Ss1.1-Tes1-TES01A080046.5.5
|
GTTGCTGAGCCAAGTGGGAGACAGCCTTTCCTAAGGTTGAGAGAGACCAGCAGACAGCCA
TCATGGCGGGGAAGCCCATTCTTCACTATTTCAATGGCCGAGGCAGAATGGAGTGTATCC
GGTGGCTCCTGGCTGCAGCTGGAGTGGAGTTCGAAGAGAAATTTATAGAAAATCCAAACG
ACTTGAATAAGTTAACAAATGATGGGAGTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGA
TTGACGGGATGAAGCTGGTGCAGACCAGGGCCATCCTCAACTACATCGCCACCAAGTACA
ACCTCTACGGGAAGGACGCCAAGGAGAGAGCCCTGATTGATATGTATACAGAAGGTGTGG
CAGATTTGGGTGAAATGATCTTGCTGTTGCCACTGTGCCCACCCAATGAAAAAGATGCCA
AGGTGGCCTCGATCAAAGAAAAATCGACAAACCGTTATCTTCCTGCATTTGAAAAAGTGT
TGAAGAGCCATGGACAAGACTACCTTGTGGGCAACAAGCTGAGCAGGGCTGACATCCAGC
TGGTTGAACTTCTCTACTACGTGGAAGAGCTGGACCCCAGCCTGCTGGCCAACTTCCCTC
TGCTGAAGGCCCTGAAAACCAGAGTCAGCAACCTCCCCACGGTGAAGAAGTTTCTGCAGC
CTGGCAGCCAGAGGAAGCCTCCCACTGACGAGGAAAGTTTAGAAAAAGCAAGGAGGATTT
TCAAGTTTAAATAAAGCAGGCAGGGCCACCCAGGACCCTCTTCTGATTTTCTAGCAATGA
AGTGTTTACCTAAATGTAGATCCTGGATGATGTGAGACTAATAAACTAGTCTGAATTTTT
GTGGTTGTTAAATAATGAAGTTCCTATGAGTCTACTATCTTAAAATTTATTCTTTTTCAT
GATGATCCAAAGAAAATACGTTTGTCAATCTCTTAGCCTGTGTCAGTTTTGGAATGACGT
TTAATGATAATTAAATCAAGTAAAAATTAAATAAAAATGGAAATGTTGATTATGTAGGCC
TCATGATCTTTTCTGGGAATTATCACATAACACCTGTCATAAGCCTGTCAAAGAATTAGG
TGTAGAAATTCAAATCTGACAATTGTAGCTTCTGCCTTTCTGCTGTCAATGAAAATAATG
AATAAACAATCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTGCTGAGCCAAGTGGGAGACAGCCTTTCCTAAGGTTGAGAGAGACCAGCAGACAGCCA
TCATGGCGGGGAAGCCCATTCTTCACTATTTCAATGGCCGAGGCAGAATGGAGTGTATCC
GGTGGCTCCTGGCTGCAGCTGGAGTGGAGTTCGAAGAGAAATTTATAGAAAATCCAAACG
ACTTGAATAAGTTAACAAATGATGGGAGTTTGCTGTTCCAGCAAGTGCCCATGGTTGAGA
TTGACGGGATGAAGCTGGTGCAGACCAGGGCCATCCTCAACTACATCGCCACCAAGTACA
ACCTCTACGGGAAGGACGCCAAGGAGAGAGCCCTGATTGATATGTATACAGAAGGTGTGG
CAGATTTGGGTGAAATGATCTTGCTGTTGCCACTGTGCCCACCCAATGAAAAAGATGCCA
AGGTGGCCTCGATCAAAGAAAAATCGACAAACCGTTATCTTCCTGCATTTGAAAAAGTGT
TGAAGAGCCATGGACAAGACTACCTTGTGGGCAACAAGCTGAGCAGGGCTGACATCCAGC
TGGTTGAACTTCTCTACTACGTGGAAGAGCTGGACCCCAGCCTGCTGGCCAACTTCCCTC
TGCTGAAGGCCCTGAAAACCAGAGTCAGCAACCTCCCCACGGTGAAGAAGTTTCTGCAGC
CTGGCAGCCAGAGGAAGCCTCCCACTGACGAGGAAAGTTTAGAAAAAGCAAGGAGGATTT
TCAAGTTTAAATAAAGCAGGCAGGGCCACCCAGGACCCTCTTCTGATTTTCTAGCAATGA
AGTGTTTACCTAAATGTAGATCCTGGATGATGTGAGACTAATAAACTAGTCTGAATTTTT
GTGGTTGTTAAATAATGAAGTTCCTATGAGTCTACTATCTTAAAATTTATTCTTTTTCAT
GATGATCCAAAGAAAATACGTTTGTCAATCTCTTAGCCTGTGTCAGTTTTGGAATGACGT
TTAATGATAATTAAATCAAGTAAAAATTAAATAAAAATGGAAATGTTGATTATGTAGGCC
TCATGATCTTTTCTGGGAATTATCACATAACACCTGTCATAAGCCTGTCAAAGAATTAGG
TGTAGAAATTCAAATCTGACAATTGTAGCTTCTGCCTTTCTGCTGTCAATGAAAATAATG
AATAAACAATCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
32-149, gnl|bosTau2|chr23 (22780657-22780774) |
|
32-149, gnl|canFam2|chr12 (23372862-23372990) |
|
32-149, gnl|dasNov1|scaffold_33596 (10675-10541) |
|
32-149, gnl|echTel1|scaffold_166587 (3748-3616) |
|
32-149, gnl|galGal2|chr3 (86691019-86690919) |
|
32-149, gnl|hg17|chr6 (52842971-52843105) |
|
32-149, gnl|Hg17|chr6 (52730736-52730618) |
|
32-149, gnl|loxAfr1|scaffold_20329 (2283-2417) |
|
32-149, gnl|mm7|chr1 (21444565-21444430) |
|
32-149, gnl|Mm7|chr1 (21444419-21444532) |
|
32-149, gnl|oryCun1|scaffold_174269 (41243-41110) |
|
32-149, gnl|panTro1|chr5 (53857597-53857731) |
|
32-149, gnl|rheMac2|chr4 (52493205-52493336) |
|
32-149, gnl|rn3|chr9 (20113385-20113518) |
|
32-149, gnl|tetNig1|chr17 (4503271-4503164) |
| |
|
196-335, gnl|bosTau2|chr23 (22814358-22814497) |
|
196-335, gnl|Hg17|chr6 (52727838-52727699) |
|
196-335, gnl|Mm7|chr9 (78412033-78411894) |
| |
|
604-1101, gnl|bosTau2|chr23 (22751125-22751610) |
|
604-1101, gnl|Hg17|chr6 (52869690-52869208) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
32-149, gnl|bosTau2|chr23 (22780657-22780774) |
|
32-149, gnl|canFam2|chr12 (23372862-23372990) |
|
32-149, gnl|dasNov1|scaffold_33596 (10675-10541) |
|
32-149, gnl|echTel1|scaffold_166587 (3748-3616) |
|
32-149, gnl|galGal2|chr3 (86691019-86690919) |
|
32-149, gnl|hg17|chr6 (52842971-52843105) |
|
32-149, gnl|Hg17|chr6 (52730736-52730618) |
|
32-149, gnl|loxAfr1|scaffold_20329 (2283-2417) |
|
32-149, gnl|mm7|chr1 (21444565-21444430) |
|
32-149, gnl|Mm7|chr1 (21444419-21444532) |
|
32-149, gnl|oryCun1|scaffold_174269 (41243-41110) |
|
32-149, gnl|panTro1|chr5 (53857597-53857731) |
|
32-149, gnl|rheMac2|chr4 (52493205-52493336) |
|
32-149, gnl|rn3|chr9 (20113385-20113518) |
|
32-149, gnl|tetNig1|chr17 (4503271-4503164) |
| |
|
196-335, gnl|bosTau2|chr23 (22814358-22814497) |
|
196-335, gnl|Hg17|chr6 (52727838-52727699) |
|
196-335, gnl|Mm7|chr9 (78412033-78411894) |
| |
|
604-1101, gnl|bosTau2|chr23 (22751125-22751610) |
|
604-1101, gnl|Hg17|chr6 (52869690-52869208) |
|
duo (8.81286) |
|
cje (7.10509) |
|
lun (6.62152) |
|
sin (4.37369) |
|
cov (3.56812) |
|
cli (2.5978) |
|
sug (2.03666) |
|
jej (1.78059) |
|
ova (1.29132) |
|
tes (0.831255) |
|
bla (0.746083) |
|
nje (0.49776) |
|
cag (0.453583) |
|
col (0.390016) |
|
cte (0.29274) |
|
pla (0.267344) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
med (0.116252) |
|
duo (8.81286) |
|
cje (7.10509) |
|
lun (6.62152) |
|
sin (4.37369) |
|
cov (3.56812) |
|
cli (2.5978) |
|
sug (2.03666) |
|
jej (1.78059) |
|
ova (1.29132) |
|
tes (0.831255) |
|
bla (0.746083) |
|
nje (0.49776) |
|
cag (0.453583) |
|
col (0.390016) |
|
cte (0.29274) |
|
pla (0.267344) |
|
sto (0.179824) |
|
ill (0.175593) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
med (0.116252) |
