Non-Coding RNA Search

Ss1.1-Spl1-SPL01H120061.5

Sequence:


               
               GAGCAGCATCCTCCTCTGAATCAGAGTCTTCCAGGAGTCTTCGTTTCCCAGATTCTTCCA
CTAAGGCCGCCGTCTCCCTCTCGTCCTCTTCCTGCTCCCGCTTCTGCCTCTCTTCCTCTG
ACAGGCGGTGCTGCCGCAGCATGGCCTCAAAGTCCACATGGGCCTGTCGCTGGTTCAGGT
CCTTGAGCTCCTGCAGGTTCTCCAGAACCTCCATCTCCAGCTTGGAGTCCTTGGTTCTGT
TCTCCAGTACCTTCATGGGGTTGTTCAGCTCCTCGTCCTCCCGCTCCTTCTGCACTCTCT
TCTCCTCCTCCTCCAGGAGCTTCTCAGCCTGGAAGTTCCGCGTGGCTCCGTGCTCCATGG
TGTAGTCTGTGTTTTCGGGGTCTGTCTTGAAGGTGATCTCTGCAAGGCAGCGTGTGCACT
TGATGTAGAAGCGGAAGATGGGTAGGCCCAGGTAGGCCTCGTTCTGCACCGTCTCTTTGC
GGGCGTTGAATTTTTTGCCCTTGTAGATATATTCTCCACACGTCTTACACCTCATGTTGA
AGGGGGCCATTAGCCGTACCACGTACTGCCGGTCTTTGGGCAGCTTGAGCTTGGGGATCT
TCGACGGGTCAAAGTCAGGTGGGTAGTATTTGTTTAAAACTTTTCGCTCCGACATCTTTG
CCTCCTAGTCTTCTCACAAGCACGAGAGTACTGGTTAGGCTCGGTGCTTATCGAACTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGCATCCTCCTCTGAATCAGAGTCTTCCAGGAGTCTTCGTTTCCCAGATTCTTCCA
CTAAGGCCGCCGTCTCCCTCTCGTCCTCTTCCTGCTCCCGCTTCTGCCTCTCTTCCTCTG
ACAGGCGGTGCTGCCGCAGCATGGCCTCAAAGTCCACATGGGCCTGTCGCTGGTTCAGGT
CCTTGAGCTCCTGCAGGTTCTCCAGAACCTCCATCTCCAGCTTGGAGTCCTTGGTTCTGT
TCTCCAGTACCTTCATGGGGTTGTTCAGCTCCTCGTCCTCCCGCTCCTTCTGCACTCTCT
TCTCCTCCTCCTCCAGGAGCTTCTCAGCCTGGAAGTTCCGCGTGGCTCCGTGCTCCATGG
TGTAGTCTGTGTTTTCGGGGTCTGTCTTGAAGGTGATCTCTGCAAGGCAGCGTGTGCACT
TGATGTAGAAGCGGAAGATGGGTAGGCCCAGGTAGGCCTCGTTCTGCACCGTCTCTTTGC
GGGCGTTGAATTTTTTGCCCTTGTAGATATATTCTCCACACGTCTTACACCTCATGTTGA
AGGGGGCCATTAGCCGTACCACGTACTGCCGGTCTTTGGGCAGCTTGAGCTTGGGGATCT
TCGACGGGTCAAAGTCAGGTGGGTAGTATTTGTTTAAAACTTTTCGCTCCGACATCTTTG
CCTCCTAGTCTTCTCACAAGCACGAGAGTACTGGTTAGGCTCGGTGCTTATCGAACTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50785832|ref|XP_423475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50785832|ref|XP_423475.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               68-252, gnl|bosTau2|chr7 (15972944-15972760)
               

               
               68-252, gnl|Hg17|chr19 (4209421-4209237)
               

               
               68-252, gnl|Mm7|chr17 (54124220-54124036)
               


               
               386-543, gnl|bosTau2|chr7 (15969855-15969699)
               

               
               386-543, gnl|Hg17|chr19 (4202168-4202012)
               

               
               386-543, gnl|Mm7|chr17 (54121715-54121560)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-252, gnl|bosTau2|chr7 (15972944-15972760)
               

               
               68-252, gnl|Hg17|chr19 (4209421-4209237)
               

               
               68-252, gnl|Mm7|chr17 (54124220-54124036)
               


               
               386-543, gnl|bosTau2|chr7 (15969855-15969699)
               

               
               386-543, gnl|Hg17|chr19 (4202168-4202012)
               

               
               386-543, gnl|Mm7|chr17 (54121715-54121560)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               ton (0.1755)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               nje (0.16592)

	68-252, gnl\|bosTau2\|chr7 (15972944-15972760)
	68-252, gnl\|Hg17\|chr19 (4209421-4209237)
	68-252, gnl\|Mm7\|chr17 (54124220-54124036)

	386-543, gnl\|bosTau2\|chr7 (15969855-15969699)
	386-543, gnl\|Hg17\|chr19 (4202168-4202012)
	386-543, gnl\|Mm7\|chr17 (54121715-54121560)