Non-Coding RNA Search

Ss1.1-Tes1-TES01A010012.5

Sequence:


               
               CAGGCTCCTCCGGACTCGGCACGTCCTCCTGGGATTGTCTCCGGAGGGGACCGCGCTGTG
CAGACGCCATGGAGGTGTTGCTGATGTTCCTGTGCAGCCTGCTGGCCCCTGCGGTCCTGG
CCAGTGCAGCTGAGCAGGAGAAAGAAAAGGACCCTTTTCATTATGATTACCAGACCCTGC
GGATCGGGGGATTGGTGTTTGCTGTGGTCCTCTTCTCCGTGGGGATCCTGCTTATCCTGA
GTCGCAGATGCAAGTGCACTTTCAATCAGAAGCCACGGGCCCTGGGCGACGAGGAGGCCC
AGGTGGAGAACCTTGTCACTGCAAATGCAACGGAGCCCCAGAAAGCAGAGAACTGAAGCG
CAGCCCTCAGGCGAAAAGAAGCTGAAGGCAGCTGCTCCAACCTTTAGATGCACATGCTGA
TGCTTAAGAAAACCGACCACTTCAGCAACCAATCTTTCCCCAGGAGAAGCCAAGAACTTG
TGTGTCCCCCGGCTCTTTCTCCAGCTCCTCAAGCACCTGTTCCCAACTTAATGATGCAAC
CCTGCCTCCCCCACCTGCAGCCTGTGGTCTTGTCCATCTCCTGTGACATGTGTGTGTCTG
TGTGTCCGATGACTGTGATCTTCGTGGCTGCTTATTTGTGAATGATGTTGTGTTTAGTGC
ACCTGGCCTCTCTTTCCTGTGCAGGAGCTGGGCCGTGTGGCCGTCAGCACCTCCCTGCTC
TCTGTGGCCCCATCACCTCCCATTCCTCGGAGTCTGCTTTTCCCCTGAGAGACCTGTCCC
CTCTCTGGATGGAGGGGTGGGTGTAAGAGTCGGGCACGGGTGGGAGTCTCCAGGAGCCTT
GGGCCTTGGGAAGGTTTGCATCACCTTCAGGGTCCTTCTGCATGGCCCCTCTTCACTCTT
ATAAGACTCTTGCTTCCGTATTCCTCCCTGGACCAAGTCTGCTCTGAGGTCTCCTGGCAG
TGGGAGGTTCCCAGCAAGGAGCTGGTGAGACCGCTTTGCCCTCAGGCAGCCCCTTTCCCT
GATCTCCATCTGCCCTATCCTTCCCGTCTCCCGCCCTGGGGACATGCCCCTTGCATATCT
TATCAGCAATAACCCCATGGCTCTGGAACCCTCCCCTCTCTCCAGCCTTCTCTGCTCCCA
AGACTCCCGTCTGCAGCTCATCTGCAGCCCAGCTCCCCTGGACTCAGACTCCCGTCCCTG
ACTCGGGTCTCTGGCAGGCGAGAGTGGAAGGGATGCATTCCGCTGGGGCCAGTGCTCTGG
GGAGGGACAGCAGGGAGAGGATCCTTTGCCTCTCTGTCCATGCCCTGTTGGCTGGGCAGC
AGTGTGGCTCCTGTGCCCTTGGCTCTGCCCATCACTGGCCAGACAGCAGATGCAGCGGCT
ATGCTGCAGGTTAGAGCCCAGGCAGGGCTCCTCGCAGCCCTGCTGCAGAGGGATCAACAT
GAAGAAAGTGGAAAATCGGACTCCCTCCCCAACCCATCGTGTGCTTGTGGAAAGTGACCA
AACTGTGCTGCTGTGACCAGGACTGCTGTTCTCCGCGTCGTGATCTCTCAACAACAAGAG
GAATAAAATACCATTTGTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTCCTCCGGACTCGGCACGTCCTCCTGGGATTGTCTCCGGAGGGGACCGCGCTGTG
CAGACGCCATGGAGGTGTTGCTGATGTTCCTGTGCAGCCTGCTGGCCCCTGCGGTCCTGG
CCAGTGCAGCTGAGCAGGAGAAAGAAAAGGACCCTTTTCATTATGATTACCAGACCCTGC
GGATCGGGGGATTGGTGTTTGCTGTGGTCCTCTTCTCCGTGGGGATCCTGCTTATCCTGA
GTCGCAGATGCAAGTGCACTTTCAATCAGAAGCCACGGGCCCTGGGCGACGAGGAGGCCC
AGGTGGAGAACCTTGTCACTGCAAATGCAACGGAGCCCCAGAAAGCAGAGAACTGAAGCG
CAGCCCTCAGGCGAAAAGAAGCTGAAGGCAGCTGCTCCAACCTTTAGATGCACATGCTGA
TGCTTAAGAAAACCGACCACTTCAGCAACCAATCTTTCCCCAGGAGAAGCCAAGAACTTG
TGTGTCCCCCGGCTCTTTCTCCAGCTCCTCAAGCACCTGTTCCCAACTTAATGATGCAAC
CCTGCCTCCCCCACCTGCAGCCTGTGGTCTTGTCCATCTCCTGTGACATGTGTGTGTCTG
TGTGTCCGATGACTGTGATCTTCGTGGCTGCTTATTTGTGAATGATGTTGTGTTTAGTGC
ACCTGGCCTCTCTTTCCTGTGCAGGAGCTGGGCCGTGTGGCCGTCAGCACCTCCCTGCTC
TCTGTGGCCCCATCACCTCCCATTCCTCGGAGTCTGCTTTTCCCCTGAGAGACCTGTCCC
CTCTCTGGATGGAGGGGTGGGTGTAAGAGTCGGGCACGGGTGGGAGTCTCCAGGAGCCTT
GGGCCTTGGGAAGGTTTGCATCACCTTCAGGGTCCTTCTGCATGGCCCCTCTTCACTCTT
ATAAGACTCTTGCTTCCGTATTCCTCCCTGGACCAAGTCTGCTCTGAGGTCTCCTGGCAG
TGGGAGGTTCCCAGCAAGGAGCTGGTGAGACCGCTTTGCCCTCAGGCAGCCCCTTTCCCT
GATCTCCATCTGCCCTATCCTTCCCGTCTCCCGCCCTGGGGACATGCCCCTTGCATATCT
TATCAGCAATAACCCCATGGCTCTGGAACCCTCCCCTCTCTCCAGCCTTCTCTGCTCCCA
AGACTCCCGTCTGCAGCTCATCTGCAGCCCAGCTCCCCTGGACTCAGACTCCCGTCCCTG
ACTCGGGTCTCTGGCAGGCGAGAGTGGAAGGGATGCATTCCGCTGGGGCCAGTGCTCTGG
GGAGGGACAGCAGGGAGAGGATCCTTTGCCTCTCTGTCCATGCCCTGTTGGCTGGGCAGC
AGTGTGGCTCCTGTGCCCTTGGCTCTGCCCATCACTGGCCAGACAGCAGATGCAGCGGCT
ATGCTGCAGGTTAGAGCCCAGGCAGGGCTCCTCGCAGCCCTGCTGCAGAGGGATCAACAT
GAAGAAAGTGGAAAATCGGACTCCCTCCCCAACCCATCGTGTGCTTGTGGAAAGTGACCA
AACTGTGCTGCTGTGACCAGGACTGCTGTTCTCCGCGTCGTGATCTCTCAACAACAAGAG
GAATAAAATACCATTTGTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61839553|ref|XP_588321.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61839553|ref|XP_588321.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               632-745, - strand, RNAz p=0.556742
               

               
               1108-1331, - strand, RNAz p=0.970843

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               632-745, - strand, RNAz p=0.556742
               

               
               1108-1331, - strand, RNAz p=0.970843

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               377-1584, gnl|bosTau2|chr15 (14094628-14093433)
               

               
               377-1584, gnl|Hg17|chr11 (117214197-117212906)
               

               
               377-1584, gnl|Mm7|chr9 (45353209-45354376)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-1584, gnl|bosTau2|chr15 (14094628-14093433)
               

               
               377-1584, gnl|Hg17|chr11 (117214197-117212906)
               

               
               377-1584, gnl|Mm7|chr9 (45353209-45354376)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               elu (1.15607)
               

               
               fcc (0.988924)
               

               
               cga (0.837287)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               hyp (0.42851)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.15607)
               

               
               fcc (0.988924)
               

               
               cga (0.837287)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               hyp (0.42851)
               

               
               nlu (0.383362)
               

               
               ese (0.379507)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	632-745, - strand, RNAz p=0.556742
	1108-1331, - strand, RNAz p=0.970843

	377-1584, gnl\|bosTau2\|chr15 (14094628-14093433)
	377-1584, gnl\|Hg17\|chr11 (117214197-117212906)
	377-1584, gnl\|Mm7\|chr9 (45353209-45354376)

	elu (1.15607)
	fcc (0.988924)
	cga (0.837287)
	ecc (0.46014)
	ece (0.45861)
	jca (0.45584)
	hyp (0.42851)
	nlu (0.383362)
	ese (0.379507)
	eru (0.360144)
	ebs (0.354904)
	med (0.348756)
	fhi (0.339155)
	csp (0.322373)
	cty (0.31224)
	cov (0.264306)
	cly (0.241284)
	cmu (0.186393)
	nep (0.183925)
	fbs (0.175346)
	mcp (0.170648)
	lnt (0.142308)
	cst (0.140036)
	nmm (0.132802)
	ute (0.132784)
	cbr (0.127975)
	eep (0.122564)
	clu (0.119646)
	nbm (0.0993246)