Ss1.1-Tes1-TES01A020009.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCATCCGGGCCTCCCCAGCCTATCGCTCTCCTACGGAAGTGCGAGCCGGGACTTAGCG CATTTCGAGGCCACCGGAGGCCTGGCCTGGCCTGCCCTGGAGTAGCTCTGATTTGAGAGC GCGGCCGCGGGAGTATGGAGGGTCTCCCGGAGAGGGAGGCGCCTGCAGCGGCGCTGGCCG CAGTATTGAAGCACAGTTCGGCTCTGCCTTCCGAGAGCGCCCAGGTCCGGGGCTACGACT TCAACCGCGGTGTGGACTACCGCGCGCTGCTGGAGGCCTTCGGCACCACTGGTTTCCAGG CCACCAACTTCGGGCGCGCGGTACAGCAAGTCAACGCCATGATAGAGAAGAAACTGGAGC CACTGTCTCAGGATGAAGACCAGCATGCAGACCTGACTCAGAGCCGCCGCCCACTCACCG GCTGCACCATTTTTCTGGGCTACACATCCAATCTCATCAGTTCAGGCATTCGTGAGACCA TCCGTTACCTCGTGCAGCACAACATGGTGGACGTCTTGGTGACCACAGCTGGGGGTGTGG AGGAGGATCTCATCAAGTGTCTGGCGCCCACATACCTGGGCGAGTTCAGCCTCAGGGGGA AGGAGCTACGTGAGAATGGGATCAACAGGATTGGAAACCTGCTGGTGCCCAATGACAATT ACTGCAAGTTTGAGGACTGGCTGATGCCCATTCTGGACCAGATGGTGCTGGAGCAGAACA CAGAGGGTGTGAAGTGGACGCCTTCTAAGATGATCGCTCGGCTTGGCAAAGAGATAAACA ACCCAGAGTCTGTGTATTACTGGGCTCAGAAGAACCATATCCCTGTGTTGAGCCCGGCAC TCACAGATGGCTCGCTGGGTGACATGATCTTCTTCCATTCCTATAAGAACCCAGGCCTGG TTCTGGACATCGTTGAGGACCTGAGGCTCATCAACACACAGGCCATCTTCGCCAAGCGCT CTGGGATGATCATCCTGGGTGGTGGCATGGTCAAGCACCACATTGCCAACGCCAACCTCA TGCGGAATGGGGCTGACTATGCGGTCTACATCAACACAGCCCAGGAGTTTGATGGCTCTG ATTCAGGCGCCCGGCCCGATGAGGCTGTCTCTTGGGGCAAGATCCGGATGGATGCACAGC CGGTCAAGGTCTATGCTGATGCTTCCCTGGTCTTCCCACTGCTCGTGGCTGAAACCTTTG CCCAGAAGGCCAATGCCTTTATGCCCGAAAAGAACGAGGACTGAACACTGGATGGTGCAG CCCCAGGGAGGCCTCACCCCTCCTTTATTTATTAGTTTGCAGACCCAGCCAGCCTCTTCC CCACTCCCTGGTCAACAGCATCTCTAGAATAAATGGTCTCAGTGGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCATCCGGGCCTCCCCAGCCTATCGCTCTCCTACGGAAGTGCGAGCCGGGACTTAGCG CATTTCGAGGCCACCGGAGGCCTGGCCTGGCCTGCCCTGGAGTAGCTCTGATTTGAGAGC GCGGCCGCGGGAGTATGGAGGGTCTCCCGGAGAGGGAGGCGCCTGCAGCGGCGCTGGCCG CAGTATTGAAGCACAGTTCGGCTCTGCCTTCCGAGAGCGCCCAGGTCCGGGGCTACGACT TCAACCGCGGTGTGGACTACCGCGCGCTGCTGGAGGCCTTCGGCACCACTGGTTTCCAGG CCACCAACTTCGGGCGCGCGGTACAGCAAGTCAACGCCATGATAGAGAAGAAACTGGAGC CACTGTCTCAGGATGAAGACCAGCATGCAGACCTGACTCAGAGCCGCCGCCCACTCACCG GCTGCACCATTTTTCTGGGCTACACATCCAATCTCATCAGTTCAGGCATTCGTGAGACCA TCCGTTACCTCGTGCAGCACAACATGGTGGACGTCTTGGTGACCACAGCTGGGGGTGTGG AGGAGGATCTCATCAAGTGTCTGGCGCCCACATACCTGGGCGAGTTCAGCCTCAGGGGGA AGGAGCTACGTGAGAATGGGATCAACAGGATTGGAAACCTGCTGGTGCCCAATGACAATT ACTGCAAGTTTGAGGACTGGCTGATGCCCATTCTGGACCAGATGGTGCTGGAGCAGAACA CAGAGGGTGTGAAGTGGACGCCTTCTAAGATGATCGCTCGGCTTGGCAAAGAGATAAACA ACCCAGAGTCTGTGTATTACTGGGCTCAGAAGAACCATATCCCTGTGTTGAGCCCGGCAC TCACAGATGGCTCGCTGGGTGACATGATCTTCTTCCATTCCTATAAGAACCCAGGCCTGG TTCTGGACATCGTTGAGGACCTGAGGCTCATCAACACACAGGCCATCTTCGCCAAGCGCT CTGGGATGATCATCCTGGGTGGTGGCATGGTCAAGCACCACATTGCCAACGCCAACCTCA TGCGGAATGGGGCTGACTATGCGGTCTACATCAACACAGCCCAGGAGTTTGATGGCTCTG ATTCAGGCGCCCGGCCCGATGAGGCTGTCTCTTGGGGCAAGATCCGGATGGATGCACAGC CGGTCAAGGTCTATGCTGATGCTTCCCTGGTCTTCCCACTGCTCGTGGCTGAAACCTTTG CCCAGAAGGCCAATGCCTTTATGCCCGAAAAGAACGAGGACTGAACACTGGATGGTGCAG CCCCAGGGAGGCCTCACCCCTCCTTTATTTATTAGTTTGCAGACCCAGCCAGCCTCTTCC CCACTCCCTGGTCAACAGCATCTCTAGAATAAATGGTCTCAGTGGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 89-208, - strand, RNAz p=0.978018 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 89-208, - strand, RNAz p=0.978018 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 14-341, gnl|bosTau2|chr7 (8403672-8403355) | |
| 14-341, gnl|Hg17|chr19 (12653692-12653374) | |
| 14-341, gnl|Mm7|chr8 (83660520-83660833) | |
| 506-629, gnl|bosTau2|chr7 (8402424-8402301) | |
| 506-629, gnl|canFam2|chr20 (52439605-52439465) | |
| 506-629, gnl|danRer3|chr6 (6636628-6636756) | |
| 506-629, gnl|dasNov1|scaffold_88025 (272-384) | |
| 506-629, gnl|echTel1|scaffold_310786 (41562-41702) | |
| 506-629, gnl|fr1|chrUn (124028885-124029010) | |
| 506-629, gnl|hg17|chr19 (12651604-12651743) | |
| 506-629, gnl|Hg17|chr19 (12651737-12651614) | |
| 506-629, gnl|mm7|chr8 (83662212-83662070) | |
| 506-629, gnl|Mm7|chr8 (83662074-83662197) | |
| 506-629, gnl|monDom2|scaffold_106 (3742321-3742455) | |
| 506-629, gnl|oryCun1|scaffold_147532 (255-404) | |
| 506-629, gnl|panTro1|chr20 (13186252-13186391) | |
| 506-629, gnl|rheMac2|chr19 (12337369-12337508) | |
| 506-629, gnl|rn3|chr19 (24745999-24746137) | |
| 506-629, gnl|tetNig1|chr3 (8544033-8544150) | |
| 506-629, gnl|xenTro1|scaffold_781 (576625-576765) | |
| 811-918, gnl|bosTau2|chr7 (8401524-8401417) | |
| 811-918, gnl|Hg17|chr19 (12649212-12649105) | |
| 811-918, gnl|Mm7|chr8 (83662990-83663097) | |
| 1147-1368, gnl|bosTau2|chr7 (8400187-8399969) | |
| 1147-1368, gnl|Hg17|chr19 (12647749-12647536) | |
| 1147-1368, gnl|Mm7|chr8 (83663713-83663931) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-341, gnl|bosTau2|chr7 (8403672-8403355) | |
| 14-341, gnl|Hg17|chr19 (12653692-12653374) | |
| 14-341, gnl|Mm7|chr8 (83660520-83660833) | |
| 506-629, gnl|bosTau2|chr7 (8402424-8402301) | |
| 506-629, gnl|canFam2|chr20 (52439605-52439465) | |
| 506-629, gnl|danRer3|chr6 (6636628-6636756) | |
| 506-629, gnl|dasNov1|scaffold_88025 (272-384) | |
| 506-629, gnl|echTel1|scaffold_310786 (41562-41702) | |
| 506-629, gnl|fr1|chrUn (124028885-124029010) | |
| 506-629, gnl|hg17|chr19 (12651604-12651743) | |
| 506-629, gnl|Hg17|chr19 (12651737-12651614) | |
| 506-629, gnl|mm7|chr8 (83662212-83662070) | |
| 506-629, gnl|Mm7|chr8 (83662074-83662197) | |
| 506-629, gnl|monDom2|scaffold_106 (3742321-3742455) | |
| 506-629, gnl|oryCun1|scaffold_147532 (255-404) | |
| 506-629, gnl|panTro1|chr20 (13186252-13186391) | |
| 506-629, gnl|rheMac2|chr19 (12337369-12337508) | |
| 506-629, gnl|rn3|chr19 (24745999-24746137) | |
| 506-629, gnl|tetNig1|chr3 (8544033-8544150) | |
| 506-629, gnl|xenTro1|scaffold_781 (576625-576765) | |
| 811-918, gnl|bosTau2|chr7 (8401524-8401417) | |
| 811-918, gnl|Hg17|chr19 (12649212-12649105) | |
| 811-918, gnl|Mm7|chr8 (83662990-83663097) | |
| 1147-1368, gnl|bosTau2|chr7 (8400187-8399969) | |
| 1147-1368, gnl|Hg17|chr19 (12647749-12647536) | |
| 1147-1368, gnl|Mm7|chr8 (83663713-83663931) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| csp (0.322373) | |
| cag (0.302389) | |
| eje (0.296501) | |
| hea (0.204499) | |
| fli (0.202881) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| ecc (0.115035) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| cag (0.302389) | |
| eje (0.296501) | |
| hea (0.204499) | |
| fli (0.202881) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| ecc (0.115035) |