Ss1.1-Tes1-TES01A080083.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGAGCGCGCTGAGTTTAGAAGGCAGGCGTCGACATGAGCTCGGTGCCAGCGTTCCTGA GCGCCGCGGACGTGCAGGACCACCTCCGCAGCTCCAGCCTCCTCATCCCGCCTCTGGAGG CGGCCCTGGCCAACTTCTCTAGCGGCCCCGACGGAGGGGTCGTGCAGCCGGTGCGCACCG TCGTGCCGGTGGCCAAGCACAGCGGTTTCCTGGGGGTCATGCCCGCCTACAGTGCAGCAG AGGATGCGCTGACCACCAAGTTGGTCACCTTCTATGAGGGCCACCGCTCCACCTCCACTG TCCCCTCCCATCAGGCCACTGTGCTTCTCTTTGAGCCGAGCAATGGCTCTCTTCTGGCGG TCATGGATGGAAATGTTATAACTGCAAAAAGAACTGCTGCAGTATCTGCCATTGCTACCA AGTTTTTGAAACCCCCCAACAGTGAAGTGTTGTGTATCCTTGGAGCTGGGGTCCAGGCTT ACAGCCACTATGAGGTCTTCACAGAGCAGTTCTCCTTTAAGGAGGTGAGGATATGGAACC GCACCAAAGAAAACGCGGAGAAGTTTGCGAACACAGTGCAAGGCGAGGTTGAGGTCTGTC CATCGGTCCAGGAGGCTGTGGCAGGAGCAGATGTGATCATCACGGTCACCATGGCAACAG AGCCCATTTTGTTTGGCGAATGGGTGAAGCCTGGGGCTCACATCAATGCCATTGGCGCCA GCAGACCCGACTGGAGAGAGCTGGATGACGAGCTCATGAAACAGGCTGTGCTGTACGTGG ACTCCCGGGAGGCCGCCGTGAAAGAGTCTGGAGATGTCCTCTTGTCCGGGGCCGAGATCT TTGCGGAGCTGGGAGAAGTGGTGAAGGGCGTGAAGCCAGCCCACTGCGAGAAGACGACAG TATTCAAGTCTTTGGGAATGGCGGTGGAAGACTTGGTTGCAGCCAAACTAGTGTACGAGT CCTGGTCATCTGGTAAATAAAACAAAGGAGCTTTGTGCTGAGTGGATGCTACAGCTGAAG GGGAATGAACACTAGTTGTCTCATAATCTCTCCGTCAAATGAGAGCACCCAGTGCTCAGT GATCTCTAGTTTTGTGCTTATCATGTCTTACCTTAAATAATGAGATCCCCTCTTGTGTTT GTAGTTGGAAGGCAAAACTAAACGGCCATTCTTCTGTTCCACCAGATTAAACTAGCATTC CCTTCCCCCTGTGTTTCACTGCCTTTTGTATTGCCTTGAAATAAAGCTTTTCCAGTTCTG CAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGAGCGCGCTGAGTTTAGAAGGCAGGCGTCGACATGAGCTCGGTGCCAGCGTTCCTGA GCGCCGCGGACGTGCAGGACCACCTCCGCAGCTCCAGCCTCCTCATCCCGCCTCTGGAGG CGGCCCTGGCCAACTTCTCTAGCGGCCCCGACGGAGGGGTCGTGCAGCCGGTGCGCACCG TCGTGCCGGTGGCCAAGCACAGCGGTTTCCTGGGGGTCATGCCCGCCTACAGTGCAGCAG AGGATGCGCTGACCACCAAGTTGGTCACCTTCTATGAGGGCCACCGCTCCACCTCCACTG TCCCCTCCCATCAGGCCACTGTGCTTCTCTTTGAGCCGAGCAATGGCTCTCTTCTGGCGG TCATGGATGGAAATGTTATAACTGCAAAAAGAACTGCTGCAGTATCTGCCATTGCTACCA AGTTTTTGAAACCCCCCAACAGTGAAGTGTTGTGTATCCTTGGAGCTGGGGTCCAGGCTT ACAGCCACTATGAGGTCTTCACAGAGCAGTTCTCCTTTAAGGAGGTGAGGATATGGAACC GCACCAAAGAAAACGCGGAGAAGTTTGCGAACACAGTGCAAGGCGAGGTTGAGGTCTGTC CATCGGTCCAGGAGGCTGTGGCAGGAGCAGATGTGATCATCACGGTCACCATGGCAACAG AGCCCATTTTGTTTGGCGAATGGGTGAAGCCTGGGGCTCACATCAATGCCATTGGCGCCA GCAGACCCGACTGGAGAGAGCTGGATGACGAGCTCATGAAACAGGCTGTGCTGTACGTGG ACTCCCGGGAGGCCGCCGTGAAAGAGTCTGGAGATGTCCTCTTGTCCGGGGCCGAGATCT TTGCGGAGCTGGGAGAAGTGGTGAAGGGCGTGAAGCCAGCCCACTGCGAGAAGACGACAG TATTCAAGTCTTTGGGAATGGCGGTGGAAGACTTGGTTGCAGCCAAACTAGTGTACGAGT