Non-Coding RNA Search

Ss1.1-Tes1-TES01A010043.5.5

Sequence:


               
               GCGCCCCTTCTCTACTTTCCCTTCAGCCCTAGAGCGGCATCCTGGAGCCAGGCCCTCAGC
AGGTGGGGCCCGCGCCTTTGCACTCAGCCCGGAGGCTCGCGGCGAGAGTGCTGCTAGTGG
GCACCCAACCCATTCTGCGTCGCATCGGCTGCCAGCATTGCGCAGACCTTCGGCCTCGCG
TTTGGGAGAAACCAGACCCATCCGCTGTCCGTGCAGAGGCACCGCTGCCCCGCTCCCGAC
CATGTCGTCCAACATTCGCGTGGCGGTGGTGACCGGCGGCAACAAGGGCATCGGCCTCGC
CATCGTGCGTGATCTGTGCCAGCAGTTCTCGGGGGATGTGATGCTTACGGCGCGGGACGT
GGCGAGAGGCCAGGCGGCGGTGCAGCAGCTGCAGGCTGAGGGTCTGAGCCCGCGCTTCCA
CCAGCTGGATATCGACGACCTTCGGAGCATCCAGGCCCTGCGCGACTTCCTGCTCAAGGA
GTATGGGGGACTCAACGTGCTGGTCAATAACGCGGGCATCGCTTTCAAAACTGTTGATCC
CACACCGTTTCATATTCAAGCAGAAGTAACTATGAAAACAAACTTCTTGGGAACCCGAAA
TGTATGCACAGAGCTCCTGCCTCTGATAAAACCCCAAGGCAGAGTGGTGAATGTGTCTAG
CACTGAGAGTGTCAGAGCTCTTAACAACTGCAGTCCTGAACTGCAACAGAAGTTCAAGAG
TGAGACCATCACAGAGGAAGAGCTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAA
GAACGGAGTCCATAAGAAGGAAGGCTGGCCAAGTACCGCGTACGGAGTGACAAAAATCGG
GGTCACTGTACTCTCCAGGATCTATGCCAGGAAACTGAGTGAGCAGAGAGCAGGGGACAA
GATCCTCCTGAATGCCTGCTGCCCAGGGTGGGTGAGAACTGACATGGCTGGACCCAAAGC
CCCCAAGAGCCCAGAGGAAGGAGCAGAGACCCCCGTGTACCTGGCCCTTTTACCCTCAGA
TGCAGAGGGGCCTCACGGTCAGTTTGTTTCTGAGAAAAAAGTTGTAGAATGGGGTGTTCC
CCCTTAGAGCTACCCCTGGGTCAATGCATAATTTGTGTCCTGATTTCACCAAAAGGATAC
TTACACTATCAAAAATATTCCTGTGCAAAAAAAAAAAAAAAAAAAAAATTTGTAAAAGAA
TCCAAATCTCTCTCTATTAAGTCGCCACTGGGAGACGGCTGCTCATTCTGTGAAGGCTTT
TGTGATTTCTTCTATTATCCCAGGGAGGGAAAATGGAATGGATTCCAAATGATGACTAAA
AATCAAAGATGAATAAATAGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCCCTTCTCTACTTTCCCTTCAGCCCTAGAGCGGCATCCTGGAGCCAGGCCCTCAGC
AGGTGGGGCCCGCGCCTTTGCACTCAGCCCGGAGGCTCGCGGCGAGAGTGCTGCTAGTGG
GCACCCAACCCATTCTGCGTCGCATCGGCTGCCAGCATTGCGCAGACCTTCGGCCTCGCG
TTTGGGAGAAACCAGACCCATCCGCTGTCCGTGCAGAGGCACCGCTGCCCCGCTCCCGAC
CATGTCGTCCAACATTCGCGTGGCGGTGGTGACCGGCGGCAACAAGGGCATCGGCCTCGC
CATCGTGCGTGATCTGTGCCAGCAGTTCTCGGGGGATGTGATGCTTACGGCGCGGGACGT
GGCGAGAGGCCAGGCGGCGGTGCAGCAGCTGCAGGCTGAGGGTCTGAGCCCGCGCTTCCA
CCAGCTGGATATCGACGACCTTCGGAGCATCCAGGCCCTGCGCGACTTCCTGCTCAAGGA
GTATGGGGGACTCAACGTGCTGGTCAATAACGCGGGCATCGCTTTCAAAACTGTTGATCC
CACACCGTTTCATATTCAAGCAGAAGTAACTATGAAAACAAACTTCTTGGGAACCCGAAA
TGTATGCACAGAGCTCCTGCCTCTGATAAAACCCCAAGGCAGAGTGGTGAATGTGTCTAG
CACTGAGAGTGTCAGAGCTCTTAACAACTGCAGTCCTGAACTGCAACAGAAGTTCAAGAG
TGAGACCATCACAGAGGAAGAGCTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAA
GAACGGAGTCCATAAGAAGGAAGGCTGGCCAAGTACCGCGTACGGAGTGACAAAAATCGG
GGTCACTGTACTCTCCAGGATCTATGCCAGGAAACTGAGTGAGCAGAGAGCAGGGGACAA
GATCCTCCTGAATGCCTGCTGCCCAGGGTGGGTGAGAACTGACATGGCTGGACCCAAAGC
CCCCAAGAGCCCAGAGGAAGGAGCAGAGACCCCCGTGTACCTGGCCCTTTTACCCTCAGA
TGCAGAGGGGCCTCACGGTCAGTTTGTTTCTGAGAAAAAAGTTGTAGAATGGGGTGTTCC
CCCTTAGAGCTACCCCTGGGTCAATGCATAATTTGTGTCCTGATTTCACCAAAAGGATAC
TTACACTATCAAAAATATTCCTGTGCAAAAAAAAAAAAAAAAAAAAAATTTGTAAAAGAA
TCCAAATCTCTCTCTATTAAGTCGCCACTGGGAGACGGCTGCTCATTCTGTGAAGGCTTT
TGTGATTTCTTCTATTATCCCAGGGAGGGAAAATGGAATGGATTCCAAATGATGACTAAA
AATCAAAGATGAATAAATAGTTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47522960|ref|NP_999238.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522960|ref|NP_999238.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               676-795, - strand, RNAz p=0.949185
               

