Ss1.1-Tes1-TES01A050005.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGCACCATCAGGTGTACTCCCGGCTGCCGCTGACCGATGAGGTGTCGTTTACGTCCC GGCTGCCCGGGTGGGCTTGAGCCTCTGGCTCCCAGGTGACGGTCGGAGGAGGCCGCAGGC TCAGGACCTGCTTGTTCCCGCGGCGTACACGGCGGGCTGACCTTGGCTGCTGCTCTCGCC GACCTTGGCCGAGGGTCGGAGCCAATGGCGGCCTGGGCTGTTGTCAACCTGAGCAGGGCT GCTGCCCGATGCTTGCGGGCTCGAGACCCTGGGGTCCGGGAGGCTCTTTTGCGCGCCTCC CAGTCTGAGCCTCCAGATTGGAGCTTCGCCTGGGGCCGAATGCTGCACGTCACTGCGGCG GTTCCTGCCGGGCACAACAAGTGGTCCAAAGTCCGGCACATCAAGGGTCCCAAGGACACC GAAAGGAGTCGCATCTTCTCCAAGCTCAGTCTGAGCATTCGCCTAGCGGTTAAAGAAGGA GGCCCCAACCCTGATCTCAACAGCAACCTGGCCAGCATCTTAGAGGTGTGTCGCAGCAAG CACATGCCCAAGTCAACAATGGAAGCAGCACTGAAAATGGAGAAAACCAAGGACATTCAT TTGTTGTATGAGGGCCGAGGCCCTGGTGGCTCTTCTCTTCTCATTGAGGCATTATCTAAC AGTGGCTCCAAGTGCCTCTCGGACATCAAACATATCCTGAACAAGAATGGGGGAATGATG GCTGAAGGAGCTCGCCACTTCTTTGACAAAAAGGGAGTGATAGTGGTTGGAGTGGAGGAC AGAGAGAAGAAAGCTGTGAACCTAGAGCGTGCCCTGGAGCTGGCAATTGAAGCAGGGGCT GAGGATGTCAAGGAAACTGAAGACGAAGAGGAAAAGAACATTTTTAAATTTGTTTGTGAT GCCTCTTCACTGCACCAAGTGAGGAAGAAGCTGGACTCCCTGGGCCTGTGTTGTGTGTCC TGTATGCTAGAGTTCATCCCCAACACAAAGGTGCAGCTGGCTGACCCCGAGCTGGAGCAG GCTGCCCATCTCATCCAGGCCCTCAGCAACCACGACGACGTGATCCACGTCTATGACAAC ATTGAGTAGCCAGGCCGTACCTGCTGCCAGGCAGCCTCTTCTGGAGCACAAGCCTCTGAG ACTCAAGCAGACGGGGGAGTCTAGCAGGTCAGGAAGCATGAGACCTGCAACTTTGTGGCC AAGGGAATGCCCGCGCTTTGTGAGGCCTCCGTGTCAGCATGGCTGGTGTCTAGAGTCCTC TTGGATGAGTTCCCTCCAACATCCTTCTGGATGCAAGGTGCAGCCAGTTAGCTGGTCAGA CTCTGATCTCAGGAATGTGGCCCTCGTGGGGATGGTCGGTGCCCCATGTGCTGGAAACTG CTGTGAAATAATAACAGTGATTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGCACCATCAGGTGTACTCCCGGCTGCCGCTGACCGATGAGGTGTCGTTTACGTCCC GGCTGCCCGGGTGGGCTTGAGCCTCTGGCTCCCAGGTGACGGTCGGAGGAGGCCGCAGGC TCAGGACCTGCTTGTTCCCGCGGCGTACACGGCGGGCTGACCTTGGCTGCTGCTCTCGCC GACCTTGGCCGAGGGTCGGAGCCAATGGCGGCCTGGGCTGTTGTCAACCTGAGCAGGGCT GCTGCCCGATGCTTGCGGGCTCGAGACCCTGGGGTCCGGGAGGCTCTTTTGCGCGCCTCC CAGTCTGAGCCTCCAGATTGGAGCTTCGCCTGGGGCCGAATGCTGCACGTCACTGCGGCG GTTCCTGCCGGGCACAACAAGTGGTCCAAAGTCCGGCACATCAAGGGTCCCAAGGACACC GAAAGGAGTCGCATCTTCTCCAAGCTCAGTCTGAGCATTCGCCTAGCGGTTAAAGAAGGA GGCCCCAACCCTGATCTCAACAGCAACCTGGCCAGCATCTTAGAGGTGTGTCGCAGCAAG CACATGCCCAAGTCAACAATGGAAGCAGCACTGAAAATGGAGAAAACCAAGGACATTCAT TTGTTGTATGAGGGCCGAGGCCCTGGTGGCTCTTCTCTTCTCATTGAGGCATTATCTAAC AGTGGCTCCAAGTGCCTCTCGGACATCAAACATATCCTGAACAAGAATGGGGGAATGATG GCTGAAGGAGCTCGCCACTTCTTTGACAAAAAGGGAGTGATAGTGGTTGGAGTGGAGGAC AGAGAGAAGAAAGCTGTGAACCTAGAGCGTGCCCTGGAGCTGGCAATTGAAGCAGGGGCT GAGGATGTCAAGGAAACTGAAGACGAAGAGGAAAAGAACATTTTTAAATTTGTTTGTGAT GCCTCTTCACTGCACCAAGTGAGGAAGAAGCTGGACTCCCTGGGCCTGTGTTGTGTGTCC TGTATGCTAGAGTTCATCCCCAACACAAAGGTGCAGCTGGCTGACCCCGAGCTGGAGCAG GCTGCCCATCTCATCCAGGCCCTCAGCAACCACGACGACGTGATCCACGTCTATGACAAC ATTGAGTAGCCAGGCCGTACCTGCTGCCAGGCAGCCTCTTCTGGAGCACAAGCCTCTGAG ACTCAAGCAGACGGGGGAGTCTAGCAGGTCAGGAAGCATGAGACCTGCAACTTTGTGGCC AAGGGAATGCCCGCGCTTTGTGAGGCCTCCGTGTCAGCATGGCTGGTGTCTAGAGTCCTC TTGGATGAGTTCCCTCCAACATCCTTCTGGATGCAAGGTGCAGCCAGTTAGCTGGTCAGA CTCTGATCTCAGGAATGTGGCCCTCGTGGGGATGGTCGGTGCCCCATGTGCTGGAAACTG CTGTGAAATAATAACAGTGATTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 178-1350, - strand, RNAz p=0.954803 | |
| 710-828, + strand, RNAz p=0.681019 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 178-1350, - strand, RNAz p=0.954803 | |
| 710-828, + strand, RNAz p=0.681019 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK094052, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 178-475, gnl|bosTau2|chr19 (40326274-40326580) | |
| 178-475, gnl|Hg17|chr17 (59032125-59032454) | |
| 178-475, gnl|Mm7|chr11 (106175239-106175559) | |
| 710-888, gnl|bosTau2|chr19 (40329410-40329588) | |
| 710-888, gnl|canFam2|chr9 (14728005-14728216) | |
| 710-888, gnl|dasNov1|scaffold_154851 (1076-1287) | |
| 710-888, gnl|fr1|chrUn (180315887-180315694) | |
| 710-888, gnl|hg17|chr17 (59038360-59038572) | |
| 710-888, gnl|Hg17|chr17 (59038378-59038556) | |
| 710-888, gnl|loxAfr1|scaffold_2991 (23687-23476) | |
| 710-888, gnl|mm7|chr11 (106181553-106181820) | |
| 710-888, gnl|Mm7|chr11 (106181571-106181749) | |
| 710-888, gnl|monDom2|scaffold_18 (35956407-35956198) | |
| 710-888, gnl|oryCun1|scaffold_169931 (8414-8203) | |
| 710-888, gnl|panTro1|chr19 (46099655-46099443) | |
| 710-888, gnl|rheMac2|chr16 (59121980-59122192) | |
| 710-888, gnl|tetNig1|chr2 (5551982-5551786) | |
| 710-888, gnl|xenTro1|scaffold_221 (1622060-1621855) | |
| 889-1138, gnl|bosTau2|chr19 (40329923-40330172) | |
| 889-1138, gnl|Hg17|chr17 (59038894-59039162) | |
| 889-1138, gnl|Mm7|chr11 (106182142-106182395) | |
| 1161-1402, gnl|bosTau2|chr19 (40330228-40330472) | |
| 1161-1402, gnl|canFam2|chr9 (14729027-14728813) | |
| 1161-1402, gnl|dasNov1|scaffold_234416 (4033-4250) | |
| 1161-1402, gnl|Hg17|chr17 (59039196-59039444) | |
| 1161-1402, gnl|hg17|chr19 (62309228-62309460) | |
| 1161-1402, gnl|rheMac2|chr16 (59123035-59122803) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-475, gnl|bosTau2|chr19 (40326274-40326580) | |
| 178-475, gnl|Hg17|chr17 (59032125-59032454) | |
| 178-475, gnl|Mm7|chr11 (106175239-106175559) | |
| 710-888, gnl|bosTau2|chr19 (40329410-40329588) | |
| 710-888, gnl|canFam2|chr9 (14728005-14728216) | |
| 710-888, gnl|dasNov1|scaffold_154851 (1076-1287) | |
| 710-888, gnl|fr1|chrUn (180315887-180315694) | |
| 710-888, gnl|hg17|chr17 (59038360-59038572) | |
| 710-888, gnl|Hg17|chr17 (59038378-59038556) | |
| 710-888, gnl|loxAfr1|scaffold_2991 (23687-23476) | |
| 710-888, gnl|mm7|chr11 (106181553-106181820) | |
| 710-888, gnl|Mm7|chr11 (106181571-106181749) | |
| 710-888, gnl|monDom2|scaffold_18 (35956407-35956198) | |
| 710-888, gnl|oryCun1|scaffold_169931 (8414-8203) | |
| 710-888, gnl|panTro1|chr19 (46099655-46099443) | |
| 710-888, gnl|rheMac2|chr16 (59121980-59122192) | |
| 710-888, gnl|tetNig1|chr2 (5551982-5551786) | |
| 710-888, gnl|xenTro1|scaffold_221 (1622060-1621855) | |
| 889-1138, gnl|bosTau2|chr19 (40329923-40330172) | |
| 889-1138, gnl|Hg17|chr17 (59038894-59039162) | |
| 889-1138, gnl|Mm7|chr11 (106182142-106182395) | |
| 1161-1402, gnl|bosTau2|chr19 (40330228-40330472) | |
| 1161-1402, gnl|canFam2|chr9 (14729027-14728813) | |
| 1161-1402, gnl|dasNov1|scaffold_234416 (4033-4250) | |
| 1161-1402, gnl|Hg17|chr17 (59039196-59039444) | |
| 1161-1402, gnl|hg17|chr19 (62309228-62309460) | |
| 1161-1402, gnl|rheMac2|chr16 (59123035-59122803) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cov (0.264306) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eru (0.120048) |