Ss1.1-Spl1-SPL01H120097.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACATGCGCACTATCCTCACACCGGAGATGGGTGGCTACCGTGTCTGGGGCCAGGTCTG GGGCGGCTGTCGGCAGGGTCTGGGGATCTGCGCAGTGCCCAAGGCCGCAGGCTTTGGCAC CGAGGCCAGGCATCAGCTGCAATCCCGAGGTTCTAGCAAACGGTTGGGCTCCCTGGGTGA CAAACCTTTCCGGAGGCTGCTGCAGCCAGAGAATCTCAGTCGGGAAGAGCTGGTTGATGT ACTGAGGGAGGCTGTGGTGGACCAGAAAGGACCTCTGGTGACGTTGAACAAGCCACAGGG TCTGCCAGTGACAGGAAAACCAGGGGAGCTGACGTTGGTCTCAGTGCTTCCAGAGTTGAG CCAGTGCCTGGGGCTCGGGGAACGGGAGCTCCAGGTTGTCCGAGCATCTGGGAAGGAGAC CTCTGGGCTTGTACTCCTCTCCAGTTGTCCCCAGACAGCAAGCCGTCTCCAGAAGTTCTT CACCCATTCACAGAGAGCCAGGAAACCCACAGCCACCTACTGTGCTGTCACTGATGGGAT CCCAGCTGCTTCTGAGGGGAAGATCCAGGCAGCTCTGAAAATGGAACACACTGATGGGGC CAGTCTTGTAGTTCCCGTGAAGTCTCCATCCAGAAAGGACTTCTTGAAAGGTGTCAAGTG GACCCTCAGCCACTTCCGTGTGCTGGCCTCAGGCTCTGGCTGTGCCCTGGTCCAGCTACA GCCACTGACAGCGTTCCCCAGCCAGCTACAGGTGCACATGGTCCTACAGCTCTGCCCTGT GCTCGGGGACCACAAGTACTCTGCCTGTGTGGGCACAGTCCTGGGCCAGCGCTTTTTGCT GCCAGCTGAGAACACGAAGCCCCAAAGACAGGTCCTGGATGAAGCCCTTCTCAGCCGCCT CCACCTGACCCCTGCCCAGGCCGCCCAGCTGCCCCTGCATATCCACCTGCATCGTCTCCA CCTCCCGGGCACCAGACCCAGGGACGCACCCATCGAGCTTCTGGCACCTCTGCCCTCTTA TTTCTCCAGGACCTTACAGTGCCTGGGGCTCCAGTACCAATAGTCCTTCTGTTCCTGCTG TTCCCACTGGAAGGCAGTGGGACAGAGGGAGGATGGGCTGTGGTCAGGCCCATGCTAGGG AGGTCAGTGTCAACACGCAGTAGGGCCATGGTGTTAGATCCTGGGCCTGTGGTTGGACAG ACCAAAGATGACATTTTGGCCAGGCCACCTGCTATGAGTGTTGGGCACATGACTTCCCCT CTGTGGACTTGAGATAATAAAGGTACCTATATCAGAATGGTTGTGAGGATTTGCTGAGAA AGAAAATGTTTATGTGCTTTCTGCTGAGTTCAGCATGTGGCCTTTGTATTTGTTTCTGGT CCAATTCTAGCTGAGAGATGTTGTATTTTTTTTTAAATTGTGGTAAAATAGACCTAATAA AATTTACCATCCTAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACATGCGCACTATCCTCACACCGGAGATGGGTGGCTACCGTGTCTGGGGCCAGGTCTG GGGCGGCTGTCGGCAGGGTCTGGGGATCTGCGCAGTGCCCAAGGCCGCAGGCTTTGGCAC CGAGGCCAGGCATCAGCTGCAATCCCGAGGTTCTAGCAAACGGTTGGGCTCCCTGGGTGA CAAACCTTTCCGGAGGCTGCTGCAGCCAGAGAATCTCAGTCGGGAAGAGCTGGTTGATGT ACTGAGGGAGGCTGTGGTGGACCAGAAAGGACCTCTGGTGACGTTGAACAAGCCACAGGG TCTGCCAGTGACAGGAAAACCAGGGGAGCTGACGTTGGTCTCAGTGCTTCCAGAGTTGAG CCAGTGCCTGGGGCTCGGGGAACGGGAGCTCCAGGTTGTCCGAGCATCTGGGAAGGAGAC CTCTGGGCTTGTACTCCTCTCCAGTTGTCCCCAGACAGCAAGCCGTCTCCAGAAGTTCTT CACCCATTCACAGAGAGCCAGGAAACCCACAGCCACCTACTGTGCTGTCACTGATGGGAT CCCAGCTGCTTCTGAGGGGAAGATCCAGGCAGCTCTGAAAATGGAACACACTGATGGGGC CAGTCTTGTAGTTCCCGTGAAGTCTCCATCCAGAAAGGACTTCTTGAAAGGTGTCAAGTG GACCCTCAGCCACTTCCGTGTGCTGGCCTCAGGCTCTGGCTGTGCCCTGGTCCAGCTACA GCCACTGACAGCGTTCCCCAGCCAGCTACAGGTGCACATGGTCCTACAGCTCTGCCCTGT GCTCGGGGACCACAAGTACTCTGCCTGTGTGGGCACAGTCCTGGGCCAGCGCTTTTTGCT GCCAGCTGAGAACACGAAGCCCCAAAGACAGGTCCTGGATGAAGCCCTTCTCAGCCGCCT CCACCTGACCCCTGCCCAGGCCGCCCAGCTGCCCCTGCATATCCACCTGCATCGTCTCCA CCTCCCGGGCACCAGACCCAGGGACGCACCCATCGAGCTTCTGGCACCTCTGCCCTCTTA