Ss1.1-Tes1-TES01A040008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCGGATTGCGTGCCTCGGTGGAAGGTAGGGGTGAGGTCAGACCGCATGTACTGGGAAG CCTACCTGGGACTTGGTGTCTTTGGAATCCCCAAGGGTTTCACACTGACATTTTGTAATT TGCACCGTCCTTGCTACTTAATGCAAAATTGTTGCATCTGTCGGGAACATATTGGAGGAA TGGGTTTCCCTAAGGGCTCTTGTGTAGCCACAGAAAGTCTTTGTTCTGGTGACCCAGCCG GACCCTTATCTTCCTCACAGAGATATTGGCTGAGTGGGGGAGTTGGCAGTGGTAGGTATC CTATGAGGCAATTGCAGAAGCTGCCCCACAAATTCGGTACTTCATGCCTTATTTGGCAAT CCTGCTGTGAGTTTAGTGGAATAAAAAGCCGAGTTGTCCAGCCCGACACTGAGAACTGTT TAGTTTCGCCCTGTGTGACTGTCGTCAGGAGACGTCAGGAGTGTGGCTCGATCAAGCCTG TGACACCAGCCGCTCGCCGCTCTCTTCAGCGAGTCTTTATTGAAGTACCTGCTCTACTTC GTCTATGTGGCTCCCGGCATAGTGAACACCTACCTCTTCATGATGCAAGCTCAAGGCATT CTGATCCGGGACAACATGAGGACAATCGGCGCTCAGGTTTACGAGCAGGTGGTTCGGAGT GCTTACGCCAAGAGGAACAGCAGCGTGAACGACTCAGACTATCCTCTTGACTTGAACCAC AGCGAAACCTTCCTACAAACCACAACTTTTCTTCCTGAAGACTTCACCTACTTTGCAAAC CACACCTGCCCCGAAAGGCTCCCTTCCATGAAGGGCCCAATAGACATAAACATGAGTGAA ATTGGAATGGATGCCATCCATGAACTCTTCTCTAAAGACCCAGCCATCAAGCTTGGAGGT CACTGGAAGCCATCGGATTGCGTGCCTCGGTGGAAGGTGGCAATCCTTATCCCCTTCCGG AACCGCCACGAGCACCTCCCGGTCCTGCTCCGACACCTGATTCCCATGCTCCAGCGCCAG CGCCTGCAGTTTGCATTTTATGTGGTGGAGCAAGTTGGCACCCAACCCTTTAATCGAGCC ATGCTTTTTAATGTGGGTTTTCAAGAAGCAATGAAGGACTTGGACTGGGACTGTCTTGTT TTTCACGATGTGGATCATATACCAGAAAACGATCGTAACTATTATGGATGTGGACAGATG CCAAGGCACTTTGCAACTAAACTGGATAAGTATATGTATCTGCTTCCTTATAATGAGTTC TTTGGCGGAGTGAGCGGCTTAACAGTGGAACAGTTTCGGAAAATCAATGGCTTTCCTAAT GCCTTCTGGGGTTGGGGTGGAGAAGATGACGACCTGTGGAACAGAGTACAGAATGCAGGC TATTCTGTGAGTCGGCCAGAAGGTGACACCGGGAAGTACAAGTCCATTCCTTATCACCAT CGAGGAGAAGTCCAGTTTCTTGGAAGGTATGCCCTGCTGAGGAAGTCCAAAGAACGGCAA GGGCTGGACGGCCTCAACAACTTGAACTACTTTGCGAACATCACATACGACGCCTTGTAT AAGAACATTACTGTCAACTTGACACCCGAGCTGGCTCAGGTGACCGAGTACTGAGACGAC GAGAGAATATGTGTTTGCTTCACCCGCCACCACCAAGAAAGCAGCCTGACGACATGTCTC GGGGCTCCACAGAGGAAGAGAACAGAAATCCAGCATCCAATGAAGGATCACAGGGTTCAA GGGAAAAATGTGAACACAGAGCACACGCACAAAACGCCTTCACCGTTTGGACCCGACCCC CCGGGTGGAGAGGGTCAGCCCGGGAACTGACTTTCTCTTTTCACCAGACAGACGTCTGTC CTGCTGCTCTTCTCCCCCTACCCCCGCCATCGCCTGCCCCGACGAACCGTCTCAGCCACA GTCTTCAGAACCAGAACTGTGATCCGCCACCGTCCCGCTGCCGGCCTCTTCCTGCGAATG GCCTTTGGAGCTTCTTGGCCCTCAGAGCAAAGAGGCAGACCCACCACTGGGCAGCTGTTT TAGGAAGAGCAAGTGAAACTCCACACGCCATTCTCCTACATCTCTGGTGTTCTCTTTGGT TTCATTTTTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCGGATTGCGTGCCTCGGTGGAAGGTAGGGGTGAGGTCAGACCGCATGTACTGGGAAG CCTACCTGGGACTTGGTGTCTTTGGAATCCCCAAGGGTTTCACACTGACATTTTGTAATT TGCACCGTCCTTGCTACTTAATGCAAAATTGTTGCATCTGTCGGGAACATATTGGAGGAA TGGGTTTCCCTAAGGGCTCTTGTGTAGCCACAGAAAGTCTTTGTTCTGGTGACCCAGCCG GACCCTTATCTTCCTCACAGAGATATTGGCTGAGTGGGGGAGTTGGCAGTGGTAGGTATC CTATGAGGCAATTGCAGAAGCTGCCCCACAAATTCGGTACTTCATGCCTTATTTGGCAAT CCTGCTGTGAGTTTAGTGGAATAAAAAGCCGAGTTGTCCAGCCCGACACTGAGAACTGTT TAGTTTCGCCCTGTGTGACTGTCGTCAGGAGACGTCAGGAGTGTGGCTCGATCAAGCCTG TGACACCAGCCGCTCGCCGCTCTCTTCAGCGAGTCTTTATTGAAGTACCTGCTCTACTTC GTCTATGTGGCTCCCGGCATAGTGAACACCTACCTCTTCATGATGCAAGCTCAAGGCATT CTGATCCGGGACAACATGAGGACAATCGGCGCTCAGGTTTACGAGCAGGTGGTTCGGAGT GCTTACGCCAAGAGGAACAGCAGCGTGAACGACTCAGACTATCCTCTTGACTTGAACCAC AGCGAAACCTTCCTACAAACCACAACTTTTCTTCCTGAAGACTTCACCTACTTTGCAAAC CACACCTGCCCCGAAAGGCTCCCTTCCATGAAGGGCCCAATAGACATAAACATGAGTGAA ATTGGAATGGATGCCATCCATGAACTCTTCTCTAAAGACCCAGCCATCAAGCTTGGAGGT CACTGGAAGCCATCGGATTGCGTGCCTCGGTGGAAGGTGGCAATCCTTATCCCCTTCCGG AACCGCCACGAGCACCTCCCGGTCCTGCTCCGACACCTGATTCCCATGCTCCAGCGCCAG CGCCTGCAGTTTGCATTTTATGTGGTGGAGCAAGTTGGCACCCAACCCTTTAATCGAGCC ATGCTTTTTAATGTGGGTTTTCAAGAAGCAATGAAGGACTTGGACTGGGACTGTCTTGTT TTTCACGATGTGGATCATATACCAGAAAACGATCGTAACTATTATGGATGTGGACAGATG CCAAGGCACTTTGCAACTAAACTGGATAAGTATATGTATCTGCTTCCTTATAATGAGTTC TTTGGCGGAGTGAGCGGCTTAACAGTGGAACAGTTTCGGAAAATCAATGGCTTTCCTAAT GCCTTCTGGGGTTGGGGTGGAGAAGATGACGACCTGTGGAACAGAGTACAGAATGCAGGC TATTCTGTGAGTCGGCCAGAAGGTGACACCGGGAAGTACAAGTCCATTCCTTATCACCAT CGAGGAGAAGTCCAGTTTCTTGGAAGGTATGCCCTGCTGAGGAAGTCCAAAGAACGGCAA GGGCTGGACGGCCTCAACAACTTGAACTACTTTGCGAACATCACATACGACGCCTTGTAT AAGAACATTACTGTCAACTTGACACCCGAGCTGGCTCAGGTGACCGAGTACTGAGACGAC GAGAGAATATGTGTTTGCTTCACCCGCCACCACCAAGAAAGCAGCCTGACGACATGTCTC GGGGCTCCACAGAGGAAGAGAACAGAAATCCAGCATCCAATGAAGGATCACAGGGTTCAA GGGAAAAATGTGAACACAGAGCACACGCACAAAACGCCTTCACCGTTTGGACCCGACCCC CCGGGTGGAGAGGGTCAGCCCGGGAACTGACTTTCTCTTTTCACCAGACAGACGTCTGTC CTGCTGCTCTTCTCCCCCTACCCCCGCCATCGCCTGCCCCGACGAACCGTCTCAGCCACA GTCTTCAGAACCAGAACTGTGATCCGCCACCGTCCCGCTGCCGGCCTCTTCCTGCGAATG GCCTTTGGAGCTTCTTGGCCCTCAGAGCAAAGAGGCAGACCCACCACTGGGCAGCTGTTT TAGGAAGAGCAAGTGAAACTCCACACGCCATTCTCCTACATCTCTGGTGTTCTCTTTGGT TTCATTTTTTAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 1-469, gnl|bosTau2|chr13 (58026917-58027391) | |
| 1-469, gnl|Hg17|chr20 (47693495-47693036) | |
| 558-697, gnl|bosTau2|chr13 (58014334-58014473) | |
| 558-697, gnl|Hg17|chr20 (47706651-47706512) | |
| 558-697, gnl|Mm7|chr2 (167053880-167053741) | |
| 812-938, gnl|bosTau2|chr13 (58026818-58026944) | |
| 812-938, gnl|canFam2|chr24 (39204484-39204676) | |
| 812-938, gnl|danRer3|chr23 (1106882-1106737) | |
| 812-938, gnl|dasNov1|scaffold_218523 (736-556) | |
| 812-938, gnl|echTel1|scaffold_270104 (10532-10707) | |
| 812-938, gnl|fr1|chrUn (58162459-58162281) | |
| 812-938, gnl|galGal2|chr20 (13491826-13491668) | |
| 812-938, gnl|hg17|chr20 (47693463-47693642) | |
| 812-938, gnl|Hg17|chr20 (47693594-47693468) | |
| 812-938, gnl|loxAfr1|scaffold_56495 (4328-4507) | |
| 812-938, gnl|mm7|chr2 (167048192-167048350) | |
| 812-938, gnl|Mm7|chr2 (167048322-167048196) | |
| 812-938, gnl|monDom2|scaffold_1 (161055527-161055694) | |
| 812-938, gnl|oryCun1|scaffold_206429 (35450-35246) | |
| 812-938, gnl|panTro1|chr21 (50392472-50392651) | |
| 812-938, gnl|rheMac2|chr10 (14824921-14824743) | |
| 812-938, gnl|rn3|chr3 (158355326-158355489) | |
| 812-938, gnl|tetNig1|chrUn_random (49505768-49505633) | |
| 812-938, gnl|xenTro1|scaffold_165 (436803-436972) | |
| 1054-1242, gnl|bosTau2|chr13 (58028844-58029032) | |
| 1054-1242, gnl|canFam2|chr24 (39202532-39202738) | |
| 1054-1242, gnl|danRer3|chr23 (1112267-1112070) | |
| 1054-1242, gnl|dasNov1|scaffold_5113 (60520-60342) | |
| 1054-1242, gnl|echTel1|scaffold_270104 (8208-8414) | |
| 1054-1242, gnl|fr1|chrUn (58163702-58163496) | |
| 1054-1242, gnl|galGal2|chr20 (13493520-13493314) | |
| 1054-1242, gnl|hg17|chr20 (47690415-47690621) | |
| 1054-1242, gnl|Hg17|chr20 (47690609-47690421) | |
| 1054-1242, gnl|loxAfr1|scaffold_185648 (471-677) | |
| 1054-1242, gnl|mm7|chr2 (167046307-167046511) | |
| 1054-1242, gnl|Mm7|chr2 (167046501-167046313) | |
| 1054-1242, gnl|monDom2|scaffold_1 (161051644-161051846) | |
| 1054-1242, gnl|oryCun1|scaffold_206429 (39344-39164) | |
| 1054-1242, gnl|panTro1|chr21 (50389407-50389613) | |
| 1054-1242, gnl|rheMac2|chr10 (14827911-14827705) | |
| 1054-1242, gnl|rn3|chr3 (158353465-158353669) | |
| 1054-1242, gnl|tetNig1|chrUn_random (49506220-49506016) | |
| 1054-1242, gnl|xenTro1|scaffold_102 (1403327-1403536) | |
| 1243-1364, gnl|bosTau2|chr6 (4122625-4122746) | |
| 1243-1364, gnl|canFam2|chr7 (60893178-60893037) | |
| 1243-1364, gnl|danRer3|chr23 (36971082-36971223) | |
| 1243-1364, gnl|dasNov1|scaffold_7702 (38747-38604) | |
| 1243-1364, gnl|echTel1|scaffold_318814 (360000-360142) | |
| 1243-1364, gnl|fr1|chrUn (223918825-223918680) | |
| 1243-1364, gnl|galGal2|chr2 (105348994-105349130) | |
| 1243-1364, gnl|hg17|chr18 (27460953-27461095) | |
| 1243-1364, gnl|Hg17|chr18 (27461081-27460902) | |
| 1243-1364, gnl|loxAfr1|scaffold_56495 (1351-1487) | |
| 1243-1364, gnl|mm7|chr18 (21059931-21060075) | |
| 1243-1364, gnl|Mm7|chr18 (21060060-21059939) | |
| 1243-1364, gnl|monDom2|scaffold_4 (124581206-124581064) | |
| 1243-1364, gnl|oryCun1|scaffold_197311 (43314-43457) | |
| 1243-1364, gnl|panTro1|chr17 (23360239-23360381) | |
| 1243-1364, gnl|rheMac2|chr18 (24546331-24546473) | |
| 1243-1364, gnl|rn3|chr18 (12452247-12452386) | |
| 1243-1364, gnl|tetNig1|chrUn_random (49506427-49506290) | |
| 1243-1364, gnl|xenTro1|scaffold_102 (1402184-1402321) | |
| 1465-1831, gnl|bosTau2|chr13 (58033938-58034307) | |
| 1465-1831, gnl|Hg17|chr20 (47686405-47686009) | |
| 1465-1831, gnl|Mm7|chr2 (167042139-167041764) | |
| 1883-2095, gnl|bosTau2|chr13 (58034325-58034532) | |
| 1883-2095, gnl|Hg17|chr20 (47685991-47685764) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-469, gnl|bosTau2|chr13 (58026917-58027391) | |
| 1-469, gnl|Hg17|chr20 (47693495-47693036) | |
| 558-697, gnl|bosTau2|chr13 (58014334-58014473) | |
| 558-697, gnl|Hg17|chr20 (47706651-47706512) | |
| 558-697, gnl|Mm7|chr2 (167053880-167053741) | |
| 812-938, gnl|bosTau2|chr13 (58026818-58026944) | |
| 812-938, gnl|canFam2|chr24 (39204484-39204676) | |
| 812-938, gnl|danRer3|chr23 (1106882-1106737) | |
| 812-938, gnl|dasNov1|scaffold_218523 (736-556) | |
| 812-938, gnl|echTel1|scaffold_270104 (10532-10707) | |
| 812-938, gnl|fr1|chrUn (58162459-58162281) | |
| 812-938, gnl|galGal2|chr20 (13491826-13491668) | |
| 812-938, gnl|hg17|chr20 (47693463-47693642) | |
| 812-938, gnl|Hg17|chr20 (47693594-47693468) | |
| 812-938, gnl|loxAfr1|scaffold_56495 (4328-4507) | |
| 812-938, gnl|mm7|chr2 (167048192-167048350) | |
| 812-938, gnl|Mm7|chr2 (167048322-167048196) | |
| 812-938, gnl|monDom2|scaffold_1 (161055527-161055694) | |
| 812-938, gnl|oryCun1|scaffold_206429 (35450-35246) | |
| 812-938, gnl|panTro1|chr21 (50392472-50392651) | |
| 812-938, gnl|rheMac2|chr10 (14824921-14824743) | |
| 812-938, gnl|rn3|chr3 (158355326-158355489) | |
| 812-938, gnl|tetNig1|chrUn_random (49505768-49505633) | |
| 812-938, gnl|xenTro1|scaffold_165 (436803-436972) | |
| 1054-1242, gnl|bosTau2|chr13 (58028844-58029032) | |
| 1054-1242, gnl|canFam2|chr24 (39202532-39202738) | |
| 1054-1242, gnl|danRer3|chr23 (1112267-1112070) | |
| 1054-1242, gnl|dasNov1|scaffold_5113 (60520-60342) | |
| 1054-1242, gnl|echTel1|scaffold_270104 (8208-8414) | |
| 1054-1242, gnl|fr1|chrUn (58163702-58163496) | |
| 1054-1242, gnl|galGal2|chr20 (13493520-13493314) | |
| 1054-1242, gnl|hg17|chr20 (47690415-47690621) | |
| 1054-1242, gnl|Hg17|chr20 (47690609-47690421) | |
| 1054-1242, gnl|loxAfr1|scaffold_185648 (471-677) | |
| 1054-1242, gnl|mm7|chr2 (167046307-167046511) | |
| 1054-1242, gnl|Mm7|chr2 (167046501-167046313) | |
| 1054-1242, gnl|monDom2|scaffold_1 (161051644-161051846) | |
| 1054-1242, gnl|oryCun1|scaffold_206429 (39344-39164) | |
| 1054-1242, gnl|panTro1|chr21 (50389407-50389613) | |
| 1054-1242, gnl|rheMac2|chr10 (14827911-14827705) | |
| 1054-1242, gnl|rn3|chr3 (158353465-158353669) | |
| 1054-1242, gnl|tetNig1|chrUn_random (49506220-49506016) | |
| 1054-1242, gnl|xenTro1|scaffold_102 (1403327-1403536) | |
| 1243-1364, gnl|bosTau2|chr6 (4122625-4122746) | |
| 1243-1364, gnl|canFam2|chr7 (60893178-60893037) | |
| 1243-1364, gnl|danRer3|chr23 (36971082-36971223) | |
| 1243-1364, gnl|dasNov1|scaffold_7702 (38747-38604) | |
| 1243-1364, gnl|echTel1|scaffold_318814 (360000-360142) | |
| 1243-1364, gnl|fr1|chrUn (223918825-223918680) | |
| 1243-1364, gnl|galGal2|chr2 (105348994-105349130) | |
| 1243-1364, gnl|hg17|chr18 (27460953-27461095) | |
| 1243-1364, gnl|Hg17|chr18 (27461081-27460902) | |
| 1243-1364, gnl|loxAfr1|scaffold_56495 (1351-1487) | |
| 1243-1364, gnl|mm7|chr18 (21059931-21060075) | |
| 1243-1364, gnl|Mm7|chr18 (21060060-21059939) | |
| 1243-1364, gnl|monDom2|scaffold_4 (124581206-124581064) | |
| 1243-1364, gnl|oryCun1|scaffold_197311 (43314-43457) | |
| 1243-1364, gnl|panTro1|chr17 (23360239-23360381) | |
| 1243-1364, gnl|rheMac2|chr18 (24546331-24546473) | |
| 1243-1364, gnl|rn3|chr18 (12452247-12452386) | |
| 1243-1364, gnl|tetNig1|chrUn_random (49506427-49506290) | |
| 1243-1364, gnl|xenTro1|scaffold_102 (1402184-1402321) | |
| 1465-1831, gnl|bosTau2|chr13 (58033938-58034307) | |
| 1465-1831, gnl|Hg17|chr20 (47686405-47686009) | |
| 1465-1831, gnl|Mm7|chr2 (167042139-167041764) | |
| 1883-2095, gnl|bosTau2|chr13 (58034325-58034532) | |
| 1883-2095, gnl|Hg17|chr20 (47685991-47685764) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| clu (0.358938) | |
| pla (0.267344) | |
| ece (0.229305) | |
| duo (0.172801) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| pla (0.267344) | |
| ece (0.229305) | |
| duo (0.172801) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) |