Non-Coding RNA Search

Ss1.1-Tes1-TES01A100020.5

Sequence:


               
               CTTTCCCGGCTTGTCTTGTTGTGGTATAATCCTGTGACTGAAGAGGATGTTCGACTTCGA
CATTGCCTTGGCGTGTTCTTTCCCCTCTTTGCTTATGCAAGCAGGAATAACCAGGAATGT
TTTGAAGAAGCCTTTCTTCCAACTCTACAAACACTGGCCAATGCCCCTGGCTCTTCTCCT
TTAGCTGAAATAGATATCACTAATGTTGCCGAGTTACTTGTAGATTTGACGAGACCAAGT
GGATTAAATCCTAAAGCCAAGGATTCCCAAGATTATCAGGCCTTAACAGTTCATGACAAT
CTGGCTATAAAAATTTGCAATGAGATCCTGTCATGTCCATGTTCACCAGAAGTTCGGGTC
TATACTAAAGCCTTGAGTTCGTTAGAGCTCAGTAGTGATCTTGCTAATAAAGATCTTCTG
GTTCTGTTGAATGAGATTCTAGAGCAAGTAAAAGACAGAACGTGCCTGAGAGCTTTGGAG
AAAATCAAGATTCAGCTGGAAAAAGGAAATAAAGAAAATGGTGACCAAGCTGTAGCAGCG
CAGGATGACGGCACAGTCACGACTCTTTTTCAAAGTGAAGAAAAGAATAAAGAAGTGTAT
ATAACTCCTGTCAAAGATGTAAAGGTAACCCGAATGAAATCCACTCAGAAGCAGACTAAC
AGAGGACGAAGAACAGTGACAGCTTCAGCTAGAATGAGCAGGAGACGTCAGACTGAGGCT
GAGACTGACTCTGAAAGTGATCATGAAGTTCCAGAGCCAGAATCAGAAATGAAGATGAGA
TTACCAAGACGAGCCAAAACAGCAGCACTAGAAAAAAGTAAACTTAGCCTTGCACAATTT
CTCAATGAATAGGTGATAGAGATGGAGTCCTTTGAAAAATGTCCATGAAGACTATGTTCA
GTTCTTTTCTTTAATAAAGTTACCCTTGTATGAAAAAAAAAAAAAAAATGGTTCTTGTAG
AATTTTCTGCTTTCTGATCCCACATTGCTTTGGCCTGTATTGAAGCATTAAGACAGTGTG
CTCCACAGACCACCTGCATCAACGGTGGGTTTAATCAGAACCTACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCCCGGCTTGTCTTGTTGTGGTATAATCCTGTGACTGAAGAGGATGTTCGACTTCGA
CATTGCCTTGGCGTGTTCTTTCCCCTCTTTGCTTATGCAAGCAGGAATAACCAGGAATGT
TTTGAAGAAGCCTTTCTTCCAACTCTACAAACACTGGCCAATGCCCCTGGCTCTTCTCCT
TTAGCTGAAATAGATATCACTAATGTTGCCGAGTTACTTGTAGATTTGACGAGACCAAGT
GGATTAAATCCTAAAGCCAAGGATTCCCAAGATTATCAGGCCTTAACAGTTCATGACAAT
CTGGCTATAAAAATTTGCAATGAGATCCTGTCATGTCCATGTTCACCAGAAGTTCGGGTC
TATACTAAAGCCTTGAGTTCGTTAGAGCTCAGTAGTGATCTTGCTAATAAAGATCTTCTG
GTTCTGTTGAATGAGATTCTAGAGCAAGTAAAAGACAGAACGTGCCTGAGAGCTTTGGAG
AAAATCAAGATTCAGCTGGAAAAAGGAAATAAAGAAAATGGTGACCAAGCTGTAGCAGCG
CAGGATGACGGCACAGTCACGACTCTTTTTCAAAGTGAAGAAAAGAATAAAGAAGTGTAT
ATAACTCCTGTCAAAGATGTAAAGGTAACCCGAATGAAATCCACTCAGAAGCAGACTAAC
AGAGGACGAAGAACAGTGACAGCTTCAGCTAGAATGAGCAGGAGACGTCAGACTGAGGCT
GAGACTGACTCTGAAAGTGATCATGAAGTTCCAGAGCCAGAATCAGAAATGAAGATGAGA
TTACCAAGACGAGCCAAAACAGCAGCACTAGAAAAAAGTAAACTTAGCCTTGCACAATTT
CTCAATGAATAGGTGATAGAGATGGAGTCCTTTGAAAAATGTCCATGAAGACTATGTTCA
GTTCTTTTCTTTAATAAAGTTACCCTTGTATGAAAAAAAAAAAAAAAATGGTTCTTGTAG
AATTTTCTGCTTTCTGATCCCACATTGCTTTGGCCTGTATTGAAGCATTAAGACAGTGTG
CTCCACAGACCACCTGCATCAACGGTGGGTTTAATCAGAACCTACTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61832449|ref|XP_589564.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61832449|ref|XP_589564.1|

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               103-280, gnl|bosTau2|chr6 (32413143-32412966)
               

               
               103-280, gnl|Hg17|chr4 (17515517-17515694)
               

               
               103-280, gnl|Mm7|chr5 (45015895-45016072)
               


               
               409-615, gnl|bosTau2|chr28 (8138487-8138284)
               

               
               409-615, gnl|Hg17|chr6 (69530812-69531140)
               


               
               736-1064, gnl|bosTau2|chr6 (32407183-32406841)
               

               
               736-1064, gnl|Hg17|chr4 (17521192-17521542)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-280, gnl|bosTau2|chr6 (32413143-32412966)
               

               
               103-280, gnl|Hg17|chr4 (17515517-17515694)
               

               
               103-280, gnl|Mm7|chr5 (45015895-45016072)
               


               
               409-615, gnl|bosTau2|chr28 (8138487-8138284)
               

               
               409-615, gnl|Hg17|chr6 (69530812-69531140)
               


               
               736-1064, gnl|bosTau2|chr6 (32407183-32406841)
               

               
               736-1064, gnl|Hg17|chr4 (17521192-17521542)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cte (0.87822)
               

               
               sag (0.548145)
               

               
               thg (0.507164)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               che (0.136314)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               sag (0.548145)
               

               
               thg (0.507164)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               che (0.136314)

	103-280, gnl\|bosTau2\|chr6 (32413143-32412966)
	103-280, gnl\|Hg17\|chr4 (17515517-17515694)
	103-280, gnl\|Mm7\|chr5 (45015895-45016072)

	409-615, gnl\|bosTau2\|chr28 (8138487-8138284)
	409-615, gnl\|Hg17\|chr6 (69530812-69531140)

	736-1064, gnl\|bosTau2\|chr6 (32407183-32406841)
	736-1064, gnl\|Hg17\|chr4 (17521192-17521542)

	cte (0.87822)
	sag (0.548145)
	thg (0.507164)
	fty (0.17584)
	spl (0.143184)
	che (0.136314)