Ss1.1-Tes1-TES01A110058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGTGCTGAGCGTCGGCGTGAACCTGGAGGCCTTTTCCCAGGCCATCAGTGCTATCCA GGCGCTGCGCTCCAGCGTGAGCAGGGTGTTCGACTGCCTGAAGGATGGTATGCGCAACAA GGAGACGCTGGAGGGCCGGGAGAAGGCCTTCATTGCGCACTTCCAGGACAACTTGCATTC AGTCAACCGGGACCTCAATGAGCTGGAACGTCTGAGCAACTTGGTGGGCAAGCCTTCGGA GAACCATCCTCTCCATAACAGTGGGCTCCTGAGCCTGGACCCCGTGCAGGACAAAACTCC TCTGTACAGTCAGCTCCTTCAGGCGTACAAGTGGTCGAACAAGTTGCAGTACCACGCAGG ACTGGCGTCTGGCCTTTTGAATCAGCAGTCACTGAAACGCTCTGCTAACCAGATGGGAGT ATCCGCTAAACGTCGACCAAAGGCTCAGCCCACGACCCTTGTCTTGCCGCCTCAATACGT TGACGACGTGATCAGCCGCATTGACAGGATGTTTCCTGAAATGTCCATCCACTTATCCAG GCCCAATGGAACGTCTGCCATGCTTCTGGTGACCTTGGGGAAGGTGCTGAAAGTGATCGT GGTCATGCGGAGCCTGTTCATCGACCGCACGATAGTGAAGGGGTACAACGAAAACGTCTA CACCGAGGACGGCAAGCTTGATATATGGTCCAAATCCAACTATCAAGTATTCCAGAAGGT GACGGACCATGCCACCACTGCCCTGCTCCACTATCAGCTGCCCCAGATGCCAGACGTCGT GGTCCGATCCTTCATGACCTGGTTAAGAAGTTACATAAAGCTGTTCCAGGCCCCATGCCA GCGCTGCGGGAAGTTTCTGCAAGACGGCCTTCCCCCCACGTGGAGGGATTTCCGAACCCT CGAAGCCTTCCACGACACCTGCCGGCAGTAACCCGGCCCCAGCCCCGCATCCAGCACCTG CCCCAACGAGCCCTAAGTAACATGATGGTTCAGACGTGTCTTCCCGGCCCGGACACCAAC ACAGCCCCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGTGCTGAGCGTCGGCGTGAACCTGGAGGCCTTTTCCCAGGCCATCAGTGCTATCCA GGCGCTGCGCTCCAGCGTGAGCAGGGTGTTCGACTGCCTGAAGGATGGTATGCGCAACAA GGAGACGCTGGAGGGCCGGGAGAAGGCCTTCATTGCGCACTTCCAGGACAACTTGCATTC AGTCAACCGGGACCTCAATGAGCTGGAACGTCTGAGCAACTTGGTGGGCAAGCCTTCGGA GAACCATCCTCTCCATAACAGTGGGCTCCTGAGCCTGGACCCCGTGCAGGACAAAACTCC TCTGTACAGTCAGCTCCTTCAGGCGTACAAGTGGTCGAACAAGTTGCAGTACCACGCAGG ACTGGCGTCTGGCCTTTTGAATCAGCAGTCACTGAAACGCTCTGCTAACCAGATGGGAGT ATCCGCTAAACGTCGACCAAAGGCTCAGCCCACGACCCTTGTCTTGCCGCCTCAATACGT TGACGACGTGATCAGCCGCATTGACAGGATGTTTCCTGAAATGTCCATCCACTTATCCAG GCCCAATGGAACGTCTGCCATGCTTCTGGTGACCTTGGGGAAGGTGCTGAAAGTGATCGT GGTCATGCGGAGCCTGTTCATCGACCGCACGATAGTGAAGGGGTACAACGAAAACGTCTA CACCGAGGACGGCAAGCTTGATATATGGTCCAAATCCAACTATCAAGTATTCCAGAAGGT GACGGACCATGCCACCACTGCCCTGCTCCACTATCAGCTGCCCCAGATGCCAGACGTCGT GGTCCGATCCTTCATGACCTGGTTAAGAAGTTACATAAAGCTGTTCCAGGCCCCATGCCA GCGCTGCGGGAAGTTTCTGCAAGACGGCCTTCCCCCCACGTGGAGGGATTTCCGAACCCT CGAAGCCTTCCACGACACCTGCCGGCAGTAACCCGGCCCCAGCCCCGCATCCAGCACCTG CCCCAACGAGCCCTAAGTAACATGATGGTTCAGACGTGTCTTCCCGGCCCGGACACCAAC ACAGCCCCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 195-343, gnl|bosTau2|chr11 (82640855-82640707) | |
| 195-343, gnl|canFam2|chr9 (55482342-55482172) | |
| 195-343, gnl|danRer3|chr8 (4213632-4213799) | |
| 195-343, gnl|echTel1|scaffold_310336 (48725-48560) | |
| 195-343, gnl|fr1|chrUn (298163470-298163634) | |
| 195-343, gnl|galGal2|chr17 (3929294-3929129) | |
| 195-343, gnl|hg17|chr9 (131982376-131982546) | |
| 195-343, gnl|Hg17|chr9 (131982531-131982383) | |
| 195-343, gnl|loxAfr1|scaffold_63324 (191-323) | |
| 195-343, gnl|mm7|chr2 (29357309-29357141) | |
| 195-343, gnl|Mm7|chr2 (29357154-29357301) | |
| 195-343, gnl|monDom2|scaffold_51 (7750101-7750260) | |
| 195-343, gnl|oryCun1|scaffold_203768 (104742-104898) | |
| 195-343, gnl|panTro1|chr11 (116862337-116862507) | |
| 195-343, gnl|rheMac2|chr15 (6599523-6599353) | |
| 195-343, gnl|rn3|chr3 (8312281-8312113) | |
| 195-343, gnl|tetNig1|chrUn_random (85104311-85104148) | |
| 195-343, gnl|xenTro1|scaffold_191 (918821-918993) | |
| 568-676, gnl|bosTau2|chr11 (82457760-82457652) | |
| 568-676, gnl|canFam2|chr9 (55642350-55642221) | |
| 568-676, gnl|dasNov1|scaffold_29944 (17731-17860) | |
| 568-676, gnl|echTel1|scaffold_37257 (1142-1013) | |
| 568-676, gnl|fr1|chrUn (339289345-339289220) | |
| 568-676, gnl|galGal2|chr17 (3989415-3989292) | |
| 568-676, gnl|hg17|chr9 (131798818-131798947) | |
| 568-676, gnl|Hg17|chr9 (131798934-131798826) | |
| 568-676, gnl|loxAfr1|scaffold_8874 (3305-3176) | |
| 568-676, gnl|mm7|chr2 (29507647-29507518) | |
| 568-676, gnl|Mm7|chr2 (29507529-29507637) | |
| 568-676, gnl|monDom2|scaffold_51 (7523299-7523432) | |
| 568-676, gnl|oryCun1|scaffold_107426 (12533-12662) | |
| 568-676, gnl|panTro1|chr11 (116679480-116679609) | |
| 568-676, gnl|rheMac2|chr15 (6780067-6779939) | |
| 568-676, gnl|rn3|chr3 (8457490-8457361) | |
| 568-676, gnl|tetNig1|chrUn_random (85107231-85107099) | |
| 796-1032, gnl|bosTau2|chr11 (82426747-82426503) | |
| 796-1032, gnl|Hg17|chr9 (131765614-131765369) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-343, gnl|bosTau2|chr11 (82640855-82640707) | |
| 195-343, gnl|canFam2|chr9 (55482342-55482172) | |
| 195-343, gnl|danRer3|chr8 (4213632-4213799) | |
| 195-343, gnl|echTel1|scaffold_310336 (48725-48560) | |
| 195-343, gnl|fr1|chrUn (298163470-298163634) | |
| 195-343, gnl|galGal2|chr17 (3929294-3929129) | |
| 195-343, gnl|hg17|chr9 (131982376-131982546) | |
| 195-343, gnl|Hg17|chr9 (131982531-131982383) | |
| 195-343, gnl|loxAfr1|scaffold_63324 (191-323) | |
| 195-343, gnl|mm7|chr2 (29357309-29357141) | |
| 195-343, gnl|Mm7|chr2 (29357154-29357301) | |
| 195-343, gnl|monDom2|scaffold_51 (7750101-7750260) | |
| 195-343, gnl|oryCun1|scaffold_203768 (104742-104898) | |
| 195-343, gnl|panTro1|chr11 (116862337-116862507) | |
| 195-343, gnl|rheMac2|chr15 (6599523-6599353) | |
| 195-343, gnl|rn3|chr3 (8312281-8312113) | |
| 195-343, gnl|tetNig1|chrUn_random (85104311-85104148) | |
| 195-343, gnl|xenTro1|scaffold_191 (918821-918993) | |
| 568-676, gnl|bosTau2|chr11 (82457760-82457652) | |
| 568-676, gnl|canFam2|chr9 (55642350-55642221) | |
| 568-676, gnl|dasNov1|scaffold_29944 (17731-17860) | |
| 568-676, gnl|echTel1|scaffold_37257 (1142-1013) | |
| 568-676, gnl|fr1|chrUn (339289345-339289220) | |
| 568-676, gnl|galGal2|chr17 (3989415-3989292) | |
| 568-676, gnl|hg17|chr9 (131798818-131798947) | |
| 568-676, gnl|Hg17|chr9 (131798934-131798826) | |
| 568-676, gnl|loxAfr1|scaffold_8874 (3305-3176) | |
| 568-676, gnl|mm7|chr2 (29507647-29507518) | |
| 568-676, gnl|Mm7|chr2 (29507529-29507637) | |
| 568-676, gnl|monDom2|scaffold_51 (7523299-7523432) | |
| 568-676, gnl|oryCun1|scaffold_107426 (12533-12662) | |
| 568-676, gnl|panTro1|chr11 (116679480-116679609) | |
| 568-676, gnl|rheMac2|chr15 (6780067-6779939) | |
| 568-676, gnl|rn3|chr3 (8457490-8457361) | |
| 568-676, gnl|tetNig1|chrUn_random (85107231-85107099) | |
| 796-1032, gnl|bosTau2|chr11 (82426747-82426503) | |
| 796-1032, gnl|Hg17|chr9 (131765614-131765369) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| cje (0.165235) | |
| ute (0.132784) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| cje (0.165235) | |
| ute (0.132784) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) |