Ss1.1-Tes1-TES01A050007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCAGGACTAGGGTGATGACCATGCTAATAACCGGGTGGGATTTCGCAGGCGGCCATCT TGCCTGGAGCCTGGGAGAGAGAGGGAGAGAGAGGAGAGAAGGGTGACACTGGTCTCAGGG CCGCCCCGGGAGCCTCAAGAGCCGGAGGCAGCCCCGGAGGCTCCCGCGGGCGGACACGCC GGAAGAGGAGGCCGGGGAATGGCCGCGGTGTGGCAGCAGGTTTTAGCAGTAGATGCGAGA TACAACGCATACCGCACACCAACGTTTCCACAGTTTCGGACGCAGTATATCCGGCGGCGC AGCCAGCTACTGCGGGAGAATGCCAAGGCTGGGCACCCTCCAGCATTGCGTCGGCAGTAC CTGAGGCTGCGTGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGT GCTCGTGCCTATAGCAACAGCATCGTCCGCAGCAGCCGCACTACCCTTGACCGCATGGAG GACTTCGAGGATGATCCTCGGGCTCTGGGGGCCCGTGGGCACCGCCGTTCTGTCAGCCGC GGCTCCTACCAGCTGCAAGCACAGATGAACCGTGCTGTCTATGAGGACAGGCCCCCCGGC AGCGTGGTGCCCACGTCAGCGGCAGAAGCAAGTCGAGCCATGGCCGGGGACACATCGCTG AGCGAGAACTATGCCTTTGCGGGCATGTACCATGTTTTTGACCAACACGTGGATGAGGCA GTCCCACGGGTGCGCTTCGCCAACGACGACCGGCACCGCCTGGCCTGCTGCTCGCTCGAT GGCAGCATCTCGCTGTGCCAGCTGGTGCCCGCCCCGCCCACCGTGCTCCGCGTGCTGCGG GGCCACACGCGGGGTGTCTCCGACTTCGCCTGGTCCCTCTCCAATGACATCCTCGTGTCC ACCTCTCTCGATGCCACCATGCGCATCTGGGCCTCTGAGGATGGCCGCTGCATCCGGGAG ATCCCTGACCCCGACGGGGCCGAACTGCTCTGCTGCACCTTCCAGCCCGTCAACAACAAC CTCACTGTGGTGGGGAACGCCAAGCACAACGTGCACGTCATGAACATCTCCACGGGCAAG AAGGTGAAGGGCGGCTCCAGCAAGCTGACAGGCCGCGTCCTCGCTCTGTCCTTTGACGCC CCCGGCCGGCTCCTCTGGGCGGGCGATGATCGTGGCAGCATTTTCTCCTTCCTCTTCGAC ATGGCCACAGGGAAGCTGACCAAAGCCAAGCGTCTGGTGGTGCACGAGGGCAGCCCCGTG ACCAGCATCTCCGCCCGCTCCTGGGTCAGCCGCGAGGCCCGGGACCCCTCCCTGCTCATC AATGCTTGCCTCAACAAGCTGCTGCTCTACAGGGTGGTGGACAATGAGGGGACCCTGCAG CTGAAGAGGAGCTTCCCCATTGAGCAGAGCTCGCACCCCGTACGCAGCATCTTCTGCCCT CTCATGTCCTTCCGCCAAGGGGCCTGTGTGGTGACAGGCAGCGAGGACATGTGCGTGCAT TTCTTTGACGTGGAGCGAGCAGCCAAGGCCGCCGTCAACAAGCTGCAGGGCCACAGCGCG CCCGTGCTGGACGTCAGCTTCAACTGCGACGAGAGCCTGCTGGCCTCCAGTGACGCCAGC GGCATGGTCATCGTCTGGAGGCGGGAGCAGAAGTAGGAGATGTCAGCCCTGCCACTGTCC CACCTTCCCACCGGCCTTCTGCCCCAGTTGTGTTTGTAAATAAAGTACCCGTGGTCGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCAGGACTAGGGTGATGACCATGCTAATAACCGGGTGGGATTTCGCAGGCGGCCATCT TGCCTGGAGCCTGGGAGAGAGAGGGAGAGAGAGGAGAGAAGGGTGACACTGGTCTCAGGG CCGCCCCGGGAGCCTCAAGAGCCGGAGGCAGCCCCGGAGGCTCCCGCGGGCGGACACGCC GGAAGAGGAGGCCGGGGAATGGCCGCGGTGTGGCAGCAGGTTTTAGCAGTAGATGCGAGA TACAACGCATACCGCACACCAACGTTTCCACAGTTTCGGACGCAGTATATCCGGCGGCGC AGCCAGCTACTGCGGGAGAATGCCAAGGCTGGGCACCCTCCAGCATTGCGTCGGCAGTAC CTGAGGCTGCGTGGGCAGCTGCTGGGCCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGT GCTCGTGCCTATAGCAACAGCATCGTCCGCAGCAGCCGCACTACCCTTGACCGCATGGAG GACTTCGAGGATGATCCTCGGGCTCTGGGGGCCCGTGGGCACCGCCGTTCTGTCAGCCGC GGCTCCTACCAGCTGCAAGCACAGATGAACCGTGCTGTCTATGAGGACAGGCCCCCCGGC AGCGTGGTGCCCACGTCAGCGGCAGAAGCAAGTCGAGCCATGGCCGGGGACACATCGCTG AGCGAGAACTATGCCTTTGCGGGCATGTACCATGTTTTTGACCAACACGTGGATGAGGCA GTCCCACGGGTGCGCTTCGCCAACGACGACCGGCACCGCCTGGCCTGCTGCTCGCTCGAT GGCAGCATCTCGCTGTGCCAGCTGGTGCCCGCCCCGCCCACCGTGCTCCGCGTGCTGCGG GGCCACACGCGGGGTGTCTCCGACTTCGCCTGGTCCCTCTCCAATGACATCCTCGTGTCC ACCTCTCTCGATGCCACCATGCGCATCTGGGCCTCTGAGGATGGCCGCTGCATCCGGGAG ATCCCTGACCCCGACGGGGCCGAACTGCTCTGCTGCACCTTCCAGCCCGTCAACAACAAC CTCACTGTGGTGGGGAACGCCAAGCACAACGTGCACGTCATGAACATCTCCACGGGCAAG AAGGTGAAGGGCGGCTCCAGCAAGCTGACAGGCCGCGTCCTCGCTCTGTCCTTTGACGCC CCCGGCCGGCTCCTCTGGGCGGGCGATGATCGTGGCAGCATTTTCTCCTTCCTCTTCGAC ATGGCCACAGGGAAGCTGACCAAAGCCAAGCGTCTGGTGGTGCACGAGGGCAGCCCCGTG ACCAGCATCTCCGCCCGCTCCTGGGTCAGCCGCGAGGCCCGGGACCCCTCCCTGCTCATC AATGCTTGCCTCAACAAGCTGCTGCTCTACAGGGTGGTGGACAATGAGGGGACCCTGCAG CTGAAGAGGAGCTTCCCCATTGAGCAGAGCTCGCACCCCGTACGCAGCATCTTCTGCCCT CTCATGTCCTTCCGCCAAGGGGCCTGTGTGGTGACAGGCAGCGAGGACATGTGCGTGCAT TTCTTTGACGTGGAGCGAGCAGCCAAGGCCGCCGTCAACAAGCTGCAGGGCCACAGCGCG CCCGTGCTGGACGTCAGCTTCAACTGCGACGAGAGCCTGCTGGCCTCCAGTGACGCCAGC GGCATGGTCATCGTCTGGAGGCGGGAGCAGAAGTAGGAGATGTCAGCCCTGCCACTGTCC CACCTTCCCACCGGCCTTCTGCCCCAGTTGTGTTTGTAAATAAAGTACCCGTGGTCGTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1583-1701, - strand, RNAz p=0.620217 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1583-1701, - strand, RNAz p=0.620217 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 47-160, gnl|bosTau2|chrX (25807929-25808039) | |
| 47-160, gnl|canFam2|chrX (41769039-41769378) | |
| 47-160, gnl|echTel1|scaffold_278663 (1218-900) | |
| 47-160, gnl|hg17|chrX (48211985-48212319) | |
| 47-160, gnl|Hg17|chrX (48212144-48212257) | |
| 47-160, gnl|loxAfr1|scaffold_16924 (22481-22817) | |
| 47-160, gnl|mm7|chrX (6566136-6565797) | |
| 47-160, gnl|Mm7|chrX (6565974-6565855) | |
| 47-160, gnl|oryCun1|scaffold_144590 (7943-7608) | |
| 47-160, gnl|rheMac2|chrX (46447606-46447940) | |
| 47-160, gnl|rn3|chrX (26446505-26446839) | |
| 238-481, gnl|bosTau2|chrX (25809121-25809364) | |
| 238-481, gnl|canFam2|chrX (41770428-41770588) | |
| 238-481, gnl|danRer3|chr8 (1333761-1333921) | |
| 238-481, gnl|fr1|chrUn (262830159-262829999) | |
| 238-481, gnl|galGal2|chrUn (89320751-89320916) | |
| 238-481, gnl|hg17|chrX (48213357-48213517) | |
| 238-481, gnl|Hg17|chrX (48213357-48213600) | |
| 238-481, gnl|loxAfr1|scaffold_16924 (23890-24050) | |
| 238-481, gnl|mm7|chrX (6564779-6564619) | |
| 238-481, gnl|Mm7|chrX (6564777-6564534) | |
| 238-481, gnl|monDom2|scaffold_134 (410448-410288) | |
| 238-481, gnl|oryCun1|scaffold_144590 (6654-6496) | |
| 238-481, gnl|panTro1|chrX (49531262-49531422) | |
| 238-481, gnl|rheMac2|chrX (46448968-46449128) | |
| 238-481, gnl|rn3|chrX (26447872-26448032) | |
| 238-481, gnl|tetNig1|chr9 (8956181-8956012) | |
| 238-481, gnl|xenTro1|scaffold_11229 (7666-7506) | |
| 718-1031, gnl|bosTau2|chrX (25811055-25811368) | |
| 718-1031, gnl|canFam2|chrX (41772153-41772478) | |
| 718-1031, gnl|danRer3|chr8 (1339172-1339497) | |
| 718-1031, gnl|dasNov1|scaffold_201018 (3704-3378) | |
| 718-1031, gnl|fr1|chrUn (262829059-262828741) | |
| 718-1031, gnl|galGal2|chrUn (63864509-63864178) | |
| 718-1031, gnl|hg17|chrX (48214956-48215281) | |
| 718-1031, gnl|Hg17|chrX (48214957-48215270) | |
| 718-1031, gnl|loxAfr1|scaffold_169794 (369-695) | |
| 718-1031, gnl|mm7|chrX (6562433-6562108) | |
| 718-1031, gnl|Mm7|chrX (6562430-6562117) | |
| 718-1031, gnl|monDom2|scaffold_134 (409314-408992) | |
| 718-1031, gnl|oryCun1|scaffold_144590 (4482-4157) | |
| 718-1031, gnl|panTro1|chrX (49532868-49533193) | |
| 718-1031, gnl|rheMac2|chrX (46450572-46450897) | |
| 718-1031, gnl|rn3|chrX (26449910-26450235) | |
| 718-1031, gnl|tetNig1|chr9 (8955126-8954804) | |
| 718-1031, gnl|xenTro1|scaffold_11229 (6912-6590) | |
| 1184-1353, gnl|bosTau2|chrX (25812541-25812711) | |
| 1184-1353, gnl|Hg17|chrX (48216679-48216849) | |
| 1184-1353, gnl|Mm7|chrX (6561116-6560960) | |
| 1464-1740, gnl|bosTau2|chrX (25814607-25814882) | |
| 1464-1740, gnl|Hg17|chrX (48219482-48219757) | |
| 1464-1740, gnl|Mm7|chrX (6558887-6558613) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-160, gnl|bosTau2|chrX (25807929-25808039) | |
| 47-160, gnl|canFam2|chrX (41769039-41769378) | |
| 47-160, gnl|echTel1|scaffold_278663 (1218-900) | |
| 47-160, gnl|hg17|chrX (48211985-48212319) | |
| 47-160, gnl|Hg17|chrX (48212144-48212257) | |
| 47-160, gnl|loxAfr1|scaffold_16924 (22481-22817) | |
| 47-160, gnl|mm7|chrX (6566136-6565797) | |
| 47-160, gnl|Mm7|chrX (6565974-6565855) | |
| 47-160, gnl|oryCun1|scaffold_144590 (7943-7608) | |
| 47-160, gnl|rheMac2|chrX (46447606-46447940) | |
| 47-160, gnl|rn3|chrX (26446505-26446839) | |
| 238-481, gnl|bosTau2|chrX (25809121-25809364) | |
| 238-481, gnl|canFam2|chrX (41770428-41770588) | |
| 238-481, gnl|danRer3|chr8 (1333761-1333921) | |
| 238-481, gnl|fr1|chrUn (262830159-262829999) | |
| 238-481, gnl|galGal2|chrUn (89320751-89320916) | |
| 238-481, gnl|hg17|chrX (48213357-48213517) | |
| 238-481, gnl|Hg17|chrX (48213357-48213600) | |
| 238-481, gnl|loxAfr1|scaffold_16924 (23890-24050) | |
| 238-481, gnl|mm7|chrX (6564779-6564619) | |
| 238-481, gnl|Mm7|chrX (6564777-6564534) | |
| 238-481, gnl|monDom2|scaffold_134 (410448-410288) | |
| 238-481, gnl|oryCun1|scaffold_144590 (6654-6496) | |
| 238-481, gnl|panTro1|chrX (49531262-49531422) | |
| 238-481, gnl|rheMac2|chrX (46448968-46449128) | |
| 238-481, gnl|rn3|chrX (26447872-26448032) | |
| 238-481, gnl|tetNig1|chr9 (8956181-8956012) | |
| 238-481, gnl|xenTro1|scaffold_11229 (7666-7506) | |
| 718-1031, gnl|bosTau2|chrX (25811055-25811368) | |
| 718-1031, gnl|canFam2|chrX (41772153-41772478) | |
| 718-1031, gnl|danRer3|chr8 (1339172-1339497) | |
| 718-1031, gnl|dasNov1|scaffold_201018 (3704-3378) | |
| 718-1031, gnl|fr1|chrUn (262829059-262828741) | |
| 718-1031, gnl|galGal2|chrUn (63864509-63864178) | |
| 718-1031, gnl|hg17|chrX (48214956-48215281) | |
| 718-1031, gnl|Hg17|chrX (48214957-48215270) | |
| 718-1031, gnl|loxAfr1|scaffold_169794 (369-695) | |
| 718-1031, gnl|mm7|chrX (6562433-6562108) | |
| 718-1031, gnl|Mm7|chrX (6562430-6562117) | |
| 718-1031, gnl|monDom2|scaffold_134 (409314-408992) | |
| 718-1031, gnl|oryCun1|scaffold_144590 (4482-4157) | |
| 718-1031, gnl|panTro1|chrX (49532868-49533193) | |
| 718-1031, gnl|rheMac2|chrX (46450572-46450897) | |
| 718-1031, gnl|rn3|chrX (26449910-26450235) | |
| 718-1031, gnl|tetNig1|chr9 (8955126-8954804) | |
| 718-1031, gnl|xenTro1|scaffold_11229 (6912-6590) | |
| 1184-1353, gnl|bosTau2|chrX (25812541-25812711) | |
| 1184-1353, gnl|Hg17|chrX (48216679-48216849) | |
| 1184-1353, gnl|Mm7|chrX (6561116-6560960) | |
| 1464-1740, gnl|bosTau2|chrX (25814607-25814882) | |
| 1464-1740, gnl|Hg17|chrX (48219482-48219757) | |
| 1464-1740, gnl|Mm7|chrX (6558887-6558613) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |