Non-Coding RNA Search

Ss1.1-Tes1-TES01A100013.5

Sequence:


               
               CCAGCGGCAGCCGCCGGAGCCGCCGCCACAGCGGGGACGGGGAGCCCCCGGGGTCGCCGC
CGCCGCCGCCGCCGCCGCCCGCGGTCACCTACCCGGACTGGATCGGCCAGAGTTACTCCG
AGGTGATGAGCCTCAACGAGCACTCGATGCAAGCGCTGTCTTGGCGCAAGCTCTACTTGA
GCCGCGCCAAGCTCAAAGCCTCCAGCCGGACCTCAGCTCTGCTCTCCGGCTTCGCCATGG
TGGCCATGGTGGAGGTGCAGCTGGACACTGACCACGACTACCCTCCGGGGCTGCTGATTG
CCTTCAGTGCCTGCACCACGGTGCTTGTGGCCGTGCATCTGTTTGCGCTGATGATCAGCA
CCTGCATCCTGCCCAACATCGAGGCGGTGAGCAATGTGCACAACCTCAACTCGGTCAAGG
AGTCACCCCACGAGCGCATGCACCGCCACATCGAGCTGGCCTGGGCCTTCTCCACTGTCA
TCGGTACACTGCTCTTCCTGGCAGAGGTTGTGCTGCTCTGCTGGGTCAAGTTCTTGCCCC
TCAAGAAGCAGCCGGGCCAGCCACGGCCCACCAGCAAGCCCCCGCCCAGCAGCGAGGCCA
CCAACGTCAGCAGCAGCAGCCCTGGTGGCATCACCCCGGGCCAGGCTGCGGCCATCGCCT
CCACCACCATCATGGTCCCCTTTGGCCTGATCTTTATCGTCTTCGCCGTCCACTTCTACC
GCTCACTAGTCAGCCACAAGACGGACCGACAGTTCCAGGAGCTCAACGAGTTGGCTGAGT
TCGCCCGCCTGCAGGACCAGCTGGACCACAGAGGGGACCACCCCCTGACCCCCGGCAGCC
ACTATGCCTAAGCCCTCCCGGGCTGGGCACTTCAGAGCTTTGGCCTTAACGCCCTTCCGC
ATGACCTTGTCCTGCCCTAGCCTCAAGGACAACCTGTGCAGGGGACTGGGCTTTCATCAG
GGGGCAGAGAGCGAGGGGAAGAGGCTTTTTTTTTTAAGAGAAGTTACTGCACTTTGAAAC
TTTCCTCTAAGAGAATAAGCACTTCCTGTTCTTCCAGCTCCAGGTTCACCTCCTGTTCGG
AGGCCACCGGTGGAAGCCAAAGCAGGGACAAATGCTCCTTTTGTCCCTCCTCCTCCCCCG
TGCCAATGCCATCTGGGTGCCTCCTGTCCTTTCCGTCTTGACCCCACCCCCACCCCATTC
AGCCATCAGGTGTGTGTGTGCGTGCGTGTATGAACACAGAAATATACTCATAAGGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCGGCAGCCGCCGGAGCCGCCGCCACAGCGGGGACGGGGAGCCCCCGGGGTCGCCGC
CGCCGCCGCCGCCGCCGCCCGCGGTCACCTACCCGGACTGGATCGGCCAGAGTTACTCCG
AGGTGATGAGCCTCAACGAGCACTCGATGCAAGCGCTGTCTTGGCGCAAGCTCTACTTGA
GCCGCGCCAAGCTCAAAGCCTCCAGCCGGACCTCAGCTCTGCTCTCCGGCTTCGCCATGG
TGGCCATGGTGGAGGTGCAGCTGGACACTGACCACGACTACCCTCCGGGGCTGCTGATTG
CCTTCAGTGCCTGCACCACGGTGCTTGTGGCCGTGCATCTGTTTGCGCTGATGATCAGCA
CCTGCATCCTGCCCAACATCGAGGCGGTGAGCAATGTGCACAACCTCAACTCGGTCAAGG
AGTCACCCCACGAGCGCATGCACCGCCACATCGAGCTGGCCTGGGCCTTCTCCACTGTCA
TCGGTACACTGCTCTTCCTGGCAGAGGTTGTGCTGCTCTGCTGGGTCAAGTTCTTGCCCC
TCAAGAAGCAGCCGGGCCAGCCACGGCCCACCAGCAAGCCCCCGCCCAGCAGCGAGGCCA
CCAACGTCAGCAGCAGCAGCCCTGGTGGCATCACCCCGGGCCAGGCTGCGGCCATCGCCT
CCACCACCATCATGGTCCCCTTTGGCCTGATCTTTATCGTCTTCGCCGTCCACTTCTACC
GCTCACTAGTCAGCCACAAGACGGACCGACAGTTCCAGGAGCTCAACGAGTTGGCTGAGT
TCGCCCGCCTGCAGGACCAGCTGGACCACAGAGGGGACCACCCCCTGACCCCCGGCAGCC
ACTATGCCTAAGCCCTCCCGGGCTGGGCACTTCAGAGCTTTGGCCTTAACGCCCTTCCGC
ATGACCTTGTCCTGCCCTAGCCTCAAGGACAACCTGTGCAGGGGACTGGGCTTTCATCAG
GGGGCAGAGAGCGAGGGGAAGAGGCTTTTTTTTTTAAGAGAAGTTACTGCACTTTGAAAC
TTTCCTCTAAGAGAATAAGCACTTCCTGTTCTTCCAGCTCCAGGTTCACCTCCTGTTCGG
AGGCCACCGGTGGAAGCCAAAGCAGGGACAAATGCTCCTTTTGTCCCTCCTCCTCCCCCG
TGCCAATGCCATCTGGGTGCCTCCTGTCCTTTCCGTCTTGACCCCACCCCCACCCCATTC
AGCCATCAGGTGTGTGTGTGCGTGCGTGTATGAACACAGAAATATACTCATAAGGGACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15426546|gb|AAH13386.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15426546|gb|AAH13386.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               444-563, - strand, RNAz p=0.876493
               

               
               1033-1188, - strand, RNAz p=0.997074

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-563, - strand, RNAz p=0.876493
               

               
               1033-1188, - strand, RNAz p=0.997074

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               212-1260, gnl|bosTau2|chr17 (28590463-28591511)
               

               
               212-1260, gnl|Hg17|chr12 (120541643-120542662)
               

               
               212-1260, gnl|Mm7|chr5 (122263268-122264389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-1260, gnl|bosTau2|chr17 (28590463-28591511)
               

               
               212-1260, gnl|Hg17|chr12 (120541643-120542662)
               

               
               212-1260, gnl|Mm7|chr5 (122263268-122264389)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               elu (0.385356)
               

               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               jej (0.197844)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	444-563, - strand, RNAz p=0.876493
	1033-1188, - strand, RNAz p=0.997074

	212-1260, gnl\|bosTau2\|chr17 (28590463-28591511)
	212-1260, gnl\|Hg17\|chr12 (120541643-120542662)
	212-1260, gnl\|Mm7\|chr5 (122263268-122264389)

	elu (0.385356)
	cga (0.279096)
	jca (0.22792)
	jej (0.197844)
	ton (0.1755)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	pla (0.133672)
	ese (0.126502)