAATGCAGACCACGTATGTTTTACAGAGTCTTCATTTGAAGATTCCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21426791|ref|NP_653359.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21426791|ref|NP_653359.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-124, gnl|bosTau2|chr17 (25027466-25027589)
               

               
               1-124, gnl|Hg17|chr12 (127833403-127833257)
               


               
               568-865, gnl|bosTau2|chr17 (25035633-25035930)
               

               
               568-865, gnl|Hg17|chr12 (127824497-127824200)
               

               
               568-865, gnl|Mm7|chr5 (126840640-126840349)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr17 (25027466-25027589)
               

               
               1-124, gnl|Hg17|chr12 (127833403-127833257)
               


               
               568-865, gnl|bosTau2|chr17 (25035633-25035930)
               

               
               568-865, gnl|Hg17|chr12 (127824497-127824200)
               

               
               568-865, gnl|Mm7|chr5 (126840640-126840349)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-124, gnl\|bosTau2\|chr17 (25027466-25027589)
	1-124, gnl\|Hg17\|chr12 (127833403-127833257)

	568-865, gnl\|bosTau2\|chr17 (25035633-25035930)
	568-865, gnl\|Hg17\|chr12 (127824497-127824200)
	568-865, gnl\|Mm7\|chr5 (126840640-126840349)