               
               956-1115, - strand, RNAz p=0.998868

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               676-795, - strand, RNAz p=0.949185
               

               
               956-1115, - strand, RNAz p=0.998868

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               227-528, gnl|bosTau2|chr1 (96144786-96145088)
               

               
               227-528, gnl|Hg17|chr21 (36364256-36364570)
               

               
               227-528, gnl|Mm7|chr16 (93667443-93667745)
               


               
               637-1323, gnl|bosTau2|chr1 (96160732-96161395)
               


               
               788-996, gnl|bosTau2|chr11 (21412908-21412700)
               

               
               788-996, gnl|Hg17|chr21 (36440393-36440652)
               

               
               788-996, gnl|Mm7|chr16 (93750656-93750915)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-528, gnl|bosTau2|chr1 (96144786-96145088)
               

               
               227-528, gnl|Hg17|chr21 (36364256-36364570)
               

               
               227-528, gnl|Mm7|chr16 (93667443-93667745)
               


               
               637-1323, gnl|bosTau2|chr1 (96160732-96161395)
               


               
               788-996, gnl|bosTau2|chr11 (21412908-21412700)
               

               
               788-996, gnl|Hg17|chr21 (36440393-36440652)
               

               
               788-996, gnl|Mm7|chr16 (93750656-93750915)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               pro (1.02407)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               nje (0.49776)
               

               
               cje (0.495704)
               

               
               cki (0.495704)
               

               
               hlv (0.417769)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               kid (0.259471)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               nje (0.49776)
               

               
               cje (0.495704)
               

               
               cki (0.495704)
               

               
               hlv (0.417769)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               kid (0.259471)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	676-795, - strand, RNAz p=0.949185
	956-1115, - strand, RNAz p=0.998868

	227-528, gnl\|bosTau2\|chr1 (96144786-96145088)
	227-528, gnl\|Hg17\|chr21 (36364256-36364570)
	227-528, gnl\|Mm7\|chr16 (93667443-93667745)

	637-1323, gnl\|bosTau2\|chr1 (96160732-96161395)

	788-996, gnl\|bosTau2\|chr11 (21412908-21412700)
	788-996, gnl\|Hg17\|chr21 (36440393-36440652)
	788-996, gnl\|Mm7\|chr16 (93750656-93750915)

	pro (1.02407)
	fce (0.543183)
	fhi (0.508733)
	nje (0.49776)
	cje (0.495704)
	cki (0.495704)
	hlv (0.417769)
	ute (0.398353)
	col (0.390016)
	nco (0.323468)
	hyp (0.285673)
	pty (0.285429)
	cov (0.264306)
	kid (0.259471)
	mas (0.210305)
	tes (0.207814)
	fli (0.202881)
	nlu (0.191681)
	sag (0.182715)
	sin (0.174948)
	duo (0.172801)
	cli (0.152812)
	nca (0.136874)
	nmm (0.132802)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)