Ss1.1-Tes1-TES01A010067.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCAAGATGGCGGCGCCTTTGAGGATTCAGAGCGACTGGGCTCAAGCCCTCAGGAAGGAT GAAGGGGAGGCCTGGCTGAGCTGTCACCCCCCAGGGAAACCAACTTTGTACGGCAGCCTG ACTTGTCAAGGAATTGGCCTTGATGGCATCCCAGAGGTTATAGCTTCGGAAGGATTTGTT GTGAATGAAATAAACAAGAAGAGCATTCATATTTCATGTCCAAAGGAAAATGCATCTTCG AAGTTTTTGGCACCATATACTACTTTTTCAAGGATTCATGCAAAGAGTATAACATGCCTG GACATTTCCAGCGGAGGAGGCCTTGGGGTGTCTTCTAGTACCGATGGGAGCATGAAAATC TGGCAGGCTTCCAATGGAGAGCTCAGGAGAGTATTGGAAGGACATGTGTTTGATGTGAAT TGTTGCAGGTTTTTCCCATCAGGCCTTGTGGTTCTGAGTGGGGGAATGGACGCCCAGCTG AAGATCTGGTCAGCTGAAGATGCTAGCTGCGTAGTGACCTTTAAAGGTCACAAAGGAGGT ATCCTAGATACAGCTATTGTTGAGCGGGGCAAGAATGTGGTATCTGGTTCTCGAGATGGG ACAGCTCGACTTTGGGATTGCGGCCGCTCAGCCTGCCTGGGAGTCATTGCAGACTGTGGT TGTTCCATCAATGGAGTGGCTGTGGGTGCTGCTGACAACTCTATAAACCTCGGCTCCCCT GAGCAGACACCCAGCGAACGGGAGGTTGGAACAGAGTCGAAAATGCTGCTGTTGGCCCGC GAAGATAAGAAACTTCAGTGTGTGGGACTGCAGAGCAGGCAGCCGGTGTTCCTCTTTATT GGCTCAGATGCCTTCAACTGCTGTACTTTTCTCTCTGGCTTCTTGCTCTTGGCTGGGACA CAGGATGGAAACATTTATCAGCTGGATGTGAGGAATCCAAGGGCTCCGGTACAAGTCATC CACAGATCAGGAGCGCCAGTCCTGTCCCTGCTGAGTTTCAGAGACGGATTCATTGCTAGC CAAGGTGATGGAAGCTCTTTCATTGTCCAGCAAGACTTAGACTATGTCATTGAGCTCACT GGGGCTGACTGTGACCCTGTGTACAAGGTGGCCACATGGGAGAAGCAGATCTACACATGC TGTCGAGATGGTCTCGTGCGACGCTATCAGCTCTCTGACCTCTGACCCCTGGGAAGAGGA GTCCCAGTTATGACAAAGAGTGACCATGATCACCAGTGAACAGAAACATCCTCACGGACC ATGGAAGGAGCATGAGTGCCCTTTATTGAATGGGCACTGTTGGCAAGTCACAGAAAGTTG GCTGCAGTGGCCCATGTGAAACTATCATTCCATGGCAGGGCCTACCTTGAACAGAGTAGG AAGCTCACATGTGCACCCCGCATCTGTCCCACCTTCTTCCTGTATAAGCTCAGCCAGCAA CGTAGGACGAGGATGTGGATGCTTGCAGTTAGATCTCACCCTGACTCTGTAAAATGTTTA CAAGGACCCGAGGCCTAAAGCCTGTTCTGTGGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCAAGATGGCGGCGCCTTTGAGGATTCAGAGCGACTGGGCTCAAGCCCTCAGGAAGGAT GAAGGGGAGGCCTGGCTGAGCTGTCACCCCCCAGGGAAACCAACTTTGTACGGCAGCCTG ACTTGTCAAGGAATTGGCCTTGATGGCATCCCAGAGGTTATAGCTTCGGAAGGATTTGTT GTGAATGAAATAAACAAGAAGAGCATTCATATTTCATGTCCAAAGGAAAATGCATCTTCG AAGTTTTTGGCACCATATACTACTTTTTCAAGGATTCATGCAAAGAGTATAACATGCCTG GACATTTCCAGCGGAGGAGGCCTTGGGGTGTCTTCTAGTACCGATGGGAGCATGAAAATC TGGCAGGCTTCCAATGGAGAGCTCAGGAGAGTATTGGAAGGACATGTGTTTGATGTGAAT TGTTGCAGGTTTTTCCCATCAGGCCTTGTGGTTCTGAGTGGGGGAATGGACGCCCAGCTG AAGATCTGGTCAGCTGAAGATGCTAGCTGCGTAGTGACCTTTAAAGGTCACAAAGGAGGT ATCCTAGATACAGCTATTGTTGAGCGGGGCAAGAATGTGGTATCTGGTTCTCGAGATGGG ACAGCTCGACTTTGGGATTGCGGCCGCTCAGCCTGCCTGGGAGTCATTGCAGACTGTGGT TGTTCCATCAATGGAGTGGCTGTGGGTGCTGCTGACAACTCTATAAACCTCGGCTCCCCT GAGCAGACACCCAGCGAACGGGAGGTTGGAACAGAGTCGAAAATGCTGCTGTTGGCCCGC GAAGATAAGAAACTTCAGTGTGTGGGACTGCAGAGCAGGCAGCCGGTGTTCCTCTTTATT GGCTCAGATGCCTTCAACTGCTGTACTTTTCTCTCTGGCTTCTTGCTCTTGGCTGGGACA CAGGATGGAAACATTTATCAGCTGGATGTGAGGAATCCAAGGGCTCCGGTACAAGTCATC CACAGATCAGGAGCGCCAGTCCTGTCCCTGCTGAGTTTCAGAGACGGATTCATTGCTAGC CAAGGTGATGGAAGCTCTTTCATTGTCCAGCAAGACTTAGACTATGTCATTGAGCTCACT GGGGCTGACTGTGACCCTGTGTACAAGGTGGCCACATGGGAGAAGCAGATCTACACATGC TGTCGAGATGGTCTCGTGCGACGCTATCAGCTCTCTGACCTCTGACCCCTGGGAAGAGGA GTCCCAGTTATGACAAAGAGTGACCATGATCACCAGTGAACAGAAACATCCTCACGGACC ATGGAAGGAGCATGAGTGCCCTTTATTGAATGGGCACTGTTGGCAAGTCACAGAAAGTTG GCTGCAGTGGCCCATGTGAAACTATCATTCCATGGCAGGGCCTACCTTGAACAGAGTAGG AAGCTCACATGTGCACCCCGCATCTGTCCCACCTTCTTCCTGTATAAGCTCAGCCAGCAA CGTAGGACGAGGATGTGGATGCTTGCAGTTAGATCTCACCCTGACTCTGTAAAATGTTTA CAAGGACCCGAGGCCTAAAGCCTGTTCTGTGGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 93-184, + strand, RNAz p=0.518417 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 93-184, + strand, RNAz p=0.518417 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 93-198, gnl|bosTau2|chr15 (42189974-42190079) | |
| 93-198, gnl|canFam2|chr21 (27379728-27379598) | |
| 93-198, gnl|dasNov1|scaffold_23387 (12965-13095) | |
| 93-198, gnl|echTel1|scaffold_315570 (201508-201377) | |
| 93-198, gnl|galGal2|chr1 (187189336-187189226) | |
| 93-198, gnl|hg17|chr11 (73276023-73276153) | |
| 93-198, gnl|Hg17|chr11 (73276045-73276150) | |
| 93-198, gnl|loxAfr1|scaffold_1229 (85284-85411) | |
| 93-198, gnl|mm7|chr7 (96581452-96581329) | |
| 93-198, gnl|Mm7|chr7 (96581431-96581333) | |
| 93-198, gnl|monDom2|scaffold_74 (3593262-3593130) | |
| 93-198, gnl|panTro1|chr9 (74562033-74562163) | |
| 93-198, gnl|rheMac2|chr14 (72055699-72055829) | |
| 93-198, gnl|rn3|chr1 (158041674-158041553) | |
| 537-737, gnl|bosTau2|chr15 (42210249-42210449) | |
| 537-737, gnl|canFam2|chr21 (27358709-27358455) | |
| 537-737, gnl|galGal2|chr1 (187181425-187181184) | |
| 537-737, gnl|hg17|chr11 (73298049-73298298) | |
| 537-737, gnl|Hg17|chr11 (73298090-73298290) | |
| 537-737, gnl|loxAfr1|scaffold_85732 (9226-8974) | |
| 537-737, gnl|monDom2|scaffold_74 (3554666-3554421) | |
| 537-737, gnl|oryCun1|scaffold_208856 (78966-78739) | |
| 537-737, gnl|panTro1|chr9 (74581715-74581964) | |
| 537-737, gnl|rheMac2|chr14 (72078783-72079032) | |
| 537-737, gnl|xenTro1|scaffold_144 (1496867-1497120) | |
| 822-942, gnl|bosTau2|chr15 (42215277-42215397) | |
| 822-942, gnl|canFam2|chr21 (27351204-27351074) | |
| 822-942, gnl|echTel1|scaffold_280485 (9803-9673) | |
| 822-942, gnl|galGal2|chr1 (187179632-187179502) | |
| 822-942, gnl|hg17|chr11 (73305230-73305360) | |
| 822-942, gnl|Hg17|chr11 (73305234-73305354) | |
| 822-942, gnl|loxAfr1|scaffold_85732 (4620-4490) | |
| 822-942, gnl|monDom2|scaffold_74 (3547271-3547141) | |
| 822-942, gnl|oryCun1|scaffold_215438 (1397-1529) | |
| 822-942, gnl|panTro1|chr9 (74588899-74589029) | |
| 822-942, gnl|rheMac2|chr14 (72086502-72086632) | |
| 1098-1536, gnl|bosTau2|chr15 (42224240-42224674) | |
| 1098-1536, gnl|Hg17|chr11 (73315969-73316398) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-198, gnl|bosTau2|chr15 (42189974-42190079) | |
| 93-198, gnl|canFam2|chr21 (27379728-27379598) | |
| 93-198, gnl|dasNov1|scaffold_23387 (12965-13095) | |
| 93-198, gnl|echTel1|scaffold_315570 (201508-201377) | |
| 93-198, gnl|galGal2|chr1 (187189336-187189226) | |
| 93-198, gnl|hg17|chr11 (73276023-73276153) | |
| 93-198, gnl|Hg17|chr11 (73276045-73276150) | |
| 93-198, gnl|loxAfr1|scaffold_1229 (85284-85411) | |
| 93-198, gnl|mm7|chr7 (96581452-96581329) | |
| 93-198, gnl|Mm7|chr7 (96581431-96581333) | |
| 93-198, gnl|monDom2|scaffold_74 (3593262-3593130) | |
| 93-198, gnl|panTro1|chr9 (74562033-74562163) | |
| 93-198, gnl|rheMac2|chr14 (72055699-72055829) | |
| 93-198, gnl|rn3|chr1 (158041674-158041553) | |
| 537-737, gnl|bosTau2|chr15 (42210249-42210449) | |
| 537-737, gnl|canFam2|chr21 (27358709-27358455) | |
| 537-737, gnl|galGal2|chr1 (187181425-187181184) | |
| 537-737, gnl|hg17|chr11 (73298049-73298298) | |
| 537-737, gnl|Hg17|chr11 (73298090-73298290) | |
| 537-737, gnl|loxAfr1|scaffold_85732 (9226-8974) | |
| 537-737, gnl|monDom2|scaffold_74 (3554666-3554421) | |
| 537-737, gnl|oryCun1|scaffold_208856 (78966-78739) | |
| 537-737, gnl|panTro1|chr9 (74581715-74581964) | |
| 537-737, gnl|rheMac2|chr14 (72078783-72079032) | |
| 537-737, gnl|xenTro1|scaffold_144 (1496867-1497120) | |
| 822-942, gnl|bosTau2|chr15 (42215277-42215397) | |
| 822-942, gnl|canFam2|chr21 (27351204-27351074) | |
| 822-942, gnl|echTel1|scaffold_280485 (9803-9673) | |
| 822-942, gnl|galGal2|chr1 (187179632-187179502) | |
| 822-942, gnl|hg17|chr11 (73305230-73305360) | |
| 822-942, gnl|Hg17|chr11 (73305234-73305354) | |
| 822-942, gnl|loxAfr1|scaffold_85732 (4620-4490) | |
| 822-942, gnl|monDom2|scaffold_74 (3547271-3547141) | |
| 822-942, gnl|oryCun1|scaffold_215438 (1397-1529) | |
| 822-942, gnl|panTro1|chr9 (74588899-74589029) | |
| 822-942, gnl|rheMac2|chr14 (72086502-72086632) | |
| 1098-1536, gnl|bosTau2|chr15 (42224240-42224674) | |
| 1098-1536, gnl|Hg17|chr11 (73315969-73316398) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cov (0.132153) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |