Non-Coding RNA Search

Ss1.1-Tes1-TES01A050030.5

Sequence:


               
               TTTCCTAACAGACAGGCGCCGGTGTCAGGTGACAGCTGGGGCCCTGCGCCATTCCTCTGG
GGCCTGGGAGGCGACCTTGACACGCTGCTCTAGAGAGCAGTGTGCAGGCAAGGGTTCCAG
GGGAGGGGGCAGTGGGGGACCTGTCGGCACCGAAGTCCAGCTCCAGGCCCAGGGAAGCCC
CCCACTCCCCGTCCAGAGGGCCTGGGTCTGGGGAGCGAGGGGCTCGGGGCGGGGCGTCCA
GCTTGGACCCGGGGCTCCGAGGGGCGTCCCGGCTCGGGCAGGGCGCAGCTGCTGGTTTGG
GGCCCGCGGCTCATCTCTCCGGCAGCAGCAGGAAGAAGGCAGCCTTCAGGAAGCGGCCGA
AGCTGCAGAACGCGGCCACGAGCCAGTGGGAGCGGCGGCCGGGGTCGGCACTGACCACGC
ACTTGAGAAGGTCCGTCCATCCGCCGCGCCTCCGCAGCCAGGTCGCCAGGGTCTTGCGCA
CAAACTCCCCGAGGCAGTCGACAAGGGCATGGACCATGGCGGGCTGGGCCTGCCGCACGC
AGTCCACGGCCAGCCCCGCAGCCACTGAGTAGAGGGACACCACCTTCCCCCACGTGATGC
CTGCAGAGAAGATCTGGGCCGCCACGGCGAGGAAGGCGTCGGTCACCACGGTCTCGGACT
GCAGGGAGAGGTTCAGCTGGCGGGCCACGTTGCGATAGACACTGGGCCGAATCAGCTCCA
GCTCGTCCGCCAGACGCAGCAGCACCGCGCACACCTCGGCCAGACGGCCGCCGGGGGCGG
GCGCGGCGCGCTCGGGCGCGTTCCAGGCGAGGCCGGCGCGCAGCAGCCGCGCGTGCACGA
ACTCCCGGCCGAGGGCCTTGGCCTGGGCCACCAGCTCCTTGTCGGTGGGCGAGCGGTCAA
AGGCGTCCATGATCTCGGCGGCGAAGACCGAGGAGCGCCTCAGCACTTCCATGGCGGGGA
CGCGGGCGGGGGGCGCCGCACCTTTGCGCCTCGCCGTCCTGGATGGTTGTCCCCGGCCTC
GCCGTTCCCATGGCGCGGCCCGCCCTGCTCAGCTCTCCCGCCGCATGTCGCGGGCGCAGG
GGCCGGGGAGGAGTGCTGGCTTCAGGATGTGCTGGCCGCCGTCTCCGCCGATCTGGATCC
TTCCATTCAAACCGGCGAGTACGCGCGCCCCGCCCCGGCGCCCGCCCTGTACACGCCTGA
GCCGGCTGGAGCGCGGAGTGCGCGGGGCCTCGGGGGCTCCGGCGGCGTCGTCGGGGGCGA
GGGGAGCGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTAACAGACAGGCGCCGGTGTCAGGTGACAGCTGGGGCCCTGCGCCATTCCTCTGG
GGCCTGGGAGGCGACCTTGACACGCTGCTCTAGAGAGCAGTGTGCAGGCAAGGGTTCCAG
GGGAGGGGGCAGTGGGGGACCTGTCGGCACCGAAGTCCAGCTCCAGGCCCAGGGAAGCCC
CCCACTCCCCGTCCAGAGGGCCTGGGTCTGGGGAGCGAGGGGCTCGGGGCGGGGCGTCCA
GCTTGGACCCGGGGCTCCGAGGGGCGTCCCGGCTCGGGCAGGGCGCAGCTGCTGGTTTGG
GGCCCGCGGCTCATCTCTCCGGCAGCAGCAGGAAGAAGGCAGCCTTCAGGAAGCGGCCGA
AGCTGCAGAACGCGGCCACGAGCCAGTGGGAGCGGCGGCCGGGGTCGGCACTGACCACGC
ACTTGAGAAGGTCCGTCCATCCGCCGCGCCTCCGCAGCCAGGTCGCCAGGGTCTTGCGCA
CAAACTCCCCGAGGCAGTCGACAAGGGCATGGACCATGGCGGGCTGGGCCTGCCGCACGC
AGTCCACGGCCAGCCCCGCAGCCACTGAGTAGAGGGACACCACCTTCCCCCACGTGATGC
CTGCAGAGAAGATCTGGGCCGCCACGGCGAGGAAGGCGTCGGTCACCACGGTCTCGGACT
GCAGGGAGAGGTTCAGCTGGCGGGCCACGTTGCGATAGACACTGGGCCGAATCAGCTCCA
GCTCGTCCGCCAGACGCAGCAGCACCGCGCACACCTCGGCCAGACGGCCGCCGGGGGCGG
GCGCGGCGCGCTCGGGCGCGTTCCAGGCGAGGCCGGCGCGCAGCAGCCGCGCGTGCACGA
ACTCCCGGCCGAGGGCCTTGGCCTGGGCCACCAGCTCCTTGTCGGTGGGCGAGCGGTCAA
AGGCGTCCATGATCTCGGCGGCGAAGACCGAGGAGCGCCTCAGCACTTCCATGGCGGGGA
CGCGGGCGGGGGGCGCCGCACCTTTGCGCCTCGCCGTCCTGGATGGTTGTCCCCGGCCTC
GCCGTTCCCATGGCGCGGCCCGCCCTGCTCAGCTCTCCCGCCGCATGTCGCGGGCGCAGG
GGCCGGGGAGGAGTGCTGGCTTCAGGATGTGCTGGCCGCCGTCTCCGCCGATCTGGATCC
TTCCATTCAAACCGGCGAGTACGCGCGCCCCGCCCCGGCGCCCGCCCTGTACACGCCTGA
GCCGGCTGGAGCGCGGAGTGCGCGGGGCCTCGGGGGCTCCGGCGGCGTCGTCGGGGGCGA
GGGGAGCGCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8392996|ref|NP_059008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8392996|ref|NP_059008.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               143-437, gnl|bosTau2|chr16 (43970550-43970856)
               

               
               143-437, gnl|Hg17|chr2 (242232046-242231701)
               

               
               143-437, gnl|Mm7|chr1 (93603179-93602845)
               


               
               730-983, gnl|bosTau2|chr16 (43981619-43981872)
               

               
               730-983, gnl|Hg17|chr2 (242219108-242218858)
               

               
               730-983, gnl|Mm7|chr1 (93594478-93594225)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-437, gnl|bosTau2|chr16 (43970550-43970856)
               

               
               143-437, gnl|Hg17|chr2 (242232046-242231701)
               

               
               143-437, gnl|Mm7|chr1 (93603179-93602845)
               


               
               730-983, gnl|bosTau2|chr16 (43981619-43981872)
               

               
               730-983, gnl|Hg17|chr2 (242219108-242218858)
               

               
               730-983, gnl|Mm7|chr1 (93594478-93594225)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               cty (0.20816)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               cty (0.20816)

	143-437, gnl\|bosTau2\|chr16 (43970550-43970856)
	143-437, gnl\|Hg17\|chr2 (242232046-242231701)
	143-437, gnl\|Mm7\|chr1 (93603179-93602845)

	730-983, gnl\|bosTau2\|chr16 (43981619-43981872)
	730-983, gnl\|Hg17\|chr2 (242219108-242218858)
	730-983, gnl\|Mm7\|chr1 (93594478-93594225)