Ss1.1-Tes1-TES01A060035.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCCGAAGTCAGCGTTGCCGAGGCCGGTCCGGGATCGGAGCCTGTTCTGCGCGGACGCC GCTCCCATGGCCCAGTTCGTGTTCGAGAGCGACCTGCACTCCCTGCTGCAGCTGGATGCG CCCATCCCCAATGCACCTCCCGCGCGCTGGCAGCGCAAAGCGAAGGAAGCCGCGGGGCCG GCCCCCTCGCCCATGCGGGCCGCCAACCGATCCCACAGCGCCGGCAGGACCCCCGGCCGA ACGCCGGGCAAATCCAACTCCAAGATGCAGACCACTCCCAGCAAGCCTGGCGGCGATCGC TATATCCCCCACCGCAGTGCCTCCCAGATGGAGGTGGCCAGCTTCCTCCTGAGCAAGGAG AACCAGCCCGACAACAGCCAGACGCCCACCAAGAAGGAACATCAGAAGGCCTGGGCTCTG AACCTGAACGGTTTTGACGTGGAGGAAGCCAAGATCCTCCGGCTCAGTGGAAAACCACAG AACGCCCCAGAGGGTTACCAGAACAGACTGAAAGTACTCTACAGCCAGAAGGCCACGCCC GGGTCCAGCAGGAAGACCTGCCGTTACATCCCTTCCCTGCCGGACCGGATCCTGGATGCC CCTGAAATCCGCAACGACTACTACCTGAACCTGGTGGACTGGAGCTCTGGGAACGTACTG GCTGTGGCCTTGGACAACAGCGTGTACTTGTGGAGTGCCAGCTCTGGTGACATCCTGCAG CTGCTGCAGATGGAGCAGCCTGGGGACTATGTGTCTTCTGTGGCCTGGATCAAAGAGGGC AACTACCTGGCTGTGGGCACCAGCAGTGCTGAGGTCCAGCTCTGGGATGTGCAACAGCAG AAACGGCTTCGAAACATGACCAGTCATTCTGCCCGAGTGGGCTCCCTCTGTTGGAACAGC TACATCCTGTCCAGTGGCTCACGTTCCGGCCACATCCACCACCATGATGTTCGGGTGGCA GAACACCATGTGGCCACACTGAGTGGCCACAGCCAGGAAGTGTGTGGGCTGCGCTGGGCC CCAGACGGTCGACATCTAGCCAGTGGTGGCAACGATAACTTGGTCAATGTGTGGCCTAGT GCTCCTGGAGAGGGTGGCTGGGTTCCTCTGCAGACATTCACGCAGCACCAAGGAGCTGTC AAGGCTGTAGCTTGGTGTCCCTGGCAGTCCAATGTCCTGGCAACTGGAGGGGGCACCAGT GATCGACACATTCGAATCTGGAACGTCTGCTCTGGGGCCTGTCTGAGTGCCGTGGACGCC CATTCCCAGGTGTGCTCCATTCTCTGGTCTCCCCACTACAAGGAGCTCATTTCAGGCCAT GGCTTTGCCCAGAACCAGCTGGTTATTTGGAAGTACCCCACCATGGCCAAGGTGGCTGAG CTGAAAGGTCACACAGCCCGGGTCCTGAGTCTGACCATGAGCCCAGACGGGGCCACAGTG GCATCAGCAGCAGCAGATGAGACCCTGCGGCTGTGGCGCTGCTTTGAGCTGGACCCTGCA CGGCGGCGGGAGCGGGAGAAGGCCAGCGCAGCCAAAAGCAGCCTCATCCACCAAGGCATC CGGTGAGGACCACCGCATCAGCTCGGTTTTTTTTGTGCTGTCTTTTTTTTTTTACTTTTC TAATAAAGCCACCATGTCTCACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCCGAAGTCAGCGTTGCCGAGGCCGGTCCGGGATCGGAGCCTGTTCTGCGCGGACGCC GCTCCCATGGCCCAGTTCGTGTTCGAGAGCGACCTGCACTCCCTGCTGCAGCTGGATGCG CCCATCCCCAATGCACCTCCCGCGCGCTGGCAGCGCAAAGCGAAGGAAGCCGCGGGGCCG GCCCCCTCGCCCATGCGGGCCGCCAACCGATCCCACAGCGCCGGCAGGACCCCCGGCCGA ACGCCGGGCAAATCCAACTCCAAGATGCAGACCACTCCCAGCAAGCCTGGCGGCGATCGC TATATCCCCCACCGCAGTGCCTCCCAGATGGAGGTGGCCAGCTTCCTCCTGAGCAAGGAG AACCAGCCCGACAACAGCCAGACGCCCACCAAGAAGGAACATCAGAAGGCCTGGGCTCTG AACCTGAACGGTTTTGACGTGGAGGAAGCCAAGATCCTCCGGCTCAGTGGAAAACCACAG AACGCCCCAGAGGGTTACCAGAACAGACTGAAAGTACTCTACAGCCAGAAGGCCACGCCC GGGTCCAGCAGGAAGACCTGCCGTTACATCCCTTCCCTGCCGGACCGGATCCTGGATGCC CCTGAAATCCGCAACGACTACTACCTGAACCTGGTGGACTGGAGCTCTGGGAACGTACTG GCTGTGGCCTTGGACAACAGCGTGTACTTGTGGAGTGCCAGCTCTGGTGACATCCTGCAG CTGCTGCAGATGGAGCAGCCTGGGGACTATGTGTCTTCTGTGGCCTGGATCAAAGAGGGC AACTACCTGGCTGTGGGCACCAGCAGTGCTGAGGTCCAGCTCTGGGATGTGCAACAGCAG AAACGGCTTCGAAACATGACCAGTCATTCTGCCCGAGTGGGCTCCCTCTGTTGGAACAGC TACATCCTGTCCAGTGGCTCACGTTCCGGCCACATCCACCACCATGATGTTCGGGTGGCA GAACACCATGTGGCCACACTGAGTGGCCACAGCCAGGAAGTGTGTGGGCTGCGCTGGGCC CCAGACGGTCGACATCTAGCCAGTGGTGGCAACGATAACTTGGTCAATGTGTGGCCTAGT GCTCCTGGAGAGGGTGGCTGGGTTCCTCTGCAGACATTCACGCAGCACCAAGGAGCTGTC AAGGCTGTAGCTTGGTGTCCCTGGCAGTCCAATGTCCTGGCAACTGGAGGGGGCACCAGT GATCGACACATTCGAATCTGGAACGTCTGCTCTGGGGCCTGTCTGAGTGCCGTGGACGCC CATTCCCAGGTGTGCTCCATTCTCTGGTCTCCCCACTACAAGGAGCTCATTTCAGGCCAT GGCTTTGCCCAGAACCAGCTGGTTATTTGGAAGTACCCCACCATGGCCAAGGTGGCTGAG CTGAAAGGTCACACAGCCCGGGTCCTGAGTCTGACCATGAGCCCAGACGGGGCCACAGTG GCATCAGCAGCAGCAGATGAGACCCTGCGGCTGTGGCGCTGCTTTGAGCTGGACCCTGCA CGGCGGCGGGAGCGGGAGAAGGCCAGCGCAGCCAAAAGCAGCCTCATCCACCAAGGCATC CGGTGAGGACCACCGCATCAGCTCGGTTTTTTTTGTGCTGTCTTTTTTTTTTTACTTTTC TAATAAAGCCACCATGTCTCACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 505-622, + strand, RNAz p=0.519263 | |
| 912-1110, + strand, RNAz p=0.930844 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 505-622, + strand, RNAz p=0.519263 | |
| 912-1110, + strand, RNAz p=0.930844 |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 60-248, gnl|bosTau2|chr3 (71724654-71724842) | |
| 60-248, gnl|Hg17|chr1 (43493973-43494161) | |
| 60-248, gnl|Mm7|chr4 (117813567-117813379) | |
| 493-622, gnl|bosTau2|chr3 (71725447-71725576) | |
| 493-622, gnl|canFam2|chr15 (19817625-19817466) | |
| 493-622, gnl|canFam2|chr15 (19817615-19817489) | |
| 493-622, gnl|danRer3|chr2 (9745817-9745675) | |
| 493-622, gnl|danRer3|chr2 (9745807-9745684) | |
| 493-622, gnl|dasNov1|scaffold_791 (73809-73968) | |
| 493-622, gnl|dasNov1|scaffold_791 (73819-73945) | |
| 493-622, gnl|echTel1|scaffold_280394 (8620-8469) | |
| 493-622, gnl|echTel1|scaffold_280394 (8610-8484) | |
| 493-622, gnl|fr1|chrUn (264253045-264252909) | |
| 493-622, gnl|fr1|chrUn (264253040-264252917) | |
| 493-622, gnl|galGal2|chr8 (19977702-19977839) | |
| 493-622, gnl|galGal2|chr8 (19977707-19977833) | |
| 493-622, gnl|hg17|chr1 (43494726-43494885) | |
| 493-622, gnl|Hg17|chr1 (43494732-43494861) | |
| 493-622, gnl|hg17|chr9 (86856554-86856680) | |
| 493-622, gnl|loxAfr1|scaffold_82273 (71-230) | |
| 493-622, gnl|loxAfr1|scaffold_82273 (81-207) | |
| 493-622, gnl|mm7|chr16 (91564571-91564445) | |
| 493-622, gnl|mm7|chr4 (117812836-117812681) | |
| 493-622, gnl|Mm7|chr4 (117812828-117812699) | |
| 493-622, gnl|monDom2|scaffold_87 (152767-152618) | |
| 493-622, gnl|monDom2|scaffold_87 (152757-152628) | |
| 493-622, gnl|oryCun1|scaffold_208417 (37873-37719) | |
| 493-622, gnl|oryCun1|scaffold_208417 (37863-37737) | |
| 493-622, gnl|panTro1|chr1 (44474168-44474327) | |
| 493-622, gnl|panTro1|chr11 (70911789-70911915) | |
| 493-622, gnl|rheMac2|chr1 (46267173-46267332) | |
| 493-622, gnl|rheMac2|chr1 (46267183-46267309) | |
| 493-622, gnl|rn3|chr5 (138921082-138920924) | |
| 493-622, gnl|rn3|chr5 (138921072-138920946) | |
| 493-622, gnl|tetNig1|chr15 (5703774-5703908) | |
| 493-622, gnl|tetNig1|chr15 (5703779-5703902) | |
| 493-622, gnl|xenTro1|scaffold_1 (5563827-5563988) | |
| 493-622, gnl|xenTro1|scaffold_1 (5563832-5563958) | |
| 623-819, gnl|bosTau2|chr3 (71725677-71725873) | |
| 623-819, gnl|canFam2|chr15 (19817378-19817157) | |
| 623-819, gnl|canFam2|chr15 (19817375-19817179) | |
| 623-819, gnl|danRer3|chr2 (9745597-9745372) | |
| 623-819, gnl|danRer3|chr2 (9745594-9745403) | |
| 623-819, gnl|dasNov1|scaffold_791 (74041-74262) | |
| 623-819, gnl|dasNov1|scaffold_791 (74044-74239) | |
| 623-819, gnl|echTel1|scaffold_280394 (8398-8177) | |
| 623-819, gnl|echTel1|scaffold_280394 (8395-8201) | |
| 623-819, gnl|fr1|chrUn (264252826-264252596) | |
| 623-819, gnl|fr1|chrUn (264252824-264252633) | |
| 623-819, gnl|galGal2|chr8 (19978207-19978411) | |
| 623-819, gnl|galGal2|chr8 (19978210-19978402) | |
| 623-819, gnl|hg17|chr1 (43494955-43495175) | |
| 623-819, gnl|Hg17|chr1 (43494957-43495153) | |
| 623-819, gnl|hg17|chr9 (86856681-86856877) | |
| 623-819, gnl|loxAfr1|scaffold_82273 (303-524) | |
| 623-819, gnl|loxAfr1|scaffold_82273 (306-502) | |
| 623-819, gnl|mm7|chr16 (91564444-91564248) | |
| 623-819, gnl|mm7|chr4 (117812608-117812386) | |
| 623-819, gnl|Mm7|chr4 (117812604-117812408) | |
| 623-819, gnl|monDom2|scaffold_87 (152538-152322) | |
| 623-819, gnl|monDom2|scaffold_87 (152535-152339) | |
| 623-819, gnl|oryCun1|scaffold_208417 (37649-37428) | |
| 623-819, gnl|oryCun1|scaffold_208417 (37646-37450) | |
| 623-819, gnl|panTro1|chr1 (44474397-44474617) | |
| 623-819, gnl|panTro1|chr11 (70911916-70912112) | |
| 623-819, gnl|rheMac2|chr1 (46267402-46267622) | |
| 623-819, gnl|rheMac2|chr1 (46267405-46267599) | |
| 623-819, gnl|rn3|chr5 (138920853-138920632) | |
| 623-819, gnl|rn3|chr5 (138920850-138920654) | |
| 623-819, gnl|tetNig1|chr15 (5704052-5704283) | |
| 623-819, gnl|tetNig1|chr15 (5704055-5704246) | |
| 623-819, gnl|xenTro1|scaffold_1 (5564059-5564263) | |
| 623-819, gnl|xenTro1|scaffold_1 (5564062-5564258) | |
| 912-1144, gnl|bosTau2|chr3 (71726213-71726445) | |
| 912-1144, gnl|Hg17|chr1 (43495494-43495726) | |
| 912-1144, gnl|Mm7|chr4 (117812142-117811911) | |
| 1386-1632, gnl|bosTau2|chr3 (71728090-71728338) | |
| 1386-1632, gnl|canFam2|chr15 (19815173-19814993) | |
| 1386-1632, gnl|danRer3|chr2 (9732567-9732402) | |
| 1386-1632, gnl|dasNov1|scaffold_791 (76898-77078) | |
| 1386-1632, gnl|echTel1|scaffold_280394 (5692-5516) | |
| 1386-1632, gnl|fr1|chrUn (264251518-264251356) | |
| 1386-1632, gnl|galGal2|chr8 (19980468-19980648) | |
| 1386-1632, gnl|Hg17|chr1 (43497713-43497941) | |
| 1386-1632, gnl|hg17|chr9 (86857441-86857621) | |
| 1386-1632, gnl|loxAfr1|scaffold_33613 (18796-18972) | |
| 1386-1632, gnl|mm7|chr16 (91563680-91563489) | |
| 1386-1632, gnl|Mm7|chr4 (117809582-117809350) | |
| 1386-1632, gnl|monDom2|scaffold_87 (151372-151192) | |
| 1386-1632, gnl|oryCun1|scaffold_208417 (35172-34993) | |
| 1386-1632, gnl|panTro1|chr11 (70912676-70912856) | |
| 1386-1632, gnl|rheMac2|chr1 (46270166-46270345) | |
| 1386-1632, gnl|rn3|chr5 (131148798-131148643) | |
| 1386-1632, gnl|tetNig1|chr15 (5705344-5705505) | |
| 1386-1632, gnl|xenTro1|scaffold_1 (5566896-5567073) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-248, gnl|bosTau2|chr3 (71724654-71724842) | |
| 60-248, gnl|Hg17|chr1 (43493973-43494161) | |
| 60-248, gnl|Mm7|chr4 (117813567-117813379) | |
| 493-622, gnl|bosTau2|chr3 (71725447-71725576) | |
| 493-622, gnl|canFam2|chr15 (19817625-19817466) | |
| 493-622, gnl|canFam2|chr15 (19817615-19817489) | |
| 493-622, gnl|danRer3|chr2 (9745817-9745675) | |
| 493-622, gnl|danRer3|chr2 (9745807-9745684) | |
| 493-622, gnl|dasNov1|scaffold_791 (73809-73968) | |
| 493-622, gnl|dasNov1|scaffold_791 (73819-73945) | |
| 493-622, gnl|echTel1|scaffold_280394 (8620-8469) | |
| 493-622, gnl|echTel1|scaffold_280394 (8610-8484) | |
| 493-622, gnl|fr1|chrUn (264253045-264252909) | |
| 493-622, gnl|fr1|chrUn (264253040-264252917) | |
| 493-622, gnl|galGal2|chr8 (19977702-19977839) | |
| 493-622, gnl|galGal2|chr8 (19977707-19977833) | |
| 493-622, gnl|hg17|chr1 (43494726-43494885) | |
| 493-622, gnl|Hg17|chr1 (43494732-43494861) | |
| 493-622, gnl|hg17|chr9 (86856554-86856680) | |
| 493-622, gnl|loxAfr1|scaffold_82273 (71-230) | |
| 493-622, gnl|loxAfr1|scaffold_82273 (81-207) | |
| 493-622, gnl|mm7|chr16 (91564571-91564445) | |
| 493-622, gnl|mm7|chr4 (117812836-117812681) | |
| 493-622, gnl|Mm7|chr4 (117812828-117812699) | |
| 493-622, gnl|monDom2|scaffold_87 (152767-152618) | |
| 493-622, gnl|monDom2|scaffold_87 (152757-152628) | |
| 493-622, gnl|oryCun1|scaffold_208417 (37873-37719) | |
| 493-622, gnl|oryCun1|scaffold_208417 (37863-37737) | |
| 493-622, gnl|panTro1|chr1 (44474168-44474327) | |
| 493-622, gnl|panTro1|chr11 (70911789-70911915) | |
| 493-622, gnl|rheMac2|chr1 (46267173-46267332) | |
| 493-622, gnl|rheMac2|chr1 (46267183-46267309) | |
| 493-622, gnl|rn3|chr5 (138921082-138920924) | |
| 493-622, gnl|rn3|chr5 (138921072-138920946) | |
| 493-622, gnl|tetNig1|chr15 (5703774-5703908) | |
| 493-622, gnl|tetNig1|chr15 (5703779-5703902) | |
| 493-622, gnl|xenTro1|scaffold_1 (5563827-5563988) | |
| 493-622, gnl|xenTro1|scaffold_1 (5563832-5563958) | |
| 623-819, gnl|bosTau2|chr3 (71725677-71725873) | |
| 623-819, gnl|canFam2|chr15 (19817378-19817157) | |
| 623-819, gnl|canFam2|chr15 (19817375-19817179) | |
| 623-819, gnl|danRer3|chr2 (9745597-9745372) | |
| 623-819, gnl|danRer3|chr2 (9745594-9745403) | |
| 623-819, gnl|dasNov1|scaffold_791 (74041-74262) | |
| 623-819, gnl|dasNov1|scaffold_791 (74044-74239) | |
| 623-819, gnl|echTel1|scaffold_280394 (8398-8177) | |
| 623-819, gnl|echTel1|scaffold_280394 (8395-8201) | |
| 623-819, gnl|fr1|chrUn (264252826-264252596) | |
| 623-819, gnl|fr1|chrUn (264252824-264252633) | |
| 623-819, gnl|galGal2|chr8 (19978207-19978411) | |
| 623-819, gnl|galGal2|chr8 (19978210-19978402) | |
| 623-819, gnl|hg17|chr1 (43494955-43495175) | |
| 623-819, gnl|Hg17|chr1 (43494957-43495153) | |
| 623-819, gnl|hg17|chr9 (86856681-86856877) | |
| 623-819, gnl|loxAfr1|scaffold_82273 (303-524) | |
| 623-819, gnl|loxAfr1|scaffold_82273 (306-502) | |
| 623-819, gnl|mm7|chr16 (91564444-91564248) | |
| 623-819, gnl|mm7|chr4 (117812608-117812386) | |
| 623-819, gnl|Mm7|chr4 (117812604-117812408) | |
| 623-819, gnl|monDom2|scaffold_87 (152538-152322) | |
| 623-819, gnl|monDom2|scaffold_87 (152535-152339) | |
| 623-819, gnl|oryCun1|scaffold_208417 (37649-37428) | |
| 623-819, gnl|oryCun1|scaffold_208417 (37646-37450) | |
| 623-819, gnl|panTro1|chr1 (44474397-44474617) | |
| 623-819, gnl|panTro1|chr11 (70911916-70912112) | |
| 623-819, gnl|rheMac2|chr1 (46267402-46267622) | |
| 623-819, gnl|rheMac2|chr1 (46267405-46267599) | |
| 623-819, gnl|rn3|chr5 (138920853-138920632) | |
| 623-819, gnl|rn3|chr5 (138920850-138920654) | |
| 623-819, gnl|tetNig1|chr15 (5704052-5704283) | |
| 623-819, gnl|tetNig1|chr15 (5704055-5704246) | |
| 623-819, gnl|xenTro1|scaffold_1 (5564059-5564263) | |
| 623-819, gnl|xenTro1|scaffold_1 (5564062-5564258) | |
| 912-1144, gnl|bosTau2|chr3 (71726213-71726445) | |
| 912-1144, gnl|Hg17|chr1 (43495494-43495726) | |
| 912-1144, gnl|Mm7|chr4 (117812142-117811911) | |
| 1386-1632, gnl|bosTau2|chr3 (71728090-71728338) | |
| 1386-1632, gnl|canFam2|chr15 (19815173-19814993) | |
| 1386-1632, gnl|danRer3|chr2 (9732567-9732402) | |
| 1386-1632, gnl|dasNov1|scaffold_791 (76898-77078) | |
| 1386-1632, gnl|echTel1|scaffold_280394 (5692-5516) | |
| 1386-1632, gnl|fr1|chrUn (264251518-264251356) | |
| 1386-1632, gnl|galGal2|chr8 (19980468-19980648) | |
| 1386-1632, gnl|Hg17|chr1 (43497713-43497941) | |
| 1386-1632, gnl|hg17|chr9 (86857441-86857621) | |
| 1386-1632, gnl|loxAfr1|scaffold_33613 (18796-18972) | |
| 1386-1632, gnl|mm7|chr16 (91563680-91563489) | |
| 1386-1632, gnl|Mm7|chr4 (117809582-117809350) | |
| 1386-1632, gnl|monDom2|scaffold_87 (151372-151192) | |
| 1386-1632, gnl|oryCun1|scaffold_208417 (35172-34993) | |
| 1386-1632, gnl|panTro1|chr11 (70912676-70912856) | |
| 1386-1632, gnl|rheMac2|chr1 (46270166-46270345) | |
| 1386-1632, gnl|rn3|chr5 (131148798-131148643) | |
| 1386-1632, gnl|tetNig1|chr15 (5705344-5705505) | |
| 1386-1632, gnl|xenTro1|scaffold_1 (5566896-5567073) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fty (0.351679) | |
| tes (0.207814) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| tes (0.207814) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| jej (0.0989218) |