Non-Coding RNA Search

Ss1.1-Tes1-TES01A020049.5

Sequence:


               
               GGAGGCGGACCTCTTTTCGTGCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACATCTG
AAGCGCGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGACCGGTGTGTTTGCTCCT
CGTCCATCTACTGGTCCCCACAAGTTGAGGGAATGTCTCCCCCTCATTATTTTCCTAAGG
AACAGACTTAAGTATGCCCTAACAGGAGATGAAGTAAAGAAGATATGCATGCAGCGTTTC
ATTAAGATAGACGGCAAGGTCCGCACTGATATAACCTACCCCGCTGGTTTTATGGATGTC
ATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGCCGTTTT
GCTGTTCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATA
TTTGTGGGCACAAAAGGAATCCCTCACCTGGTCACCCACGATGCCCGTACCATCCGCTAC
CCTGATCCCCTCATCAAGGTGAATGACACCATTCAAATTGATTTGGAGACTGGCAAGATC
ACTGATTTCATCAAATTTGATACTGGTAACCTATGCATGGTGACTGGAGGTGCTAACCTG
GGAAGAATTGGTGTGATCACCAACAGGGAGAGACATCCTGGTTCTTTCGATGTAGTCCAT
GTGAAAGATGCCAATGGCAACAGCTTCGCCACCCGGCTCTCCAACATTTTCGTTATTGGC
AAAGGCAACAAACCATGGATCTCTCTTCCCCGTGGAAAGGGTATTCGCCTCACCATTGCT
GAGGAGAGAGACAAGAGACTGGCGGCCAAACAGAGCAGTGGATAAAATGATCTATAGGTG
ACATGATTGGAAAAGTCTTTATACTTAATTAATTAAAGATTGCCGCATAAAAAAAAAAAA
AAAAAAAAAAAAGTGGTTTGGGATTTAGATTTTCCTTTCTACTTCTCTGACATGAAAAGT
AGATTGAATTTTTAAGGCGGGCTTAGGCATTCCAGATGTGGATTTCCTGTGTCTCCTGTA
GGCTAGGCTTGGGTGGTGGTGGGAGGGAGGGAGAACACATCAAACTTGGCAAAGAGGGAG
CAGCAAGTAACTCAATAATGGAGAGTGCCAGGGAAGCCCATAATGTCAAGCCCTCTTACT
TGGGCTAGGAACTTAGCTACCCTGATAGGTTGTTAGCTTGTGAAAACAAAAAAAAATCAG
TGTCCTTATCTTTATTGTACTACCGCATCCATGAGCCTGGCTCATCTGTTTTCCCCTTTC
CTGTGCCCAGCTTTCCAAATGGCAGGGTGAAAAATGTCCAATTGGAAGCAGTGAGATCCT
GTATAGCACAGGGAACTATGTCTAGTCACTTGTGATGGATCATGATGGAGGATAATGTGA
GAAAAAGAATGTATATATATATGTGTGTGTGACTGGTTCACTTTGCTGTATAGTAGAAAA
TTGACAACACTGTAAACCAACTATAATGGAAAAAAATAAAAATCATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCGGACCTCTTTTCGTGCCTAGCGCAGCCATGGCTCGTGGTCCCAAGAAACATCTG
AAGCGCGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGACCGGTGTGTTTGCTCCT
CGTCCATCTACTGGTCCCCACAAGTTGAGGGAATGTCTCCCCCTCATTATTTTCCTAAGG
AACAGACTTAAGTATGCCCTAACAGGAGATGAAGTAAAGAAGATATGCATGCAGCGTTTC
ATTAAGATAGACGGCAAGGTCCGCACTGATATAACCTACCCCGCTGGTTTTATGGATGTC
ATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGCCGTTTT
GCTGTTCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATA
TTTGTGGGCACAAAAGGAATCCCTCACCTGGTCACCCACGATGCCCGTACCATCCGCTAC
CCTGATCCCCTCATCAAGGTGAATGACACCATTCAAATTGATTTGGAGACTGGCAAGATC
ACTGATTTCATCAAATTTGATACTGGTAACCTATGCATGGTGACTGGAGGTGCTAACCTG
GGAAGAATTGGTGTGATCACCAACAGGGAGAGACATCCTGGTTCTTTCGATGTAGTCCAT
GTGAAAGATGCCAATGGCAACAGCTTCGCCACCCGGCTCTCCAACATTTTCGTTATTGGC
AAAGGCAACAAACCATGGATCTCTCTTCCCCGTGGAAAGGGTATTCGCCTCACCATTGCT
GAGGAGAGAGACAAGAGACTGGCGGCCAAACAGAGCAGTGGATAAAATGATCTATAGGTG
ACATGATTGGAAAAGTCTTTATACTTAATTAATTAAAGATTGCCGCATAAAAAAAAAAAA
AAAAAAAAAAAAGTGGTTTGGGATTTAGATTTTCCTTTCTACTTCTCTGACATGAAAAGT
AGATTGAATTTTTAAGGCGGGCTTAGGCATTCCAGATGTGGATTTCCTGTGTCTCCTGTA
GGCTAGGCTTGGGTGGTGGTGGGAGGGAGGGAGAACACATCAAACTTGGCAAAGAGGGAG
CAGCAAGTAACTCAATAATGGAGAGTGCCAGGGAAGCCCATAATGTCAAGCCCTCTTACT
TGGGCTAGGAACTTAGCTACCCTGATAGGTTGTTAGCTTGTGAAAACAAAAAAAAATCAG
TGTCCTTATCTTTATTGTACTACCGCATCCATGAGCCTGGCTCATCTGTTTTCCCCTTTC
CTGTGCCCAGCTTTCCAAATGGCAGGGTGAAAAATGTCCAATTGGAAGCAGTGAGATCCT
GTATAGCACAGGGAACTATGTCTAGTCACTTGTGATGGATCATGATGGAGGATAATGTGA
GAAAAAGAATGTATATATATATGTGTGTGTGACTGGTTCACTTTGCTGTATAGTAGAAAA
TTGACAACACTGTAAACCAACTATAATGGAAAAAAATAAAAATCATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56090273|ref|NP_001007601.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56090273|ref|NP_001007601.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               247-1477, - strand, RNAz p=0.999882
               

               
               685-804, + strand, RNAz p=0.922687

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-1477, - strand, RNAz p=0.999882
               

               
               685-804, + strand, RNAz p=0.922687

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               3-913, gnl|bosTau2|chr16 (20041421-20042326)
               

               
               3-913, gnl|Hg17|chr12 (98906115-98905230)
               

               
               3-913, gnl|Mm7|chr13 (3183234-3184143)
               


               
               8-906, gnl|bosTau2|chr11 (34979437-34980327)
               

               
               8-906, gnl|Hg17|chr20 (4558888-4557998)
               

               
               8-906, gnl|Mm7|chr2 (83197691-83196835)
               


               
               1306-1520, gnl|bosTau2|chr17 (32027376-32027163)
               


               
               1319-1511, gnl|bosTau2|chr10 (49923349-49923154)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-913, gnl|bosTau2|chr16 (20041421-20042326)
               

               
               3-913, gnl|Hg17|chr12 (98906115-98905230)
               

               
               3-913, gnl|Mm7|chr13 (3183234-3184143)
               


               
               8-906, gnl|bosTau2|chr11 (34979437-34980327)
               

               
               8-906, gnl|Hg17|chr20 (4558888-4557998)
               

               
               8-906, gnl|Mm7|chr2 (83197691-83196835)
               


               
               1306-1520, gnl|bosTau2|chr17 (32027376-32027163)
               


               
               1319-1511, gnl|bosTau2|chr10 (49923349-49923154)

Expressed library(ies): 96 entry(ies)

More info

Expressed library(ies): 96 entry(ies)

Help | Less info


               
               elu (5.00963)
               

               
               mgp (4.84429)
               

               
               sto (4.49559)
               

               
               lyg (4.39239)
               

               
               cmu (3.72787)
               

               
               spl (3.57961)
               

               
               ova (3.48657)
               

               
               eje (3.36035)
               

               
               lin (3.34886)
               

               
               sag (3.28887)
               

               
               mcp (3.24232)
               

               
               tra (3.20039)
               

               
               ski (3.08144)
               

               
               liv (2.92569)
               

               
               bla (2.85999)
               

               
               rec (2.76912)
               

               
               mga (2.56328)
               

               
               cga (2.51186)
               

               
               gul (2.30865)
               

               
               sug (2.29124)
               

               
               csk (2.25194)
               

               
               cly (2.17155)
               

               
               aor (2.14802)
               

               
               pty (2.14072)
               

               
               fat (2.06398)
               

               
               ece (2.06375)
               

               
               tbr (2.00432)
               

               
               vin (1.99534)
               

               
               csp (1.93424)
               

               
               fty (1.93424)
               

               
               ill (1.93152)
               

               
               thg (1.90186)
               

               
               ese (1.89753)
               

               
               ssp (1.89728)
               

               
               ret (1.80227)
               

               
               nco (1.77907)
               

               
               eep (1.7159)
               

               
               cut (1.69924)
               

               
               cag (1.66314)
               

               
               hea (1.63599)
               

               
               cov (1.58583)
               

               
               lnt (1.56539)
               

               
               pro (1.5361)
               

               
               med (1.51128)
               

               
               nca (1.50561)
               

               
               nje (1.49328)
               

               
               mgm (1.44274)
               

               
               sin (1.39958)
               

               
               eye (1.36402)
               

               
               isp (1.35338)
               

               
               nlu (1.34177)
               

               
               nbm (1.29122)
               

               
               duo (1.20961)
               

               
               bfe (1.19886)
               

               
               cbe (1.19617)
               

               
               fcc (1.18671)
               

               
               jej (1.08814)
               

               
               fce (1.08637)
               

               
               ldo (1.06703)
               

               
               nmm (1.06242)
               

               
               jca (1.02564)
               

               
               eru (0.960384)
               

               
               pgl (0.947867)
               

               
               pan (0.943841)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               fbs (0.876732)
               

               
               mas (0.84122)
               

               
               tes (0.831255)
               

               
               ecc (0.805246)
               

               
               spc (0.793561)
               

               
               col (0.780031)
               

               
               eli (0.759071)
               

               
               nep (0.7357)
               

               
               ebs (0.709807)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               hlv (0.696282)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               fco (0.628832)
               

               
               cli (0.611247)
               

               
               fli (0.608643)
               

               
               cte (0.58548)
               

               
               ste (0.540833)
               

               
               clu (0.478583)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               che (0.272628)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               cbr (0.127975)
               

               
               cbl (0.114797)

Expressed library(ies): 96 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (5.00963)
               

               
               mgp (4.84429)
               

               
               sto (4.49559)
               

               
               lyg (4.39239)
               

               
               cmu (3.72787)
               

               
               spl (3.57961)
               

               
               ova (3.48657)
               

               
               eje (3.36035)
               

               
               lin (3.34886)
               

               
               sag (3.28887)
               

               
               mcp (3.24232)
               

               
               tra (3.20039)
               

               
               ski (3.08144)
               

               
               liv (2.92569)
               

               
               bla (2.85999)
               

               
               rec (2.76912)
               

               
               mga (2.56328)
               

               
               cga (2.51186)
               

               
               gul (2.30865)
               

               
               sug (2.29124)
               

               
               csk (2.25194)
               

               
               cly (2.17155)
               

               
               aor (2.14802)
               

               
               pty (2.14072)
               

               
               fat (2.06398)
               

               
               ece (2.06375)
               

               
               tbr (2.00432)
               

               
               vin (1.99534)
               

               
               csp (1.93424)
               

               
               fty (1.93424)
               

               
               ill (1.93152)
               

               
               thg (1.90186)
               

               
               ese (1.89753)
               

               
               ssp (1.89728)
               

               
               ret (1.80227)
               

               
               nco (1.77907)
               

               
               eep (1.7159)
               

               
               cut (1.69924)
               

               
               cag (1.66314)
               

               
               hea (1.63599)
               

               
               cov (1.58583)
               

               
               lnt (1.56539)
               

               
               pro (1.5361)
               

               
               med (1.51128)
               

               
               nca (1.50561)
               

               
               nje (1.49328)
               

               
               mgm (1.44274)
               

               
               sin (1.39958)
               

               
               eye (1.36402)
               

               
               isp (1.35338)
               

               
               nlu (1.34177)
               

               
               nbm (1.29122)
               

               
               duo (1.20961)
               

               
               bfe (1.19886)
               

               
               cbe (1.19617)
               

               
               fcc (1.18671)
               

               
               jej (1.08814)
               

               
               fce (1.08637)
               

               
               ldo (1.06703)
               

               
               nmm (1.06242)
               

               
               jca (1.02564)
               

               
               eru (0.960384)
               

               
               pgl (0.947867)
               

               
               pan (0.943841)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               fbs (0.876732)
               

               
               mas (0.84122)
               

               
               tes (0.831255)
               

               
               ecc (0.805246)
               

               
               spc (0.793561)
               

               
               col (0.780031)
               

               
               eli (0.759071)
               

               
               nep (0.7357)
               

               
               ebs (0.709807)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               hlv (0.696282)
               

               
               fhi (0.678311)
               

               
               ute (0.663922)
               

               
               fco (0.628832)
               

               
               cli (0.611247)
               

               
               fli (0.608643)
               

               
               cte (0.58548)
               

               
               ste (0.540833)
               

               
               clu (0.478583)
               

               
               hyp (0.42851)
               

               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               che (0.272628)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               cbr (0.127975)
               

               
               cbl (0.114797)

	247-1477, - strand, RNAz p=0.999882
	685-804, + strand, RNAz p=0.922687

	3-913, gnl\|bosTau2\|chr16 (20041421-20042326)
	3-913, gnl\|Hg17\|chr12 (98906115-98905230)
	3-913, gnl\|Mm7\|chr13 (3183234-3184143)

	8-906, gnl\|bosTau2\|chr11 (34979437-34980327)
	8-906, gnl\|Hg17\|chr20 (4558888-4557998)
	8-906, gnl\|Mm7\|chr2 (83197691-83196835)

	1306-1520, gnl\|bosTau2\|chr17 (32027376-32027163)

	1319-1511, gnl\|bosTau2\|chr10 (49923349-49923154)

	elu (5.00963)
	mgp (4.84429)
	sto (4.49559)
	lyg (4.39239)
	cmu (3.72787)
	spl (3.57961)
	ova (3.48657)
	eje (3.36035)
	lin (3.34886)
	sag (3.28887)
	mcp (3.24232)
	tra (3.20039)
	ski (3.08144)
	liv (2.92569)
	bla (2.85999)
	rec (2.76912)
	mga (2.56328)
	cga (2.51186)
	gul (2.30865)
	sug (2.29124)
	csk (2.25194)
	cly (2.17155)
	aor (2.14802)
	pty (2.14072)
	fat (2.06398)
	ece (2.06375)
	tbr (2.00432)
	vin (1.99534)
	csp (1.93424)
	fty (1.93424)
	ill (1.93152)
	thg (1.90186)
	ese (1.89753)
	ssp (1.89728)
	ret (1.80227)
	nco (1.77907)
	eep (1.7159)
	cut (1.69924)
	cag (1.66314)
	hea (1.63599)
	cov (1.58583)
	lnt (1.56539)
	pro (1.5361)
	med (1.51128)
	nca (1.50561)
	nje (1.49328)
	mgm (1.44274)
	sin (1.39958)
	eye (1.36402)
	isp (1.35338)
	nlu (1.34177)
	nbm (1.29122)
	duo (1.20961)
	bfe (1.19886)
	cbe (1.19617)
	fcc (1.18671)
	jej (1.08814)
	fce (1.08637)
	ldo (1.06703)
	nmm (1.06242)
	jca (1.02564)
	eru (0.960384)
	pgl (0.947867)
	pan (0.943841)
	sme (0.91631)
	lun (0.902935)
	fbs (0.876732)
	mas (0.84122)
	tes (0.831255)
	ecc (0.805246)
	spc (0.793561)
	col (0.780031)
	eli (0.759071)
	nep (0.7357)
	ebs (0.709807)
	ton (0.702001)
	cst (0.700182)
	hlv (0.696282)
	fhi (0.678311)
	ute (0.663922)
	fco (0.628832)
	cli (0.611247)
	fli (0.608643)
	cte (0.58548)
	ste (0.540833)
	clu (0.478583)
	hyp (0.42851)
	amn (0.417711)
	kid (0.389206)
	cje (0.330469)
	cty (0.31224)
	che (0.272628)
	cki (0.165235)
	ctl (0.153069)
	cbr (0.127975)
	cbl (0.114797)