CCTGGTCATCTGGTAAATAAAACAAAGGAGCTTTGTGCTGAGTGGATGCTACAGCTGAAG GGGAATGAACACTAGTTGTCTCATAATCTCTCCGTCAAATGAGAGCACCCAGTGCTCAGT GATCTCTAGTTTTGTGCTTATCATGTCTTACCTTAAATAATGAGATCCCCTCTTGTGTTT GTAGTTGGAAGGCAAAACTAAACGGCCATTCTTCTGTTCCACCAGATTAAACTAGCATTC CCTTCCCCCTGTGTTTCACTGCCTTTTGTATTGCCTTGAAATAAAGCTTTTCCAGTTCTG CAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 510-614, - strand, RNAz p=0.708113 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 510-614, - strand, RNAz p=0.708113 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 4-205, gnl|bosTau2|chr25 (17670473-17670272) | |
| 4-205, gnl|Hg17|chr16 (21197107-21196904) | |
| 4-205, gnl|Mm7|chr7 (116124235-116124038) | |
| 207-361, gnl|bosTau2|chr25 (17669777-17669623) | |
| 207-361, gnl|canFam2|chr6 (27215648-27215401) | |
| 207-361, gnl|dasNov1|scaffold_234237 (631-879) | |
| 207-361, gnl|echTel1|scaffold_316485 (39181-39434) | |
| 207-361, gnl|hg17|chr16 (21196189-21196436) | |
| 207-361, gnl|Hg17|chr16 (21196405-21196251) | |
| 207-361, gnl|loxAfr1|scaffold_36343 (4723-4968) | |
| 207-361, gnl|mm7|chr7 (116123264-116123579) | |
| 207-361, gnl|Mm7|chr7 (116123509-116123358) | |
| 207-361, gnl|monDom2|scaffold_19 (41670670-41670954) | |
| 207-361, gnl|oryCun1|scaffold_199406 (32986-32740) | |
| 207-361, gnl|panTro1|chr18 (21624283-21624530) | |
| 207-361, gnl|rheMac2|chr20 (20152879-20153126) | |
| 207-361, gnl|tetNig1|chr2 (3989356-3989578) | |
| 510-708, gnl|bosTau2|chr25 (17654155-17653957) | |
| 510-708, gnl|canFam2|chr6 (27224697-27224464) | |
| 510-708, gnl|danRer3|chr19 (54877906-54878126) | |
| 510-708, gnl|dasNov1|scaffold_30891 (6115-6344) | |
| 510-708, gnl|echTel1|scaffold_281011 (43348-43577) | |
| 510-708, gnl|fr1|chrUn (189851202-189850999) | |
| 510-708, gnl|galGal2|chrUn (39539753-39539961) | |
| 510-708, gnl|hg17|chr16 (21186366-21186595) | |
| 510-708, gnl|Hg17|chr16 (21186574-21186376) | |
| 510-708, gnl|loxAfr1|scaffold_10658 (64999-65228) | |
| 510-708, gnl|mm7|chr7 (116117603-116117823) | |
| 510-708, gnl|Mm7|chr7 (116117805-116117608) | |
| 510-708, gnl|monDom2|scaffold_19 (41664796-41665038) | |
| 510-708, gnl|oryCun1|scaffold_199406 (42292-42063) | |
| 510-708, gnl|panTro1|chr18 (21614478-21614707) | |
| 510-708, gnl|rheMac2|chr20 (20143133-20143362) | |
| 510-708, gnl|tetNig1|chr2 (3988615-3988809) | |
| 510-708, gnl|xenTro1|scaffold_6 (3192213-3191985) | |
| 915-1262, gnl|bosTau2|chr25 (17647321-17646965) | |
| 915-1262, gnl|Hg17|chr16 (21177668-21177343) | |
| 915-1262, gnl|Mm7|chr7 (116108982-116108666) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-205, gnl|bosTau2|chr25 (17670473-17670272) | |
| 4-205, gnl|Hg17|chr16 (21197107-21196904) | |
| 4-205, gnl|Mm7|chr7 (116124235-116124038) | |
| 207-361, gnl|bosTau2|chr25 (17669777-17669623) | |
| 207-361, gnl|canFam2|chr6 (27215648-27215401) | |
| 207-361, gnl|dasNov1|scaffold_234237 (631-879) | |
| 207-361, gnl|echTel1|scaffold_316485 (39181-39434) | |
| 207-361, gnl|hg17|chr16 (21196189-21196436) | |
| 207-361, gnl|Hg17|chr16 (21196405-21196251) | |
| 207-361, gnl|loxAfr1|scaffold_36343 (4723-4968) | |
| 207-361, gnl|mm7|chr7 (116123264-116123579) | |
| 207-361, gnl|Mm7|chr7 (116123509-116123358) | |
| 207-361, gnl|monDom2|scaffold_19 (41670670-41670954) | |
| 207-361, gnl|oryCun1|scaffold_199406 (32986-32740) | |
| 207-361, gnl|panTro1|chr18 (21624283-21624530) | |
| 207-361, gnl|rheMac2|chr20 (20152879-20153126) | |
| 207-361, gnl|tetNig1|chr2 (3989356-3989578) | |
| 510-708, gnl|bosTau2|chr25 (17654155-17653957) | |
| 510-708, gnl|canFam2|chr6 (27224697-27224464) | |
| 510-708, gnl|danRer3|chr19 (54877906-54878126) | |
| 510-708, gnl|dasNov1|scaffold_30891 (6115-6344) | |
| 510-708, gnl|echTel1|scaffold_281011 (43348-43577) | |
| 510-708, gnl|fr1|chrUn (189851202-189850999) | |
| 510-708, gnl|galGal2|chrUn (39539753-39539961) | |
| 510-708, gnl|hg17|chr16 (21186366-21186595) | |
| 510-708, gnl|Hg17|chr16 (21186574-21186376) | |
| 510-708, gnl|loxAfr1|scaffold_10658 (64999-65228) | |
| 510-708, gnl|mm7|chr7 (116117603-116117823) | |
| 510-708, gnl|Mm7|chr7 (116117805-116117608) | |
| 510-708, gnl|monDom2|scaffold_19 (41664796-41665038) | |
| 510-708, gnl|oryCun1|scaffold_199406 (42292-42063) | |
| 510-708, gnl|panTro1|chr18 (21614478-21614707) | |
| 510-708, gnl|rheMac2|chr20 (20143133-20143362) | |
| 510-708, gnl|tetNig1|chr2 (3988615-3988809) | |
| 510-708, gnl|xenTro1|scaffold_6 (3192213-3191985) | |
| 915-1262, gnl|bosTau2|chr25 (17647321-17646965) | |
| 915-1262, gnl|Hg17|chr16 (21177668-21177343) | |
| 915-1262, gnl|Mm7|chr7 (116108982-116108666) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fcc (0.791139) | |
| pgl (0.35545) | |
| cbr (0.255951) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.791139) | |
| pgl (0.35545) | |
| cbr (0.255951) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) |