Non-Coding RNA Search

Ss1.1-Tes1-TES01A080016.5

Sequence:


               
               GCCCGCGGCGGCCTGGCCAGGCGGTACAGCCCGCCCGCTGGAGCCCGACCCAGAAGACTT
GAGAGGCCAAACTACGCCGGATGGGGCCCTGATCCAGAGTGCACCATAGCCCAGTCCCGC
GGACCTTCTCCACCTCGAGAGTCTGAAGCGCGGCCGCCCTGGGGTGGGTGTACGTCCAGG
CGGGGGCTGAACCCTCTGAGTGACCTTGGCAGGACCGTTCTAGCTCGGCTGCCACCACGC
GCAGATGTTTTCAAGTCAGCAAACATTTACTGAGCACCTACTGTGTACAAGGAGTGCTCG
TTCCAAGCACTGCAGCGCCTGCAACAAGTGCGTGTGCGGCTTCGACCACCACTGCAAGTG
GCTCAACAACTGGCTCCTCGCTAGAGCATCCCCATCCTTTCTACACAGTGTGGCATCTGC
CTTACTGGGTGTCCTGCTCCTCGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGT
CAACCCCATGCGGCTGCGTACCAACCGCCACTTCGAAGTCCTGAAGAATCACACAGATGT
GTGGTTCATGTTCCTGCCTGCTGCCCCTGTGAAGACCCAGGCTCCTGCCATCCTGGCTCT
GGCTGCCCTACTCATCCTTCTGGGCCTGCTCTCCACAGCTTTGCTCGGCCACCTGCTCTG
TTTCCACATTTATCTCATGTGGCACAAGCTCACCACCTATGAGTACATTGTGCAGCATCG
TCCGCCACAGGAGGCAAAGGGGTCCCACAGGGAGCTCGAATCATGTCCCCCCAAGATGCG
GCCCATTCAGGATACAGAGTTCTACATGCGGACCTTCGGTCATGTGCGCCCAGAGCCCCC
TGGCCAGGCCAGGCTTGCCGCAGTGAATGCCAACCCCTCCGGGTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCGGCGGCCTGGCCAGGCGGTACAGCCCGCCCGCTGGAGCCCGACCCAGAAGACTT
GAGAGGCCAAACTACGCCGGATGGGGCCCTGATCCAGAGTGCACCATAGCCCAGTCCCGC
GGACCTTCTCCACCTCGAGAGTCTGAAGCGCGGCCGCCCTGGGGTGGGTGTACGTCCAGG
CGGGGGCTGAACCCTCTGAGTGACCTTGGCAGGACCGTTCTAGCTCGGCTGCCACCACGC
GCAGATGTTTTCAAGTCAGCAAACATTTACTGAGCACCTACTGTGTACAAGGAGTGCTCG
TTCCAAGCACTGCAGCGCCTGCAACAAGTGCGTGTGCGGCTTCGACCACCACTGCAAGTG
GCTCAACAACTGGCTCCTCGCTAGAGCATCCCCATCCTTTCTACACAGTGTGGCATCTGC
CTTACTGGGTGTCCTGCTCCTCGTGCTGGTGGCCACTTATGTCTTTGTGGAGTTCTTTGT
CAACCCCATGCGGCTGCGTACCAACCGCCACTTCGAAGTCCTGAAGAATCACACAGATGT
GTGGTTCATGTTCCTGCCTGCTGCCCCTGTGAAGACCCAGGCTCCTGCCATCCTGGCTCT
GGCTGCCCTACTCATCCTTCTGGGCCTGCTCTCCACAGCTTTGCTCGGCCACCTGCTCTG
TTTCCACATTTATCTCATGTGGCACAAGCTCACCACCTATGAGTACATTGTGCAGCATCG
TCCGCCACAGGAGGCAAAGGGGTCCCACAGGGAGCTCGAATCATGTCCCCCCAAGATGCG
GCCCATTCAGGATACAGAGTTCTACATGCGGACCTTCGGTCATGTGCGCCCAGAGCCCCC
TGGCCAGGCCAGGCTTGCCGCAGTGAATGCCAACCCCTCCGGGTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7145113|gb|AAB86591.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7145113|gb|AAB86591.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               557-677, - strand, RNAz p=0.909623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-677, - strand, RNAz p=0.909623

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-247, gnl|bosTau2|chr18 (28593366-28593111)
               

               
               1-247, gnl|canFam2|chr5 (84994091-84993750)
               

               
               1-247, gnl|dasNov1|scaffold_52275 (35292-34933)
               

               
               1-247, gnl|hg17|chr16 (66007568-66007967)
               

               
               1-247, gnl|Hg17|chr16 (66007863-66007572)
               

               
               1-247, gnl|hg17|chr3 (197638257-197638445)
               

               
               1-247, gnl|mm7|chr8 (104095442-104095797)
               

               
               1-247, gnl|Mm7|chr8 (104095693-104095446)
               

               
               1-247, gnl|monDom2|scaffold_23 (19399092-19398674)
               

               
               1-247, gnl|panTro1|chr18 (60268936-60269347)
               

               
               1-247, gnl|panTro1|chr2 (201811946-201812134)
               

               
               1-247, gnl|rheMac2|chr2 (189014012-189013820)
               

               
               1-247, gnl|rheMac2|chr20 (65717705-65718092)
               

               
               1-247, gnl|rn3|chr19 (35319034-35319389)
               


               
               517-677, gnl|bosTau2|chr18 (28577216-28577056)
               

               
               517-677, gnl|Hg17|chr16 (65990137-65989977)
               

               
               517-677, gnl|Mm7|chr8 (104075170-104075010)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr18 (28593366-28593111)
               

               
               1-247, gnl|canFam2|chr5 (84994091-84993750)
               

               
               1-247, gnl|dasNov1|scaffold_52275 (35292-34933)
               

               
               1-247, gnl|hg17|chr16 (66007568-66007967)
               

               
               1-247, gnl|Hg17|chr16 (66007863-66007572)
               

               
               1-247, gnl|hg17|chr3 (197638257-197638445)
               

               
               1-247, gnl|mm7|chr8 (104095442-104095797)
               

               
               1-247, gnl|Mm7|chr8 (104095693-104095446)
               

               
               1-247, gnl|monDom2|scaffold_23 (19399092-19398674)
               

               
               1-247, gnl|panTro1|chr18 (60268936-60269347)
               

               
               1-247, gnl|panTro1|chr2 (201811946-201812134)
               

               
               1-247, gnl|rheMac2|chr2 (189014012-189013820)
               

               
               1-247, gnl|rheMac2|chr20 (65717705-65718092)
               

               
               1-247, gnl|rn3|chr19 (35319034-35319389)
               


               
               517-677, gnl|bosTau2|chr18 (28577216-28577056)
               

               
               517-677, gnl|Hg17|chr16 (65990137-65989977)
               

               
               517-677, gnl|Mm7|chr8 (104075170-104075010)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-247, gnl\|bosTau2\|chr18 (28593366-28593111)
	1-247, gnl\|canFam2\|chr5 (84994091-84993750)
	1-247, gnl\|dasNov1\|scaffold_52275 (35292-34933)
	1-247, gnl\|hg17\|chr16 (66007568-66007967)
	1-247, gnl\|Hg17\|chr16 (66007863-66007572)
	1-247, gnl\|hg17\|chr3 (197638257-197638445)
	1-247, gnl\|mm7\|chr8 (104095442-104095797)
	1-247, gnl\|Mm7\|chr8 (104095693-104095446)
	1-247, gnl\|monDom2\|scaffold_23 (19399092-19398674)
	1-247, gnl\|panTro1\|chr18 (60268936-60269347)
	1-247, gnl\|panTro1\|chr2 (201811946-201812134)
	1-247, gnl\|rheMac2\|chr2 (189014012-189013820)
	1-247, gnl\|rheMac2\|chr20 (65717705-65718092)
	1-247, gnl\|rn3\|chr19 (35319034-35319389)

	517-677, gnl\|bosTau2\|chr18 (28577216-28577056)
	517-677, gnl\|Hg17\|chr16 (65990137-65989977)
	517-677, gnl\|Mm7\|chr8 (104075170-104075010)