Ss1.1-Tes1-TES01A060104.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAGAAGGAAGCCCCAGAGCTGGAGACTGAGAGGCTTTGGCGAGGCAGGGAGAGGAGT TCCTGCTGGTGAGAGCTGAGATTCTCTGGAAGGAGACCAGAAGTGGAGCGTCCTCTTGAG GAAGAAGCGGGGCAGCAGGGGCATCAGGAAGTGAAGATCCCTGGAGAGGAGCAGAGTGAG GAGAGGAGAGGAAGGGTGGGACAGCCCTTCCCAGCAGGCAGGATGTGTGGGAAGCAGATG CCCCGCCGAAGGGCCCCTCCTAGCCCGTCCTCAGCAATTGCTTCCTCTCACTGCCCCATC CTTTCTGCAGTGAGGTGGTGCTGTTCGGCCCAGCAGATGAGGAAGTGGCAGGCAGGCCGG CCCTGGGGACTCCTCTCTGGCCCTGCTCCCTCCGAGCCCTCCGCGACTGCCCGCCTGGCC CCCGCTGAACCCTTAGCCGGGATGGAGGCTGTGGTGAACTTGTACCAGGAGATGATGAAG CACGCAGATCCTCGGATCCAGAACTACCCTCTGATGGGGTCCCCCCTGCTAATGACCTCC ATCCTCCTAAGCTACGTGTACTTCGTTCTCTCACTTGGGCCTCGCCTCATGGCCAATCGG AAGCCCTTCCAGCTCCGAGGCTTCATGGTTGTCTACAACTTCTCACTGGTGGCACTTTCC CTCTACATCGTCTATGAGTTCCTGATGTCAGGCTGGCTGAGTACCTACACCTGGCGCTGC GATCCAGTGGACTTTTCCAACAGCCCGGAGGCCCTGAGGATGGTTCGAGTGGCCTGGCTC TTCCTCTTCTCCAAGTTCATTGAGCTGATGGACACAGTGATCTTTATTCTCCGGAAAAAG GACGGACAGGTGACCTTCCTCCACGTCTTCCACCACTCGGTGCTCCCCTGGAGCTGGTGG TGGGGCGTCAAAATTGCCCCAGGAGGAATGGGCTCTTTCCACGCCATGATAAACTCCTCT GTGCACGTCGTCATGTACCTGTACTACGGGTTGTCCGCCCTGGGCCCTGTGGCCCAGCCC TACCTTTGGTGGAAAAAGCACATGACAGCCATCCAGCTGGTCCAGTTCGTGCTGGTGTCC CTGCACGTCTCCCAGTACTACTTCGTGCCGGCCTGCGACTACCAGTTCCCGGTCATCATC CACCTCATCTGGGTGTACGGCACGGTCTTCTTCGCGCTCTTCTCCAACTTCTGGTATCAG GCGTACACCAAGGGCAAGCGGCTGCCCCGCGTCCTTCCGCAGAATGGAGCTCCAGGGACC GCCAGAGTCAAGGCCAACTGAGACACACGGCCGAGCTGGACGCCCACCTAAGTGCCTCAG GACTGCACCTCAGGCAGCATCTGTCATTGTCCACCCCAGCGACACCTGTGGCCAGGACGG AGCAGGGGACAGGCATCCACTCCCCACAGCTGGTACACAGGGACCACTGCTTCCGTTCCT CCCCACGTCTCCCAGCCAGCCCCAGGGATGTGGCTCATGGCCCTCGGCCACTCCAGAGCT GGGGACCGAAAGGGCTGGACACTTCCTCCCCCCTCCCTGCCTTACACTTGGGAGAGGAGC ACTCAGGGCTGGCCCCCGCCAGGGCCTCGTGGCCTTTTTCCTCACACTGAAGAGGGCAGC AATAACCTGTCACTGCGGACCCAGGCTCCTTCCATGTCCGCCCCACACTGAAGCAGGAGC TTCTTGGCCAAAGGTCAGGGTGGGTGGGGGGCCTGGGCATACAGCCTGTGGAGGCTGATT ACTCCCCGTGTCTTCATTAAAGTGACAGAGGAAAGCGCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAGAAGGAAGCCCCAGAGCTGGAGACTGAGAGGCTTTGGCGAGGCAGGGAGAGGAGT TCCTGCTGGTGAGAGCTGAGATTCTCTGGAAGGAGACCAGAAGTGGAGCGTCCTCTTGAG GAAGAAGCGGGGCAGCAGGGGCATCAGGAAGTGAAGATCCCTGGAGAGGAGCAGAGTGAG GAGAGGAGAGGAAGGGTGGGACAGCCCTTCCCAGCAGGCAGGATGTGTGGGAAGCAGATG CCCCGCCGAAGGGCCCCTCCTAGCCCGTCCTCAGCAATTGCTTCCTCTCACTGCCCCATC CTTTCTGCAGTGAGGTGGTGCTGTTCGGCCCAGCAGATGAGGAAGTGGCAGGCAGGCCGG CCCTGGGGACTCCTCTCTGGCCCTGCTCCCTCCGAGCCCTCCGCGACTGCCCGCCTGGCC CCCGCTGAACCCTTAGCCGGGATGGAGGCTGTGGTGAACTTGTACCAGGAGATGATGAAG CACGCAGATCCTCGGATCCAGAACTACCCTCTGATGGGGTCCCCCCTGCTAATGACCTCC ATCCTCCTAAGCTACGTGTACTTCGTTCTCTCACTTGGGCCTCGCCTCATGGCCAATCGG AAGCCCTTCCAGCTCCGAGGCTTCATGGTTGTCTACAACTTCTCACTGGTGGCACTTTCC CTCTACATCGTCTATGAGTTCCTGATGTCAGGCTGGCTGAGTACCTACACCTGGCGCTGC GATCCAGTGGACTTTTCCAACAGCCCGGAGGCCCTGAGGATGGTTCGAGTGGCCTGGCTC TTCCTCTTCTCCAAGTTCATTGAGCTGATGGACACAGTGATCTTTATTCTCCGGAAAAAG GACGGACAGGTGACCTTCCTCCACGTCTTCCACCACTCGGTGCTCCCCTGGAGCTGGTGG TGGGGCGTCAAAATTGCCCCAGGAGGAATGGGCTCTTTCCACGCCATGATAAACTCCTCT GTGCACGTCGTCATGTACCTGTACTACGGGTTGTCCGCCCTGGGCCCTGTGGCCCAGCCC TACCTTTGGTGGAAAAAGCACATGACAGCCATCCAGCTGGTCCAGTTCGTGCTGGTGTCC CTGCACGTCTCCCAGTACTACTTCGTGCCGGCCTGCGACTACCAGTTCCCGGTCATCATC CACCTCATCTGGGTGTACGGCACGGTCTTCTTCGCGCTCTTCTCCAACTTCTGGTATCAG GCGTACACCAAGGGCAAGCGGCTGCCCCGCGTCCTTCCGCAGAATGGAGCTCCAGGGACC GCCAGAGTCAAGGCCAACTGAGACACACGGCCGAGCTGGACGCCCACCTAAGTGCCTCAG GACTGCACCTCAGGCAGCATCTGTCATTGTCCACCCCAGCGACACCTGTGGCCAGGACGG AGCAGGGGACAGGCATCCACTCCCCACAGCTGGTACACAGGGACCACTGCTTCCGTTCCT CCCCACGTCTCCCAGCCAGCCCCAGGGATGTGGCTCATGGCCCTCGGCCACTCCAGAGCT GGGGACCGAAAGGGCTGGACACTTCCTCCCCCCTCCCTGCCTTACACTTGGGAGAGGAGC ACTCAGGGCTGGCCCCCGCCAGGGCCTCGTGGCCTTTTTCCTCACACTGAAGAGGGCAGC AATAACCTGTCACTGCGGACCCAGGCTCCTTCCATGTCCGCCCCACACTGAAGCAGGAGC TTCTTGGCCAAAGGTCAGGGTGGGTGGGGGGCCTGGGCATACAGCCTGTGGAGGCTGATT ACTCCCCGTGTCTTCATTAAAGTGACAGAGGAAAGCGCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | More info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 51-244, gnl|bosTau2|chr3 (71731121-71730913) | |
| 51-244, gnl|Hg17|chr1 (43500744-43500555) | |
| 325-427, gnl|bosTau2|chr3 (71733311-71733209) | |
| 325-427, gnl|canFam2|chr15 (19810186-19810068) | |
| 325-427, gnl|echTel1|scaffold_280394 (561-444) | |
| 325-427, gnl|hg17|chr1 (43502660-43502782) | |
| 325-427, gnl|Hg17|chr1 (43502785-43502679) | |
| 325-427, gnl|loxAfr1|scaffold_82273 (8120-8239) | |
| 325-427, gnl|mm7|chr4 (117804675-117804558) | |
| 325-427, gnl|Mm7|chr4 (117804553-117804654) | |
| 325-427, gnl|monDom2|scaffold_87 (147164-147010) | |
| 325-427, gnl|panTro1|chr1 (44482098-44482220) | |
| 325-427, gnl|rheMac2|chr1 (46275095-46275217) | |
| 325-427, gnl|rn3|chr5 (138913197-138913080) | |
| 486-678, gnl|bosTau2|chr3 (71730515-71730323) | |
| 486-678, gnl|canFam2|chr15 (19813021-19812790) | |
| 486-678, gnl|danRer3|chr2 (9713635-9713428) | |
| 486-678, gnl|dasNov1|scaffold_205677 (309-96) | |
| 486-678, gnl|echTel1|scaffold_280394 (3576-3345) | |
| 486-678, gnl|fr1|chrUn (264248927-264248704) | |
| 486-678, gnl|galGal2|chr8 (19986414-19986633) | |
| 486-678, gnl|hg17|chr1 (43499946-43500178) | |
| 486-678, gnl|Hg17|chr1 (43500142-43499950) | |
| 486-678, gnl|loxAfr1|scaffold_82273 (4949-5174) | |
| 486-678, gnl|mm7|chr4 (117807350-117807121) | |
| 486-678, gnl|Mm7|chr4 (117807152-117807344) | |
| 486-678, gnl|monDom2|scaffold_87 (149362-149162) | |
| 486-678, gnl|panTro1|chr1 (44479384-44479616) | |
| 486-678, gnl|rheMac2|chr1 (46272389-46272620) | |
| 486-678, gnl|rn3|chr5 (138916188-138915959) | |
| 486-678, gnl|tetNig1|chr15 (5712261-5712456) | |
| 486-678, gnl|xenTro1|scaffold_1 (5581014-5581228) | |
| 818-923, gnl|bosTau2|chr3 (71729751-71729646) | |
| 818-923, gnl|canFam2|chr15 (19813691-19813542) | |
| 818-923, gnl|danRer3|chr2 (9723558-9723422) | |
| 818-923, gnl|dasNov1|scaffold_791 (78432-78582) | |
| 818-923, gnl|echTel1|scaffold_280394 (4200-4045) | |
| 818-923, gnl|fr1|chrUn (264249526-264249390) | |
| 818-923, gnl|galGal2|chr8 (19985493-19985644) | |
| 818-923, gnl|hg17|chr1 (43499302-43499453) | |
| 818-923, gnl|Hg17|chr1 (43499410-43499305) | |
| 818-923, gnl|loxAfr1|scaffold_82273 (4310-4460) | |
| 818-923, gnl|mm7|chr4 (117807959-117807813) | |
| 818-923, gnl|Mm7|chr4 (117807849-117807954) | |
| 818-923, gnl|monDom2|scaffold_87 (149862-149712) | |
| 818-923, gnl|oryCun1|scaffold_208417 (33682-33533) | |
| 818-923, gnl|panTro1|chr1 (44478740-44478891) | |
| 818-923, gnl|rheMac2|chr1 (46271745-46271896) | |
| 818-923, gnl|rn3|chr5 (138916803-138916654) | |
| 818-923, gnl|tetNig1|chr15 (5711682-5711818) | |
| 818-923, gnl|xenTro1|scaffold_1 (5576273-5576436) | |
| 1061-1776, gnl|bosTau2|chr3 (71729258-71728525) | |
| 1061-1776, gnl|Hg17|chr1 (43498900-43498166) | |
| 1061-1776, gnl|Mm7|chr4 (117808338-117809052) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-244, gnl|bosTau2|chr3 (71731121-71730913) | |
| 51-244, gnl|Hg17|chr1 (43500744-43500555) | |
| 325-427, gnl|bosTau2|chr3 (71733311-71733209) | |
| 325-427, gnl|canFam2|chr15 (19810186-19810068) | |
| 325-427, gnl|echTel1|scaffold_280394 (561-444) | |
| 325-427, gnl|hg17|chr1 (43502660-43502782) | |
| 325-427, gnl|Hg17|chr1 (43502785-43502679) | |
| 325-427, gnl|loxAfr1|scaffold_82273 (8120-8239) | |
| 325-427, gnl|mm7|chr4 (117804675-117804558) | |
| 325-427, gnl|Mm7|chr4 (117804553-117804654) | |
| 325-427, gnl|monDom2|scaffold_87 (147164-147010) | |
| 325-427, gnl|panTro1|chr1 (44482098-44482220) | |
| 325-427, gnl|rheMac2|chr1 (46275095-46275217) | |
| 325-427, gnl|rn3|chr5 (138913197-138913080) | |
| 486-678, gnl|bosTau2|chr3 (71730515-71730323) | |
| 486-678, gnl|canFam2|chr15 (19813021-19812790) | |
| 486-678, gnl|danRer3|chr2 (9713635-9713428) | |
| 486-678, gnl|dasNov1|scaffold_205677 (309-96) | |
| 486-678, gnl|echTel1|scaffold_280394 (3576-3345) | |
| 486-678, gnl|fr1|chrUn (264248927-264248704) | |
| 486-678, gnl|galGal2|chr8 (19986414-19986633) | |
| 486-678, gnl|hg17|chr1 (43499946-43500178) | |
| 486-678, gnl|Hg17|chr1 (43500142-43499950) | |
| 486-678, gnl|loxAfr1|scaffold_82273 (4949-5174) | |
| 486-678, gnl|mm7|chr4 (117807350-117807121) | |
| 486-678, gnl|Mm7|chr4 (117807152-117807344) | |
| 486-678, gnl|monDom2|scaffold_87 (149362-149162) | |
| 486-678, gnl|panTro1|chr1 (44479384-44479616) | |
| 486-678, gnl|rheMac2|chr1 (46272389-46272620) | |
| 486-678, gnl|rn3|chr5 (138916188-138915959) | |
| 486-678, gnl|tetNig1|chr15 (5712261-5712456) | |
| 486-678, gnl|xenTro1|scaffold_1 (5581014-5581228) | |
| 818-923, gnl|bosTau2|chr3 (71729751-71729646) | |
| 818-923, gnl|canFam2|chr15 (19813691-19813542) | |
| 818-923, gnl|danRer3|chr2 (9723558-9723422) | |
| 818-923, gnl|dasNov1|scaffold_791 (78432-78582) | |
| 818-923, gnl|echTel1|scaffold_280394 (4200-4045) | |
| 818-923, gnl|fr1|chrUn (264249526-264249390) | |
| 818-923, gnl|galGal2|chr8 (19985493-19985644) | |
| 818-923, gnl|hg17|chr1 (43499302-43499453) | |
| 818-923, gnl|Hg17|chr1 (43499410-43499305) | |
| 818-923, gnl|loxAfr1|scaffold_82273 (4310-4460) | |
| 818-923, gnl|mm7|chr4 (117807959-117807813) | |
| 818-923, gnl|Mm7|chr4 (117807849-117807954) | |
| 818-923, gnl|monDom2|scaffold_87 (149862-149712) | |
| 818-923, gnl|oryCun1|scaffold_208417 (33682-33533) | |
| 818-923, gnl|panTro1|chr1 (44478740-44478891) | |
| 818-923, gnl|rheMac2|chr1 (46271745-46271896) | |
| 818-923, gnl|rn3|chr5 (138916803-138916654) | |
| 818-923, gnl|tetNig1|chr15 (5711682-5711818) | |
| 818-923, gnl|xenTro1|scaffold_1 (5576273-5576436) | |
| 1061-1776, gnl|bosTau2|chr3 (71729258-71728525) | |
| 1061-1776, gnl|Hg17|chr1 (43498900-43498166) | |
| 1061-1776, gnl|Mm7|chr4 (117808338-117809052) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eep (0.245128) | |
| jca (0.22792) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| fce (0.271592) | |
| pla (0.267344) | |
| eep (0.245128) | |
| jca (0.22792) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |