Ss1.1-Tes1-TES01A030047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCGCACATCTGAAGTCGTGCTTCCCTCCGCGTCCACGGCGGAAACCCGGCCAGAGCGC GGACTTCCACCCCAGCGTCGTATTCTGACCCGGTTGACGTCGCCTTGTCCCGCCCCTGAA AACGGAATTAAAGTCCTCCGAGAACGAGCGAGACGGTGTGACGAGTCCAGAGGCAGCACA GGTGGCAGATTTAACCCCTTCTCTTGTGAGTCATGGTAGCACCCATGCAGGGCCAAGTGT GCGTGGTGACAGGTGCTTCCAGGGGTATTGGCCGTGGCATCGCTTTACAGCTCTGCGAAG CAGGTGCCACAGTTTACATCACTGGCCGCCATCTTGACACGCTGCAGGTCACTGCCCAGG AGGCGCAATCCCGAGGGGGCCGGTGTGTGCCTGTGGTGTGTGATTCAAGCCAGGAGAGTG AAGTGCAAAGCCTATTTCAGCAGGTGGCTCGAGAACAGCAGGGGCGTCTAGATGTGCTGG TCAACAATGCCTATGCTGGTGTCCAGGCGATCATAAACAATAGGAAGAAGGCATTCTGGG AAAGCCCTGCCTCCGTTTGGGATGATGTCAACAACGTGGGACTCAGAGGCCACTACTTGT GCTCGGTGTATGCAGCACGGCTGATGGTACCAGCTGGCCGGGGGCTCATTGTGATCATCT CCTCCATTGGGGGGCTGCAGTATCTCTTCAGTGTCCCCTATGGTGTGGGCAAAGCTGCGT GCGACAGGCTGGCTGCCGACTGTGCCCAGGAGCTGCGGCGCCACGGGGTCAGCTACGTGT CTCTGTGGCCAGGGTTGGTGCAGACAGAAACGCTGAAGGAGTACATGATAAAGGCTGACA CTGCTGATGACCACATGATTGAGCAGATCAAATTGCCCATTCTCATCCGCGGAGACCACA GAAATGAGTGGCAAATGTGTGGTGGCACTGGCAACAGACCCCAATATCCTGAGCCTGAGC GGGAAGGTGCTGCCATCCTGTGACCTGGCGCGGCGCTATGGCCTACGGGACGTGGATGGC CGCCCCGTCCAGGACTACTTGTCTGTGAGCTCTGTTCTCTCCCACATCCCCAGCCTGAGC TGGATGGCCTCCTTCTTGCCCAGCTTCCTCCGAATGCCCAAGTGGCTTATGACCCTGTAC ACCAGCAAGTTCTAACTGTCCTGGTTGGACACCACTCTGCTTCCCTTCAGACTGAGTGGT CAGCCTGTCTCCGTGGAGTCGGGCAACCTTTCCCCCCTGTCTGCTGATACCCCTGATCTG AAGAGAAGGCCTCCGCCATGCGTCCTGGCTGAGCCCTAGGGACCTCTTGAGGTCCTTCTT AGGTTTTCCTTGCCCCTGCCTTTTACTTTTTGCCTTGGTATAGAAAAATGCTCTAGGGGC CTAATAAAGGGTTGTCCTCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCGCACATCTGAAGTCGTGCTTCCCTCCGCGTCCACGGCGGAAACCCGGCCAGAGCGC GGACTTCCACCCCAGCGTCGTATTCTGACCCGGTTGACGTCGCCTTGTCCCGCCCCTGAA AACGGAATTAAAGTCCTCCGAGAACGAGCGAGACGGTGTGACGAGTCCAGAGGCAGCACA GGTGGCAGATTTAACCCCTTCTCTTGTGAGTCATGGTAGCACCCATGCAGGGCCAAGTGT GCGTGGTGACAGGTGCTTCCAGGGGTATTGGCCGTGGCATCGCTTTACAGCTCTGCGAAG CAGGTGCCACAGTTTACATCACTGGCCGCCATCTTGACACGCTGCAGGTCACTGCCCAGG AGGCGCAATCCCGAGGGGGCCGGTGTGTGCCTGTGGTGTGTGATTCAAGCCAGGAGAGTG AAGTGCAAAGCCTATTTCAGCAGGTGGCTCGAGAACAGCAGGGGCGTCTAGATGTGCTGG TCAACAATGCCTATGCTGGTGTCCAGGCGATCATAAACAATAGGAAGAAGGCATTCTGGG AAAGCCCTGCCTCCGTTTGGGATGATGTCAACAACGTGGGACTCAGAGGCCACTACTTGT GCTCGGTGTATGCAGCACGGCTGATGGTACCAGCTGGCCGGGGGCTCATTGTGATCATCT CCTCCATTGGGGGGCTGCAGTATCTCTTCAGTGTCCCCTATGGTGTGGGCAAAGCTGCGT GCGACAGGCTGGCTGCCGACTGTGCCCAGGAGCTGCGGCGCCACGGGGTCAGCTACGTGT CTCTGTGGCCAGGGTTGGTGCAGACAGAAACGCTGAAGGAGTACATGATAAAGGCTGACA CTGCTGATGACCACATGATTGAGCAGATCAAATTGCCCATTCTCATCCGCGGAGACCACA