Ss1.1-Tes1-TES01A010003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGTGGCGGAGAAGCCCGGCGGTGCGGCGGTGGCGGAGAAGCCCGGCGGCGGCGCGAG CACTCGGTCCCGCCCGCCCTTCGCCTCTAACTCCGGCTTCCCTGGGCTTGGCGCGCTCCG GCCCTGCCTGACCCCTCCCAACACTCGCAGCCACGCCGGGCTTTGGCTGCCTGTCTCCGC CGCCGCAATGATGATGATGGCGCTGAGCAAGACTTTCGGGCAGAAGCCCGTCAAGTTCCA GATCGGCTCTGACGGCGAATTCTACATGATCGGCTCTGAGGTGGGAAACTACCTCCGTAT GTTCCGAGGTTCTCTGTACAAGAGATACCCCTCGCTCTGGAGGCGACTAGCCACTGTGGA AGAGAGGAAGAAAATAGTTGCATCGTCACATGATCATGGATACACAACCCTGGCCACCAG CGTGACTCTGTTAAAAGCCTCCGAGGTGGAAGAGATCCTGGACGGCAACGATGAGAAGTA CAAGGCCGTGTCTATCAGCACCGAGCCCCCAACCTACCTCAGGGAACAGAAAGCCAAGAG GAACAGCCAGTGGGTGCCCACCCTGCCCAACAGCTCCCACCACCTGGATGCCGTGCCCTG CTCCACGACCATCAACAGGAACCGCATGGGCCGGGACAAGAAGAGGACATTCCCACTCTG CTTTGACGACCATGACCCAGCTGTGATCCATGAGAATGCATCCCAGCCCGAGGTGCTGGT CCCCATCCGGCTGGACATGGAGATCGACGGGCAGAAGCTACGGGATGCCTTCACTTGGAA CATGAATGAGAAGCTGATGACCCCTGAGATGTTTTCAGAAATTCTCTGTGATGACCTGGA TTTGAACCCGCTGACATTTGTACCAGCCATCGCCTCTGCCATCAGACAGCAAATTGAGTC CTACCCCACAGACAGCATCCTGGAGGACCAGTCAGACCAGCGGGTCATTATCAAGCTGAA CATCCATGTGGGAAACATCTCGCTGGTGGACCAGTTCGAGTGGGACATGTCAGAGAAGGA GAACTCGCCAGAGAAGTTTGCACTGAAGCTGTGCTCTGAGCTGGGGCTGGGCGGGGAGTT CGTCACCACCATTGCATACAGCATTCGGGGACAGCTGAGCTGGCACCAGAAGACCTATGC CTTCAGTGAGAACCCCCTGCCCACGGTGGAGATTGCCATCCGGAACACAGGCGATGCTGA CCAGTGGTGCCCGCTGCTGGAGACCCTGACAGATGCCGAGATGGAAAAGAAGATCCGCGA CCAGGACAGGAACACAAGGCGGATGAGGCGTCTGGCCAATACTGCTCCGGCCTGGTAACC ACCCGGTGGTGCATGGCTCCCACGGAGCATGTGAAGATTGGACCGCCCACCTCTCCTGTC TTCTGGGAGGAGGGCATGAGGAGAGGCAGCCCGGCTGCCTGAGGAGCATGGGGTAGGGGC CTCTCAGTCGCCCCCCACCCACCCCCGGGTACACATTCCGTTTGCTGAGCCCCAGTCCCC GCTGCCCGTCTCTGGTCAGGAAGAGGCCTTGTTTTGGGTTGTGTTTTGTTTTTGTATAGG AACCCCAGGCAGGGCAAGCAACACTTTTTAAATAAAAGGCAACAAGTCCTGTTCTGTTTC ATCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGTGGCGGAGAAGCCCGGCGGTGCGGCGGTGGCGGAGAAGCCCGGCGGCGGCGCGAG CACTCGGTCCCGCCCGCCCTTCGCCTCTAACTCCGGCTTCCCTGGGCTTGGCGCGCTCCG GCCCTGCCTGACCCCTCCCAACACTCGCAGCCACGCCGGGCTTTGGCTGCCTGTCTCCGC CGCCGCAATGATGATGATGGCGCTGAGCAAGACTTTCGGGCAGAAGCCCGTCAAGTTCCA GATCGGCTCTGACGGCGAATTCTACATGATCGGCTCTGAGGTGGGAAACTACCTCCGTAT GTTCCGAGGTTCTCTGTACAAGAGATACCCCTCGCTCTGGAGGCGACTAGCCACTGTGGA AGAGAGGAAGAAAATAGTTGCATCGTCACATGATCATGGATACACAACCCTGGCCACCAG CGTGACTCTGTTAAAAGCCTCCGAGGTGGAAGAGATCCTGGACGGCAACGATGAGAAGTA CAAGGCCGTGTCTATCAGCACCGAGCCCCCAACCTACCTCAGGGAACAGAAAGCCAAGAG GAACAGCCAGTGGGTGCCCACCCTGCCCAACAGCTCCCACCACCTGGATGCCGTGCCCTG CTCCACGACCATCAACAGGAACCGCATGGGCCGGGACAAGAAGAGGACATTCCCACTCTG CTTTGACGACCATGACCCAGCTGTGATCCATGAGAATGCATCCCAGCCCGAGGTGCTGGT CCCCATCCGGCTGGACATGGAGATCGACGGGCAGAAGCTACGGGATGCCTTCACTTGGAA CATGAATGAGAAGCTGATGACCCCTGAGATGTTTTCAGAAATTCTCTGTGATGACCTGGA TTTGAACCCGCTGACATTTGTACCAGCCATCGCCTCTGCCATCAGACAGCAAATTGAGTC CTACCCCACAGACAGCATCCTGGAGGACCAGTCAGACCAGCGGGTCATTATCAAGCTGAA CATCCATGTGGGAAACATCTCGCTGGTGGACCAGTTCGAGTGGGACATGTCAGAGAAGGA GAACTCGCCAGAGAAGTTTGCACTGAAGCTGTGCTCTGAGCTGGGGCTGGGCGGGGAGTT CGTCACCACCATTGCATACAGCATTCGGGGACAGCTGAGCTGGCACCAGAAGACCTATGC CTTCAGTGAGAACCCCCTGCCCACGGTGGAGATTGCCATCCGGAACACAGGCGATGCTGA CCAGTGGTGCCCGCTGCTGGAGACCCTGACAGATGCCGAGATGGAAAAGAAGATCCGCGA CCAGGACAGGAACACAAGGCGGATGAGGCGTCTGGCCAATACTGCTCCGGCCTGGTAACC ACCCGGTGGTGCATGGCTCCCACGGAGCATGTGAAGATTGGACCGCCCACCTCTCCTGTC TTCTGGGAGGAGGGCATGAGGAGAGGCAGCCCGGCTGCCTGAGGAGCATGGGGTAGGGGC CTCTCAGTCGCCCCCCACCCACCCCCGGGTACACATTCCGTTTGCTGAGCCCCAGTCCCC GCTGCCCGTCTCTGGTCAGGAAGAGGCCTTGTTTTGGGTTGTGTTTTGTTTTTGTATAGG AACCCCAGGCAGGGCAAGCAACACTTTTTAAATAAAAGGCAACAAGTCCTGTTCTGTTTC ATCAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 279-397, + strand, RNAz p=0.935584 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 279-397, + strand, RNAz p=0.935584 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 19-224, gnl|bosTau2|chr17 (41467951-41468156) | |
| 19-224, gnl|Hg17|chr22 (22453756-22453947) | |
| 19-224, gnl|Mm7|chr10 (75577221-75577010) | |
| 279-409, gnl|bosTau2|chr17 (41471484-41471613) | |
| 279-409, gnl|canFam2|chr26 (31789393-31789254) | |
| 279-409, gnl|danRer3|chr8 (23823508-23823390) | |
| 279-409, gnl|dasNov1|scaffold_13503 (7652-7513) | |
| 279-409, gnl|echTel1|scaffold_231948 (1735-1874) | |
| 279-409, gnl|fr1|chrUn (245224286-245224425) | |
| 279-409, gnl|galGal2|chr15 (7945830-7945978) | |
| 279-409, gnl|hg17|chr22 (22458495-22458634) | |
| 279-409, gnl|Hg17|chr22 (22458495-22458624) | |
| 279-409, gnl|loxAfr1|scaffold_42445 (11053-11192) | |
| 279-409, gnl|mm7|chr10 (75572566-75572427) | |
| 279-409, gnl|Mm7|chr10 (75572564-75572435) | |
| 279-409, gnl|monDom2|scaffold_259 (44704-44843) | |
| 279-409, gnl|oryCun1|scaffold_130249 (5318-5457) | |
| 279-409, gnl|panTro1|chr23 (22487757-22487896) | |
| 279-409, gnl|rn3|chr20 (13144694-13144833) | |
| 279-409, gnl|tetNig1|chrUn_random (110564652-110564770) | |
| 279-409, gnl|xenTro1|scaffold_169 (1224891-1224769) | |
| 520-660, gnl|bosTau2|chr17 (41476978-41477118) | |
| 520-660, gnl|canFam2|chr26 (31783418-31783263) | |
| 520-660, gnl|danRer3|chr8 (23821908-23821760) | |
| 520-660, gnl|dasNov1|scaffold_13503 (2376-2219) | |
| 520-660, gnl|fr1|chrUn (245224827-245224970) | |
| 520-660, gnl|galGal2|chr15 (7947840-7947997) | |
| 520-660, gnl|hg17|chr22 (22467679-22467836) | |
| 520-660, gnl|Hg17|chr22 (22467682-22467822) | |
| 520-660, gnl|loxAfr1|scaffold_113843 (1553-1708) | |
| 520-660, gnl|mm7|chr10 (75567315-75567158) | |
| 520-660, gnl|Mm7|chr10 (75567309-75567170) | |
| 520-660, gnl|monDom2|scaffold_259 (45479-45632) | |
| 520-660, gnl|rn3|chr20 (13149426-13149581) | |
| 520-660, gnl|tetNig1|chrUn_random (110566757-110566906) | |
| 520-660, gnl|xenTro1|scaffold_169 (1220021-1219869) | |
| 954-1146, gnl|bosTau2|chr17 (41481447-41481639) | |
| 954-1146, gnl|Hg17|chr22 (22491964-22492156) | |
| 954-1146, gnl|Mm7|chr10 (75560227-75560035) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-224, gnl|bosTau2|chr17 (41467951-41468156) | |
| 19-224, gnl|Hg17|chr22 (22453756-22453947) | |
| 19-224, gnl|Mm7|chr10 (75577221-75577010) | |
| 279-409, gnl|bosTau2|chr17 (41471484-41471613) | |
| 279-409, gnl|canFam2|chr26 (31789393-31789254) | |
| 279-409, gnl|danRer3|chr8 (23823508-23823390) | |
| 279-409, gnl|dasNov1|scaffold_13503 (7652-7513) | |
| 279-409, gnl|echTel1|scaffold_231948 (1735-1874) | |
| 279-409, gnl|fr1|chrUn (245224286-245224425) | |
| 279-409, gnl|galGal2|chr15 (7945830-7945978) | |
| 279-409, gnl|hg17|chr22 (22458495-22458634) | |
| 279-409, gnl|Hg17|chr22 (22458495-22458624) | |
| 279-409, gnl|loxAfr1|scaffold_42445 (11053-11192) | |
| 279-409, gnl|mm7|chr10 (75572566-75572427) | |
| 279-409, gnl|Mm7|chr10 (75572564-75572435) | |
| 279-409, gnl|monDom2|scaffold_259 (44704-44843) | |
| 279-409, gnl|oryCun1|scaffold_130249 (5318-5457) | |
| 279-409, gnl|panTro1|chr23 (22487757-22487896) | |
| 279-409, gnl|rn3|chr20 (13144694-13144833) | |
| 279-409, gnl|tetNig1|chrUn_random (110564652-110564770) | |
| 279-409, gnl|xenTro1|scaffold_169 (1224891-1224769) | |
| 520-660, gnl|bosTau2|chr17 (41476978-41477118) | |
| 520-660, gnl|canFam2|chr26 (31783418-31783263) | |
| 520-660, gnl|danRer3|chr8 (23821908-23821760) | |
| 520-660, gnl|dasNov1|scaffold_13503 (2376-2219) | |
| 520-660, gnl|fr1|chrUn (245224827-245224970) | |
| 520-660, gnl|galGal2|chr15 (7947840-7947997) | |
| 520-660, gnl|hg17|chr22 (22467679-22467836) | |
| 520-660, gnl|Hg17|chr22 (22467682-22467822) | |
| 520-660, gnl|loxAfr1|scaffold_113843 (1553-1708) | |
| 520-660, gnl|mm7|chr10 (75567315-75567158) | |
| 520-660, gnl|Mm7|chr10 (75567309-75567170) | |
| 520-660, gnl|monDom2|scaffold_259 (45479-45632) | |
| 520-660, gnl|rn3|chr20 (13149426-13149581) | |
| 520-660, gnl|tetNig1|chrUn_random (110566757-110566906) | |
| 520-660, gnl|xenTro1|scaffold_169 (1220021-1219869) | |
| 954-1146, gnl|bosTau2|chr17 (41481447-41481639) | |
| 954-1146, gnl|Hg17|chr22 (22491964-22492156) | |
| 954-1146, gnl|Mm7|chr10 (75560227-75560035) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fty (0.351679) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| cov (0.132153) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fty (0.351679) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| fce (0.271592) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| col (0.195008) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| cov (0.132153) | |
| jca (0.11396) | |
| eje (0.0988338) |