Non-Coding RNA Search

Ss1.1-Tes1-TES01A060002.5.5

Sequence:


               
               CCACCTCCGGCATCCAGGAGGAAAACCCCGCTTGCGGAGCCCATAGGTGTGGCCCACTGA
CGATCGGTGGGAGTCGTGCGTGGGTTGTGAGCCACCTCCGGCATCCAGGAGGAAAACCCC
GCTTGCGGAGCCCATAGATGTCTCATATGGAGCTGGGGTTGGACTCGGGTGACGATGACT
TGCTGGGCTTCCTGTTAGAGGAAAGCGGAGGTCTGGGGGCGGCGCGGGACGAAGCCTTGG
AGGCGCCCCTGGATTGGGAGCTACCACTTTCCGAGGCATTGAGCGATTGGGACGTAGAGG
ATTTCCTGAGCTGCCTGTCGAGTCCCCCAGCATCGTTGACCGATTTTAGCCACTCTGACC
CCTATCTTGTCCACCATGATCACACCTATTCCCTGTCACAGGAGTATGTCTCCATAGATC
TAGATAATGAGGATTATGAGAAGGAAGGGGCCCAAATGACTTCCCTGCGTGTGGAGGCGC
CCGCAGAGCAGGAGATTGGTGAGCTGATACTGACGGAGGAGGAGAAGAGGCTTTTGGAGA
AGGAGGGGCTTACTCTGCCCGGGACACTTCCTCTCACTAAGATGGAGGAACAAGTTCTGA
GACGAGTGCGAAGGAAGATTCGAAACAAAAAGTCTGCTCAAGAGAGCCGCAGGAAGAAGA
AGGTGTATGTGGGGAGTTTAGAGAGCAGGGTCCTGAAATACTCGGCCCAGAATCTGGAGC
TACAGAACAAAGTACAGCTCCTGGAGGAGCAGAATCTGTCCCTTTTGGATCAGTTGAGGA
GGCTGCAGTCCATGGTGATTCAGACGGCAAACAAAGCCAGCAGCAGCAGCACCTGCATCT
TGGTCCTGCTCTTCTCCTTCTGTCTCCTCTTCGTACCTGCCATGTACTCCTCGGACACAA
GGGGGAGCCCGCCAGCCGAGCATGGAGTGTTGTCCCGCCAGCTTCGTGCCCTCCCCAGCG
AGGACGTTCCCCAGCGGGACCTGCCTGCACTGCAGTCAGAGGTACCACAGGACAGCTCAA
CCCACGAGCTCCAGGCTCCTGGCAACTCTTGCTGCCTGTTCCACCACATGGCTTGGGCTC
CTGGGGCAGAATCGCCCATGAAGCTGCCACTGCCCGACCGCTTCTCAAGGTCTTCTAGCC
CAGGTCCCATCTTCCCCCTGCATGCAAATCTCACAAGAGAGGGAGGATGGCTCCCTACCC
ACAGCCCCATATCTGTTACCTTGCAGGGCAGGTACTCAGGCTAGATGTGAGAATGCAGGG
GGCCTCAGCCAGAGCCTGGTGCCCCCAGTCTGTGTTCAAAGGAAAAGGAATGGGAGAGGG
TGAGCCTCAGGTCCTGTCCCCTGTCAGGAAGCCTGAGGGCACAAACACACCACACTTACT
GGCTTTCTGGGGTTTTATTTGCACCCATGTATGTCTGTTGTTCCATTAAGGGGCCTGGGA
GAGTCCACTGACTTCCTTGAACATTTCATGCAATGAGGGGATGGGGTGAAGAAAGAAATA
AATAAGTGATTCTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCTCCGGCATCCAGGAGGAAAACCCCGCTTGCGGAGCCCATAGGTGTGGCCCACTGA
CGATCGGTGGGAGTCGTGCGTGGGTTGTGAGCCACCTCCGGCATCCAGGAGGAAAACCCC
GCTTGCGGAGCCCATAGATGTCTCATATGGAGCTGGGGTTGGACTCGGGTGACGATGACT
TGCTGGGCTTCCTGTTAGAGGAAAGCGGAGGTCTGGGGGCGGCGCGGGACGAAGCCTTGG
AGGCGCCCCTGGATTGGGAGCTACCACTTTCCGAGGCATTGAGCGATTGGGACGTAGAGG
ATTTCCTGAGCTGCCTGTCGAGTCCCCCAGCATCGTTGACCGATTTTAGCCACTCTGACC
CCTATCTTGTCCACCATGATCACACCTATTCCCTGTCACAGGAGTATGTCTCCATAGATC
TAGATAATGAGGATTATGAGAAGGAAGGGGCCCAAATGACTTCCCTGCGTGTGGAGGCGC
CCGCAGAGCAGGAGATTGGTGAGCTGATACTGACGGAGGAGGAGAAGAGGCTTTTGGAGA
AGGAGGGGCTTACTCTGCCCGGGACACTTCCTCTCACTAAGATGGAGGAACAAGTTCTGA
GACGAGTGCGAAGGAAGATTCGAAACAAAAAGTCTGCTCAAGAGAGCCGCAGGAAGAAGA
AGGTGTATGTGGGGAGTTTAGAGAGCAGGGTCCTGAAATACTCGGCCCAGAATCTGGAGC
TACAGAACAAAGTACAGCTCCTGGAGGAGCAGAATCTGTCCCTTTTGGATCAGTTGAGGA
GGCTGCAGTCCATGGTGATTCAGACGGCAAACAAAGCCAGCAGCAGCAGCACCTGCATCT
TGGTCCTGCTCTTCTCCTTCTGTCTCCTCTTCGTACCTGCCATGTACTCCTCGGACACAA
GGGGGAGCCCGCCAGCCGAGCATGGAGTGTTGTCCCGCCAGCTTCGTGCCCTCCCCAGCG
AGGACGTTCCCCAGCGGGACCTGCCTGCACTGCAGTCAGAGGTACCACAGGACAGCTCAA
CCCACGAGCTCCAGGCTCCTGGCAACTCTTGCTGCCTGTTCCACCACATGGCTTGGGCTC
CTGGGGCAGAATCGCCCATGAAGCTGCCACTGCCCGACCGCTTCTCAAGGTCTTCTAGCC
CAGGTCCCATCTTCCCCCTGCATGCAAATCTCACAAGAGAGGGAGGATGGCTCCCTACCC
ACAGCCCCATATCTGTTACCTTGCAGGGCAGGTACTCAGGCTAGATGTGAGAATGCAGGG
GGCCTCAGCCAGAGCCTGGTGCCCCCAGTCTGTGTTCAAAGGAAAAGGAATGGGAGAGGG
TGAGCCTCAGGTCCTGTCCCCTGTCAGGAAGCCTGAGGGCACAAACACACCACACTTACT
GGCTTTCTGGGGTTTTATTTGCACCCATGTATGTCTGTTGTTCCATTAAGGGGCCTGGGA
GAGTCCACTGACTTCCTTGAACATTTCATGCAATGAGGGGATGGGGTGAAGAAAGAAATA
AATAAGTGATTCTGAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CREB3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CREB3_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1005-1338, - strand, RNAz p=0.977858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1005-1338, - strand, RNAz p=0.977858

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-276, gnl|bosTau2|chr8 (28466982-28467261)
               

               
               2-276, gnl|Hg17|chr9 (35722632-35722899)
               

               
               2-276, gnl|Mm7|chr4 (43576502-43576774)
               


               
               280-427, gnl|bosTau2|chr8 (28467375-28467522)
               

               
               280-427, gnl|Hg17|chr9 (35722997-35723144)
               

               
               280-427, gnl|Mm7|chr4 (43576880-43577024)
               


               
               580-689, gnl|bosTau2|chr8 (28469506-28469615)
               

               
               580-689, gnl|Hg17|chr9 (35725104-35725213)
               

               
               580-689, gnl|Mm7|chr4 (43579073-43579182)
               


               
               926-1515, gnl|bosTau2|chr8 (28470742-28471334)
               

               
               926-1515, gnl|Hg17|chr9 (35726387-35726996)
               

               
               926-1515, gnl|Mm7|chr4 (43580281-43580871)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-276, gnl|bosTau2|chr8 (28466982-28467261)
               

               
               2-276, gnl|Hg17|chr9 (35722632-35722899)
               

               
               2-276, gnl|Mm7|chr4 (43576502-43576774)
               


               
               280-427, gnl|bosTau2|chr8 (28467375-28467522)
               

               
               280-427, gnl|Hg17|chr9 (35722997-35723144)
               

               
               280-427, gnl|Mm7|chr4 (43576880-43577024)
               


               
               580-689, gnl|bosTau2|chr8 (28469506-28469615)
               

               
               580-689, gnl|Hg17|chr9 (35725104-35725213)
               

               
               580-689, gnl|Mm7|chr4 (43579073-43579182)
               


               
               926-1515, gnl|bosTau2|chr8 (28470742-28471334)
               

               
               926-1515, gnl|Hg17|chr9 (35726387-35726996)
               

               
               926-1515, gnl|Mm7|chr4 (43580281-43580871)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               nms (0.427716)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	2-276, gnl\|bosTau2\|chr8 (28466982-28467261)
	2-276, gnl\|Hg17\|chr9 (35722632-35722899)
	2-276, gnl\|Mm7\|chr4 (43576502-43576774)

	280-427, gnl\|bosTau2\|chr8 (28467375-28467522)
	280-427, gnl\|Hg17\|chr9 (35722997-35723144)
	280-427, gnl\|Mm7\|chr4 (43576880-43577024)

	580-689, gnl\|bosTau2\|chr8 (28469506-28469615)
	580-689, gnl\|Hg17\|chr9 (35725104-35725213)
	580-689, gnl\|Mm7\|chr4 (43579073-43579182)

	926-1515, gnl\|bosTau2\|chr8 (28470742-28471334)
	926-1515, gnl\|Hg17\|chr9 (35726387-35726996)
	926-1515, gnl\|Mm7\|chr4 (43580281-43580871)

	nms (0.427716)
	fbs (0.350693)
	hyp (0.285673)
	cbe (0.239234)
	col (0.195008)
	nep (0.183925)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)