Ss1.1-Tes1-TES01A050004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTGTTTGGTGTCCTGGTGCGCGGTTGGTAGCCGCGAACTCGTTTTCTTCCTTTGAGAC CTGGCTTCTGCATTCCAGCGCGGATTGGTGAAGGCTCTACGGCTCCAGTAGTAGCTAGGG GCCCTGCCGGCGTTTCCTCCCAGGCTCGGCCATGCCGGCGGTGTTGGGTTTTGAAGGCAG CGCCAACAAGATTGGCGTGGGAGTGGTGCGGGATGGCACCGTGCTGGCGAACCCTCGGCG CACTTACGTCACGCCTCCGGGTACAGGATTCCTTCCAGGTGATACTGCCAGGCACCACAG AGCTGTTATCCTGGACCTGCTGCAGGAGGCACTAACAGAGGCTGGATTAACTTCACAAGA TATTGATTGCATTGCGTATACTAAAGGTCCTGGTATGGGTGCCCCATTGGTTTCTGTGGC TGTTGTGGCGCGTACTATTGCCCAGTTGTGGAATAAGCCATTGGTGGGTGTTAACCATTG CATAGGCCACATTGAGATGGGCCGCCTCATCACTGGAGCCACCAGCCCAACTGTGCTGTA TGTCAGTGGAGGAAATACACAGGTGATTGCATATTCAGAACATCGTTACCGCATCTTTGG GGAAACCATCGATATTGCTGTGGGTAATTGTCTGGATCGTTTTGCTCGAGTCCTGAAGAT TTCCAATGACCCAAGTCCAGGCTACAACATTGAACAAATGGCAAAGCGAGGCAAGAAGCT AGTTGAGCTGCCATACACTGTAAAGGGCATGGACGTCTCATTCTCGGGGATCTTGTCTTT CATTGAGGATGTAGCCCAGCGGATGCTGGCCACAGGCGAGTGTACTCCTGAGGATCTATG CTTCTCCTTGCAGGAAACTGTGTTTGCAATGCTGGTAGAGATCACAGAGCGGGCCATGGC ACATTGCGGTTCCCAGGAGGCCCTCATCGTAGGAGGAGTGGGTTGTAATATTAGGTTACA GGAAATGATGGAAACAATGTGCCAGGAACGCGGAGCCCGGCTTTTTGCCACAGATGAGAG ATTCTGCATTGACAATGGAGCCATGATAGCCCAGGCTGGCTGGGAGATGTTTCAGGCTGG ACATAGGACCCCCCTCAGTGAATCTGGGGTCACACAGAGGTATCGGACAGATGAAGTAGA AGTGACCTGGAGGGACTGACAAGGTGAACAGGATCAAGTAGATAGCGCCCTAAGTGGAGC CCCAGGGACCCTGGGCCTTAACCTCATCCTGACATAAGACCCTAGCAAGACTGTGGACGC CCCTCTCCCATCATTTGAACCTCAAGATGACTCTATAATAAAAATATTTTTGGGTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTGTTTGGTGTCCTGGTGCGCGGTTGGTAGCCGCGAACTCGTTTTCTTCCTTTGAGAC CTGGCTTCTGCATTCCAGCGCGGATTGGTGAAGGCTCTACGGCTCCAGTAGTAGCTAGGG GCCCTGCCGGCGTTTCCTCCCAGGCTCGGCCATGCCGGCGGTGTTGGGTTTTGAAGGCAG CGCCAACAAGATTGGCGTGGGAGTGGTGCGGGATGGCACCGTGCTGGCGAACCCTCGGCG CACTTACGTCACGCCTCCGGGTACAGGATTCCTTCCAGGTGATACTGCCAGGCACCACAG AGCTGTTATCCTGGACCTGCTGCAGGAGGCACTAACAGAGGCTGGATTAACTTCACAAGA TATTGATTGCATTGCGTATACTAAAGGTCCTGGTATGGGTGCCCCATTGGTTTCTGTGGC TGTTGTGGCGCGTACTATTGCCCAGTTGTGGAATAAGCCATTGGTGGGTGTTAACCATTG CATAGGCCACATTGAGATGGGCCGCCTCATCACTGGAGCCACCAGCCCAACTGTGCTGTA TGTCAGTGGAGGAAATACACAGGTGATTGCATATTCAGAACATCGTTACCGCATCTTTGG GGAAACCATCGATATTGCTGTGGGTAATTGTCTGGATCGTTTTGCTCGAGTCCTGAAGAT TTCCAATGACCCAAGTCCAGGCTACAACATTGAACAAATGGCAAAGCGAGGCAAGAAGCT AGTTGAGCTGCCATACACTGTAAAGGGCATGGACGTCTCATTCTCGGGGATCTTGTCTTT CATTGAGGATGTAGCCCAGCGGATGCTGGCCACAGGCGAGTGTACTCCTGAGGATCTATG CTTCTCCTTGCAGGAAACTGTGTTTGCAATGCTGGTAGAGATCACAGAGCGGGCCATGGC ACATTGCGGTTCCCAGGAGGCCCTCATCGTAGGAGGAGTGGGTTGTAATATTAGGTTACA GGAAATGATGGAAACAATGTGCCAGGAACGCGGAGCCCGGCTTTTTGCCACAGATGAGAG ATTCTGCATTGACAATGGAGCCATGATAGCCCAGGCTGGCTGGGAGATGTTTCAGGCTGG ACATAGGACCCCCCTCAGTGAATCTGGGGTCACACAGAGGTATCGGACAGATGAAGTAGA AGTGACCTGGAGGGACTGACAAGGTGAACAGGATCAAGTAGATAGCGCCCTAAGTGGAGC CCCAGGGACCCTGGGCCTTAACCTCATCCTGACATAAGACCCTAGCAAGACTGTGGACGC CCCTCTCCCATCATTTGAACCTCAAGATGACTCTATAATAAAAATATTTTTGGGTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 149-267, + strand, RNAz p=0.524895 | |
| 409-528, + strand, RNAz p=0.992875 | |
| 434-548, - strand, RNAz p=0.528822 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 149-267, + strand, RNAz p=0.524895 | |
| 409-528, + strand, RNAz p=0.992875 | |
| 434-548, - strand, RNAz p=0.528822 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017807, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 149-267, gnl|bosTau2|chr10 (16377571-16377689) | |
| 149-267, gnl|canFam2|chr15 (20791182-20791266) | |
| 149-267, gnl|danRer3|chr4 (3183996-3184080) | |
| 149-267, gnl|dasNov1|scaffold_68163 (6908-7001) | |
| 149-267, gnl|echTel1|scaffold_285126 (44433-44340) | |
| 149-267, gnl|fr1|chrUn (161200325-161200239) | |
| 149-267, gnl|hg17|chr14 (19992558-19992651) | |
| 149-267, gnl|Hg17|chr14 (19992685-19992567) | |
| 149-267, gnl|loxAfr1|scaffold_3372 (100454-100361) | |
| 149-267, gnl|mm7|chr14 (46258551-46258644) | |
| 149-267, gnl|Mm7|chr14 (46258678-46258560) | |
| 149-267, gnl|monDom2|scaffold_12 (30393589-30393496) | |
| 149-267, gnl|oryCun1|scaffold_209961 (25455-25544) | |
| 149-267, gnl|panTro1|chrUn_random (21329675-21329768) | |
| 149-267, gnl|rheMac2|chr7 (83159323-83159416) | |
| 149-267, gnl|rn3|chr15 (26919498-26919591) | |
| 149-267, gnl|tetNig1|chrUn_random (25395635-25395552) | |
| 149-267, gnl|xenTro1|scaffold_339 (1199727-1199812) | |
| 370-564, gnl|bosTau2|chr10 (16379370-16379563) | |
| 370-564, gnl|canFam2|chr15 (20788976-20789199) | |
| 370-564, gnl|danRer3|chr4 (3183201-3183452) | |
| 370-564, gnl|dasNov1|scaffold_68163 (4900-5123) | |
| 370-564, gnl|fr1|chrUn (161201023-161200818) | |
| 370-564, gnl|hg17|chr14 (19989956-19990179) | |
| 370-564, gnl|Hg17|chr14 (19990165-19989971) | |
| 370-564, gnl|loxAfr1|scaffold_3372 (102454-102231) | |
| 370-564, gnl|mm7|chr14 (46253495-46253718) | |
| 370-564, gnl|Mm7|chr14 (46253704-46253511) | |
| 370-564, gnl|monDom2|scaffold_12 (30394938-30394741) | |
| 370-564, gnl|oryCun1|scaffold_209961 (23239-23461) | |
| 370-564, gnl|panTro1|chrUn_random (21327078-21327301) | |
| 370-564, gnl|rheMac2|chr7 (83156470-83156693) | |
| 370-564, gnl|rn3|chr15 (26915855-26916078) | |
| 370-564, gnl|tetNig1|chrUn_random (25396092-25395880) | |
| 370-564, gnl|xenTro1|scaffold_339 (1197792-1197995) | |
| 1118-1313, gnl|bosTau2|chr10 (16383802-16383987) | |
| 1118-1313, gnl|Hg17|chr14 (19985280-19985063) | |
| 1118-1313, gnl|Mm7|chr14 (46249797-46249595) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-267, gnl|bosTau2|chr10 (16377571-16377689) | |
| 149-267, gnl|canFam2|chr15 (20791182-20791266) | |
| 149-267, gnl|danRer3|chr4 (3183996-3184080) | |
| 149-267, gnl|dasNov1|scaffold_68163 (6908-7001) | |
| 149-267, gnl|echTel1|scaffold_285126 (44433-44340) | |
| 149-267, gnl|fr1|chrUn (161200325-161200239) | |
| 149-267, gnl|hg17|chr14 (19992558-19992651) | |
| 149-267, gnl|Hg17|chr14 (19992685-19992567) | |
| 149-267, gnl|loxAfr1|scaffold_3372 (100454-100361) | |
| 149-267, gnl|mm7|chr14 (46258551-46258644) | |
| 149-267, gnl|Mm7|chr14 (46258678-46258560) | |
| 149-267, gnl|monDom2|scaffold_12 (30393589-30393496) | |
| 149-267, gnl|oryCun1|scaffold_209961 (25455-25544) | |
| 149-267, gnl|panTro1|chrUn_random (21329675-21329768) | |
| 149-267, gnl|rheMac2|chr7 (83159323-83159416) | |
| 149-267, gnl|rn3|chr15 (26919498-26919591) | |
| 149-267, gnl|tetNig1|chrUn_random (25395635-25395552) | |
| 149-267, gnl|xenTro1|scaffold_339 (1199727-1199812) | |
| 370-564, gnl|bosTau2|chr10 (16379370-16379563) | |
| 370-564, gnl|canFam2|chr15 (20788976-20789199) | |
| 370-564, gnl|danRer3|chr4 (3183201-3183452) | |
| 370-564, gnl|dasNov1|scaffold_68163 (4900-5123) | |
| 370-564, gnl|fr1|chrUn (161201023-161200818) | |
| 370-564, gnl|hg17|chr14 (19989956-19990179) | |
| 370-564, gnl|Hg17|chr14 (19990165-19989971) | |
| 370-564, gnl|loxAfr1|scaffold_3372 (102454-102231) | |
| 370-564, gnl|mm7|chr14 (46253495-46253718) | |
| 370-564, gnl|Mm7|chr14 (46253704-46253511) | |
| 370-564, gnl|monDom2|scaffold_12 (30394938-30394741) | |
| 370-564, gnl|oryCun1|scaffold_209961 (23239-23461) | |
| 370-564, gnl|panTro1|chrUn_random (21327078-21327301) | |
| 370-564, gnl|rheMac2|chr7 (83156470-83156693) | |
| 370-564, gnl|rn3|chr15 (26915855-26916078) | |
| 370-564, gnl|tetNig1|chrUn_random (25396092-25395880) | |
| 370-564, gnl|xenTro1|scaffold_339 (1197792-1197995) | |
| 1118-1313, gnl|bosTau2|chr10 (16383802-16383987) | |
| 1118-1313, gnl|Hg17|chr14 (19985280-19985063) | |
| 1118-1313, gnl|Mm7|chr14 (46249797-46249595) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fce (0.271592) | |
| ste (0.270416) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| che (0.136314) | |
| pla (0.133672) | |
| ebs (0.118301) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ste (0.270416) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| pty (0.142714) | |
| che (0.136314) | |
| pla (0.133672) | |
| ebs (0.118301) |