Ss1.1-Tes1-TES01A060003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCTCTGGGTGCGTTGAGCGTTGTGACACGTACAGCCTCTAAAAAGAGCACGCGGAGG ACGAGGTTCTGCGAGGAGAGAGACTCAGAGCAACCTGGGAGGTGTAGTGCAGTTGACATA GCAGAAGATTCGGGGTGGGCGCTGAGGTTCCGGGAAAGGGCTGAAAAGAGACTGTGGCTA TGCCTTTTAACTGTGTAGCTGGAGTACAAGAAGTGTTTGTTTAATGAATGACCTATCCAT TTAGCACCTACTTAGACCCTAAGGATAACCCTGTGAATTGTGTTGATTTCATCATGCTGC GACGGAAACCAACCCGCCTGGAGCTGAAGCTTGATGACATTGAGGAGTTTGAGAGCATTC GAAAGGATCTGGAGACCCGTAAGAAACAAAAAGAAGATGTGGACGTTGTAGGAGGCAGTG ATGGAGAAGGTGCCATTGGGCTCAGCAGTGACCCCAAGAGCAGGGAACAAATGATCAATG ATCGAATTGGTTATAAACCTCAACCCAAGCCCAACAATCGTTCATCTCAGTTTGGAAGTT TCGAATTTTAGAGGTGGATTATCTCGCATGCCAGAGCCCTGGGATGGAGTCAAATGATGA AAGAAAGATTTAACAGAATGTTTTACCTCCTGCAGAGAGAAACACTTGTGCCTGCTTCAC TTGCACTCTTAGCTGAAATTCAAACTCTGGTTTGTATCTGGAAATTTTCACTCTATAAAA CTTGTCTCATTTTTGTTTTTTGAAATGCATTTTTAGAAGTGTGCAACGTCCTTAATGAAG TTTAATAGCACTGTTGACTTGTTGTATTGTTCTTCCCACCTTTATTAAAAGACCGTAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCTCTGGGTGCGTTGAGCGTTGTGACACGTACAGCCTCTAAAAAGAGCACGCGGAGG ACGAGGTTCTGCGAGGAGAGAGACTCAGAGCAACCTGGGAGGTGTAGTGCAGTTGACATA GCAGAAGATTCGGGGTGGGCGCTGAGGTTCCGGGAAAGGGCTGAAAAGAGACTGTGGCTA TGCCTTTTAACTGTGTAGCTGGAGTACAAGAAGTGTTTGTTTAATGAATGACCTATCCAT TTAGCACCTACTTAGACCCTAAGGATAACCCTGTGAATTGTGTTGATTTCATCATGCTGC GACGGAAACCAACCCGCCTGGAGCTGAAGCTTGATGACATTGAGGAGTTTGAGAGCATTC GAAAGGATCTGGAGACCCGTAAGAAACAAAAAGAAGATGTGGACGTTGTAGGAGGCAGTG ATGGAGAAGGTGCCATTGGGCTCAGCAGTGACCCCAAGAGCAGGGAACAAATGATCAATG ATCGAATTGGTTATAAACCTCAACCCAAGCCCAACAATCGTTCATCTCAGTTTGGAAGTT TCGAATTTTAGAGGTGGATTATCTCGCATGCCAGAGCCCTGGGATGGAGTCAAATGATGA AAGAAAGATTTAACAGAATGTTTTACCTCCTGCAGAGAGAAACACTTGTGCCTGCTTCAC TTGCACTCTTAGCTGAAATTCAAACTCTGGTTTGTATCTGGAAATTTTCACTCTATAAAA CTTGTCTCATTTTTGTTTTTTGAAATGCATTTTTAGAAGTGTGCAACGTCCTTAATGAAG TTTAATAGCACTGTTGACTTGTTGTATTGTTCTTCCCACCTTTATTAAAAGACCGTAAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 6-168, gnl|bosTau2|chr8 (52995295-52995458) | |
| 6-168, gnl|canFam2|chr11 (70670381-70670782) | |
| 6-168, gnl|dasNov1|scaffold_5643 (109492-109076) | |
| 6-168, gnl|echTel1|scaffold_298203 (3380-3751) | |
| 6-168, gnl|hg17|chr9 (113117103-113117549) | |
| 6-168, gnl|Hg17|chr9 (113117390-113117228) | |
| 6-168, gnl|loxAfr1|scaffold_35998 (9575-9148) | |
| 6-168, gnl|mm7|chr4 (61842162-61842542) | |
| 6-168, gnl|Mm7|chr4 (61842415-61842260) | |
| 6-168, gnl|monDom2|scaffold_51 (1568751-1568290) | |
| 6-168, gnl|oryCun1|scaffold_204907 (109946-110353) | |
| 6-168, gnl|panTro1|chr11 (97650995-97651440) | |
| 6-168, gnl|rheMac2|chr15 (22843047-22842601) | |
| 6-168, gnl|rn3|chr5 (79408654-79409038) | |
| 169-280, gnl|bosTau2|chr8 (53001161-53001272) | |
| 169-280, gnl|Hg17|chr9 (113115274-113115163) | |
| 169-280, gnl|Mm7|chr4 (61838250-61838152) | |
| 373-606, gnl|bosTau2|chr8 (53006154-53006387) | |
| 373-606, gnl|Hg17|chr9 (113109275-113109042) | |
| 373-606, gnl|Mm7|chr4 (61828719-61828486) | |
| 613-840, gnl|bosTau2|chr8 (53006426-53006655) | |
| 613-840, gnl|Hg17|chr9 (113109003-113108736) | |
| 613-840, gnl|Mm7|chr4 (61828447-61828176) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-168, gnl|bosTau2|chr8 (52995295-52995458) | |
| 6-168, gnl|canFam2|chr11 (70670381-70670782) | |
| 6-168, gnl|dasNov1|scaffold_5643 (109492-109076) | |
| 6-168, gnl|echTel1|scaffold_298203 (3380-3751) | |
| 6-168, gnl|hg17|chr9 (113117103-113117549) | |
| 6-168, gnl|Hg17|chr9 (113117390-113117228) | |
| 6-168, gnl|loxAfr1|scaffold_35998 (9575-9148) | |
| 6-168, gnl|mm7|chr4 (61842162-61842542) | |
| 6-168, gnl|Mm7|chr4 (61842415-61842260) | |
| 6-168, gnl|monDom2|scaffold_51 (1568751-1568290) | |
| 6-168, gnl|oryCun1|scaffold_204907 (109946-110353) | |
| 6-168, gnl|panTro1|chr11 (97650995-97651440) | |
| 6-168, gnl|rheMac2|chr15 (22843047-22842601) | |
| 6-168, gnl|rn3|chr5 (79408654-79409038) | |
| 169-280, gnl|bosTau2|chr8 (53001161-53001272) | |
| 169-280, gnl|Hg17|chr9 (113115274-113115163) | |
| 169-280, gnl|Mm7|chr4 (61838250-61838152) | |
| 373-606, gnl|bosTau2|chr8 (53006154-53006387) | |
| 373-606, gnl|Hg17|chr9 (113109275-113109042) | |
| 373-606, gnl|Mm7|chr4 (61828719-61828486) | |
| 613-840, gnl|bosTau2|chr8 (53006426-53006655) | |
| 613-840, gnl|Hg17|chr9 (113109003-113108736) | |
| 613-840, gnl|Mm7|chr4 (61828447-61828176) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cte (1.17096) | |
| cbe (0.478469) | |
| lun (0.451467) | |
| isp (0.300752) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| cbe (0.478469) | |
| lun (0.451467) | |
| isp (0.300752) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| mga (0.160205) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| cly (0.120642) | |
| eje (0.0988338) |