GAAATGAGTGGCAAATGTGTGGTGGCACTGGCAACAGACCCCAATATCCTGAGCCTGAGC GGGAAGGTGCTGCCATCCTGTGACCTGGCGCGGCGCTATGGCCTACGGGACGTGGATGGC CGCCCCGTCCAGGACTACTTGTCTGTGAGCTCTGTTCTCTCCCACATCCCCAGCCTGAGC TGGATGGCCTCCTTCTTGCCCAGCTTCCTCCGAATGCCCAAGTGGCTTATGACCCTGTAC ACCAGCAAGTTCTAACTGTCCTGGTTGGACACCACTCTGCTTCCCTTCAGACTGAGTGGT CAGCCTGTCTCCGTGGAGTCGGGCAACCTTTCCCCCCTGTCTGCTGATACCCCTGATCTG AAGAGAAGGCCTCCGCCATGCGTCCTGGCTGAGCCCTAGGGACCTCTTGAGGTCCTTCTT AGGTTTTCCTTGCCCCTGCCTTTTACTTTTTGCCTTGGTATAGAAAAATGCTCTAGGGGC CTAATAAAGGGTTGTCCTCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 224-1387, + strand, RNAz p=0.885975 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 224-1387, + strand, RNAz p=0.885975 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_138452, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 186-363, gnl|bosTau2|chr10 (12202805-12202983) | |
| 186-363, gnl|canFam2|chr8 (7275030-7275174) | |
| 186-363, gnl|danRer3|chr2 (34118294-34118394) | |
| 186-363, gnl|dasNov1|scaffold_21827 (10230-10086) | |
| 186-363, gnl|echTel1|scaffold_298600 (4585-4729) | |
| 186-363, gnl|fr1|chrUn (36797145-36797258) | |
| 186-363, gnl|hg17|chr14 (23837999-23838143) | |
| 186-363, gnl|Hg17|chr14 (23838179-23838002) | |
| 186-363, gnl|loxAfr1|scaffold_49376 (36757-36901) | |
| 186-363, gnl|mm7|chr14 (50612267-50612411) | |
| 186-363, gnl|Mm7|chr14 (50612444-50612270) | |
| 186-363, gnl|monDom2|scaffold_12 (25414161-25414017) | |
| 186-363, gnl|oryCun1|scaffold_76020 (249-105) | |
| 186-363, gnl|panTro1|chr15 (22742265-22742409) | |
| 186-363, gnl|rheMac2|chr7 (87194527-87194671) | |
| 186-363, gnl|rn3|chr15 (33922940-33923084) | |
| 186-363, gnl|tetNig1|chr15 (2137198-2137318) | |
| 585-719, gnl|bosTau2|chr10 (12209021-12209155) | |
| 585-719, gnl|canFam2|chr8 (7271477-7271616) | |
| 585-719, gnl|danRer3|chr2 (34116881-34117020) | |
| 585-719, gnl|dasNov1|scaffold_21827 (16803-16664) | |
| 585-719, gnl|echTel1|scaffold_293929 (51538-51677) | |
| 585-719, gnl|fr1|chrUn (36796437-36796576) | |
| 585-719, gnl|hg17|chr14 (23831694-23831833) | |
| 585-719, gnl|Hg17|chr14 (23831832-23831698) | |
| 585-719, gnl|loxAfr1|scaffold_118346 (4062-4201) | |
| 585-719, gnl|mm7|chr14 (50608532-50608671) | |
| 585-719, gnl|Mm7|chr14 (50608670-50608536) | |
| 585-719, gnl|monDom2|scaffold_12 (25420578-25420439) | |
| 585-719, gnl|oryCun1|scaffold_178102 (178590-178729) | |
| 585-719, gnl|panTro1|chr15 (22735936-22736075) | |
| 585-719, gnl|rheMac2|chr7 (87188761-87188900) | |
| 585-719, gnl|rn3|chr15 (33918463-33918602) | |
| 585-719, gnl|tetNig1|chr15 (2136520-2136659) | |
| 1018-1387, gnl|bosTau2|chr10 (12210815-12211183) | |
| 1018-1387, gnl|Hg17|chr14 (23830042-23829664) | |
| 1018-1387, gnl|Mm7|chr14 (50606774-50606396) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-363, gnl|bosTau2|chr10 (12202805-12202983) | |
| 186-363, gnl|canFam2|chr8 (7275030-7275174) | |
| 186-363, gnl|danRer3|chr2 (34118294-34118394) | |
| 186-363, gnl|dasNov1|scaffold_21827 (10230-10086) | |
| 186-363, gnl|echTel1|scaffold_298600 (4585-4729) | |
| 186-363, gnl|fr1|chrUn (36797145-36797258) | |
| 186-363, gnl|hg17|chr14 (23837999-23838143) | |
| 186-363, gnl|Hg17|chr14 (23838179-23838002) | |
| 186-363, gnl|loxAfr1|scaffold_49376 (36757-36901) | |
| 186-363, gnl|mm7|chr14 (50612267-50612411) | |
| 186-363, gnl|Mm7|chr14 (50612444-50612270) | |
| 186-363, gnl|monDom2|scaffold_12 (25414161-25414017) | |
| 186-363, gnl|oryCun1|scaffold_76020 (249-105) | |
| 186-363, gnl|panTro1|chr15 (22742265-22742409) | |
| 186-363, gnl|rheMac2|chr7 (87194527-87194671) | |
| 186-363, gnl|rn3|chr15 (33922940-33923084) | |
| 186-363, gnl|tetNig1|chr15 (2137198-2137318) | |
| 585-719, gnl|bosTau2|chr10 (12209021-12209155) | |
| 585-719, gnl|canFam2|chr8 (7271477-7271616) | |
| 585-719, gnl|danRer3|chr2 (34116881-34117020) | |
| 585-719, gnl|dasNov1|scaffold_21827 (16803-16664) | |
| 585-719, gnl|echTel1|scaffold_293929 (51538-51677) | |
| 585-719, gnl|fr1|chrUn (36796437-36796576) | |
| 585-719, gnl|hg17|chr14 (23831694-23831833) | |
| 585-719, gnl|Hg17|chr14 (23831832-23831698) | |
| 585-719, gnl|loxAfr1|scaffold_118346 (4062-4201) | |
| 585-719, gnl|mm7|chr14 (50608532-50608671) | |
| 585-719, gnl|Mm7|chr14 (50608670-50608536) | |
| 585-719, gnl|monDom2|scaffold_12 (25420578-25420439) | |
| 585-719, gnl|oryCun1|scaffold_178102 (178590-178729) | |
| 585-719, gnl|panTro1|chr15 (22735936-22736075) | |
| 585-719, gnl|rheMac2|chr7 (87188761-87188900) | |
| 585-719, gnl|rn3|chr15 (33918463-33918602) | |
| 585-719, gnl|tetNig1|chr15 (2136520-2136659) | |
| 1018-1387, gnl|bosTau2|chr10 (12210815-12211183) | |
| 1018-1387, gnl|Hg17|chr14 (23830042-23829664) | |
| 1018-1387, gnl|Mm7|chr14 (50606774-50606396) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cov (0.528611) | |
| duo (0.345602) | |
| cga (0.279096) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| duo (0.345602) | |
| cga (0.279096) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) |