TTTCTCCAGGACCTTACAGTGCCTGGGGCTCCAGTACCAATAGTCCTTCTGTTCCTGCTG TTCCCACTGGAAGGCAGTGGGACAGAGGGAGGATGGGCTGTGGTCAGGCCCATGCTAGGG AGGTCAGTGTCAACACGCAGTAGGGCCATGGTGTTAGATCCTGGGCCTGTGGTTGGACAG ACCAAAGATGACATTTTGGCCAGGCCACCTGCTATGAGTGTTGGGCACATGACTTCCCCT CTGTGGACTTGAGATAATAAAGGTACCTATATCAGAATGGTTGTGAGGATTTGCTGAGAA AGAAAATGTTTATGTGCTTTCTGCTGAGTTCAGCATGTGGCCTTTGTATTTGTTTCTGGT CCAATTCTAGCTGAGAGATGTTGTATTTTTTTTTAAATTGTGGTAAAATAGACCTAATAA AATTTACCATCCTAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 415-522, + strand, RNAz p=0.878563 | |
| 608-701, - strand, RNAz p=0.631922 | |
| 909-1146, - strand, RNAz p=0.999972 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-522, + strand, RNAz p=0.878563 | |
| 608-701, - strand, RNAz p=0.631922 | |
| 909-1146, - strand, RNAz p=0.999972 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 119-270, gnl|bosTau2|chr22 (11983587-11983436) | |
| 119-270, gnl|canFam2|chr20 (11409862-11409680) | |
| 119-270, gnl|dasNov1|scaffold_74262 (6569-6387) | |
| 119-270, gnl|echTel1|scaffold_325473 (44487-44657) | |
| 119-270, gnl|hg17|chr3 (9860134-9860313) | |
| 119-270, gnl|Hg17|chr3 (9860296-9860141) | |
| 119-270, gnl|loxAfr1|scaffold_12207 (70429-70611) | |
| 119-270, gnl|mm7|chr6 (113579723-113579899) | |
| 119-270, gnl|Mm7|chr6 (113579883-113579737) | |
| 119-270, gnl|monDom2|scaffold_5 (36625607-36625795) | |
| 119-270, gnl|oryCun1|scaffold_209265 (37941-37769) | |
| 119-270, gnl|panTro1|chr2 (10241255-10241434) | |
| 119-270, gnl|rheMac2|chr2 (51141789-51141610) | |
| 119-270, gnl|rn3|chr4 (149545560-149545742) | |
| 415-522, gnl|bosTau2|chr22 (11981542-11981435) | |
| 415-522, gnl|canFam2|chr20 (11411966-11411833) | |
| 415-522, gnl|echTel1|scaffold_325473 (40847-40977) | |
| 415-522, gnl|hg17|chr3 (9857382-9857515) | |
| 415-522, gnl|Hg17|chr3 (9857489-9857382) | |
| 415-522, gnl|loxAfr1|scaffold_12207 (67438-67571) | |
| 415-522, gnl|mm7|chr6 (113578232-113578363) | |
| 415-522, gnl|Mm7|chr6 (113578339-113578232) | |
| 415-522, gnl|monDom2|scaffold_5 (36623864-36623976) | |
| 415-522, gnl|oryCun1|scaffold_209265 (39993-39857) | |
| 415-522, gnl|panTro1|chr2 (10238497-10238630) | |
| 415-522, gnl|rheMac2|chr2 (51144556-51144423) | |
| 415-522, gnl|rn3|chr4 (149543988-149544121) | |
| 608-731, gnl|bosTau2|chr22 (11981045-11980922) | |
| 608-731, gnl|canFam2|chr20 (11412483-11412353) | |
| 608-731, gnl|echTel1|scaffold_325473 (40319-40452) | |
| 608-731, gnl|hg17|chr3 (9856859-9856992) | |
| 608-731, gnl|Hg17|chr3 (9856991-9856868) | |
| 608-731, gnl|loxAfr1|scaffold_12207 (66908-67041) | |
| 608-731, gnl|mm7|chr6 (113577709-113577841) | |
| 608-731, gnl|Mm7|chr6 (113577840-113577717) | |
| 608-731, gnl|monDom2|scaffold_5 (36623320-36623448) | |
| 608-731, gnl|panTro1|chr17 (27722894-27723018) | |
| 608-731, gnl|rheMac2|chr2 (51145082-51144950) | |
| 608-731, gnl|rn3|chr4 (149543542-149543674) | |
| 869-1451, gnl|bosTau2|chr22 (11976464-11975873) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-270, gnl|bosTau2|chr22 (11983587-11983436) | |
| 119-270, gnl|canFam2|chr20 (11409862-11409680) | |
| 119-270, gnl|dasNov1|scaffold_74262 (6569-6387) | |
| 119-270, gnl|echTel1|scaffold_325473 (44487-44657) | |
| 119-270, gnl|hg17|chr3 (9860134-9860313) | |
| 119-270, gnl|Hg17|chr3 (9860296-9860141) | |
| 119-270, gnl|loxAfr1|scaffold_12207 (70429-70611) | |
| 119-270, gnl|mm7|chr6 (113579723-113579899) | |
| 119-270, gnl|Mm7|chr6 (113579883-113579737) | |
| 119-270, gnl|monDom2|scaffold_5 (36625607-36625795) | |
| 119-270, gnl|oryCun1|scaffold_209265 (37941-37769) | |
| 119-270, gnl|panTro1|chr2 (10241255-10241434) | |
| 119-270, gnl|rheMac2|chr2 (51141789-51141610) | |
| 119-270, gnl|rn3|chr4 (149545560-149545742) | |
| 415-522, gnl|bosTau2|chr22 (11981542-11981435) | |
| 415-522, gnl|canFam2|chr20 (11411966-11411833) | |
| 415-522, gnl|echTel1|scaffold_325473 (40847-40977) | |
| 415-522, gnl|hg17|chr3 (9857382-9857515) | |
| 415-522, gnl|Hg17|chr3 (9857489-9857382) | |
| 415-522, gnl|loxAfr1|scaffold_12207 (67438-67571) | |
| 415-522, gnl|mm7|chr6 (113578232-113578363) | |
| 415-522, gnl|Mm7|chr6 (113578339-113578232) | |
| 415-522, gnl|monDom2|scaffold_5 (36623864-36623976) | |
| 415-522, gnl|oryCun1|scaffold_209265 (39993-39857) | |
| 415-522, gnl|panTro1|chr2 (10238497-10238630) | |
| 415-522, gnl|rheMac2|chr2 (51144556-51144423) | |
| 415-522, gnl|rn3|chr4 (149543988-149544121) | |
| 608-731, gnl|bosTau2|chr22 (11981045-11980922) | |
| 608-731, gnl|canFam2|chr20 (11412483-11412353) | |
| 608-731, gnl|echTel1|scaffold_325473 (40319-40452) | |
| 608-731, gnl|hg17|chr3 (9856859-9856992) | |
| 608-731, gnl|Hg17|chr3 (9856991-9856868) | |
| 608-731, gnl|loxAfr1|scaffold_12207 (66908-67041) | |
| 608-731, gnl|mm7|chr6 (113577709-113577841) | |
| 608-731, gnl|Mm7|chr6 (113577840-113577717) | |
| 608-731, gnl|monDom2|scaffold_5 (36623320-36623448) | |
| 608-731, gnl|panTro1|chr17 (27722894-27723018) | |
| 608-731, gnl|rheMac2|chr2 (51145082-51144950) | |
| 608-731, gnl|rn3|chr4 (149543542-149543674) | |
| 869-1451, gnl|bosTau2|chr22 (11976464-11975873) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| mas (0.210305) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| che (0.136314) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| che (0.136314) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |