Ss1.1-Tes1-TES01A120007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGCTTAGACAATGCCCCGGAGCCGCCAGACCGTTGCGCCCCCGCCCCACTGTGGTACT GGAGCTCGTCTACCCCGGGACCCCTCAAAGCCAAAGCTCCAATCCCCGAGGCTTGAAGGC TAGGACTCTCTTCACCAACTCTGTCCTCAGGGGGGTGGGGCCCCAGCCAAGATCACAGAG CTGCGGGAGTGGGGGTGGCCGCTGGAGACCGGTGAAGTAAAAAGAGAAAACTAAGAAATC AGCGTGGCCGGAGGGGGCGTCCGTGTGGATGGGATGGGGACGCCAGGGGAGGGGCTGGGC CGCTGCTCCCATGCCCTGATCCGGGGGGTCCCGGAGAGCCTGGCGTCGGTGGAGGGTGCG GGGGCTGGCCTCCCGGCCCTGGACCTGGCCAAAGCTCAGAGGGAGCACGGGGTGCTGGGT GGTAAACTGAGACAGCGATTGGGGCTGCAGCTGTTAGAACTGCCTCCTGAAGAGTCGCTG CCGCTGGGACCGCTGCTCGGTGACACCGCGGTGATCCAAGGGGATACGGCCCTAATCACG AGACCCTGGAGCCCCGCCCGCAGGCCGGAGGTCGATGGAGTCCGCAAAGCCCTCCAGGAC CTGGGGCTCCGAATTGTGGAGATGGGGGACGAGAACGCGACACTGGATGGCACCGATGTT CTCTTCACCGGCCGCGAGTTTTTCGTAGGCCTTTCCAAGTGGACCAATCACCGTGGAGCT GAGATCGTGGCGGACACGTTCCGGGACTTTGCCGTCTCCACGGTGCCGGTCTCGGGCCCC TCCCACCTGCGTGGCCTCTGTGGCATGGGGGGACCACGCACTGTGGTGGCGGGTAGCAGC GAGGCAGCCCAAAAAGCTGTCAGGGCAATGGCAGTGTTGACGGATCATCCCTATGCCTCC CTGACCCTCCCAGATGACGCAGCGGCTGACTGTCTCTTTCTGCGTCCTGGGCTGCCGGGA GTGCCCCCGTTCCTCCTGCACCGTGGAGGTGGGGATCTACCCAACAGCCAGGAGGCACTG CAGAAGCTCTCTGACGTCACCCTGGTACCTGTGTCCTGCTCGGAACTGGAGAAGGCGGGC GCTGGGCTCAGCTCCCTCTGCCTGGTGCTCAGCACACGCCCCCACAGCTGAGAACCTGGC CTTGGGGTCCTGGCTGGCTAGGGGTAGGGCGGCATAGGAGTAGAAGGGGAAGGAGGGTTA GATGGAGGATGGCAAATAGGGAGTAGTGGGGAGAGGGCCCCAAGATCGGGGGAGGGCATA GGATAGAGGCCACTGGGTGACTCTTCTCCCCAAGAACTAATAAAATAGAACTGACCTTTT AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGCTTAGACAATGCCCCGGAGCCGCCAGACCGTTGCGCCCCCGCCCCACTGTGGTACT GGAGCTCGTCTACCCCGGGACCCCTCAAAGCCAAAGCTCCAATCCCCGAGGCTTGAAGGC TAGGACTCTCTTCACCAACTCTGTCCTCAGGGGGGTGGGGCCCCAGCCAAGATCACAGAG CTGCGGGAGTGGGGGTGGCCGCTGGAGACCGGTGAAGTAAAAAGAGAAAACTAAGAAATC AGCGTGGCCGGAGGGGGCGTCCGTGTGGATGGGATGGGGACGCCAGGGGAGGGGCTGGGC CGCTGCTCCCATGCCCTGATCCGGGGGGTCCCGGAGAGCCTGGCGTCGGTGGAGGGTGCG GGGGCTGGCCTCCCGGCCCTGGACCTGGCCAAAGCTCAGAGGGAGCACGGGGTGCTGGGT GGTAAACTGAGACAGCGATTGGGGCTGCAGCTGTTAGAACTGCCTCCTGAAGAGTCGCTG CCGCTGGGACCGCTGCTCGGTGACACCGCGGTGATCCAAGGGGATACGGCCCTAATCACG AGACCCTGGAGCCCCGCCCGCAGGCCGGAGGTCGATGGAGTCCGCAAAGCCCTCCAGGAC CTGGGGCTCCGAATTGTGGAGATGGGGGACGAGAACGCGACACTGGATGGCACCGATGTT CTCTTCACCGGCCGCGAGTTTTTCGTAGGCCTTTCCAAGTGGACCAATCACCGTGGAGCT GAGATCGTGGCGGACACGTTCCGGGACTTTGCCGTCTCCACGGTGCCGGTCTCGGGCCCC TCCCACCTGCGTGGCCTCTGTGGCATGGGGGGACCACGCACTGTGGTGGCGGGTAGCAGC GAGGCAGCCCAAAAAGCTGTCAGGGCAATGGCAGTGTTGACGGATCATCCCTATGCCTCC CTGACCCTCCCAGATGACGCAGCGGCTGACTGTCTCTTTCTGCGTCCTGGGCTGCCGGGA GTGCCCCCGTTCCTCCTGCACCGTGGAGGTGGGGATCTACCCAACAGCCAGGAGGCACTG CAGAAGCTCTCTGACGTCACCCTGGTACCTGTGTCCTGCTCGGAACTGGAGAAGGCGGGC GCTGGGCTCAGCTCCCTCTGCCTGGTGCTCAGCACACGCCCCCACAGCTGAGAACCTGGC CTTGGGGTCCTGGCTGGCTAGGGGTAGGGCGGCATAGGAGTAGAAGGGGAAGGAGGGTTA GATGGAGGATGGCAAATAGGGAGTAGTGGGGAGAGGGCCCCAAGATCGGGGGAGGGCATA GGATAGAGGCCACTGGGTGACTCTTCTCCCCAAGAACTAATAAAATAGAACTGACCTTTT AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 285-1321, - strand, RNAz p=0.879933 | |
| 744-1315, - strand, RNAz p=0.903369 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 285-1321, - strand, RNAz p=0.879933 | |
| 744-1315, - strand, RNAz p=0.903369 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 206-572, gnl|bosTau2|chr23 (23377370-23377004) | |
| 206-572, gnl|Hg17|chr6 (31804983-31804619) | |
| 206-572, gnl|Mm7|chr17 (33157191-33157553) | |
| 744-865, gnl|bosTau2|chr23 (23376429-23376308) | |
| 744-865, gnl|canFam2|chr12 (4210590-4210691) | |
| 744-865, gnl|dasNov1|scaffold_222137 (4412-4311) | |
| 744-865, gnl|echTel1|scaffold_303864 (84951-84996) | |
| 744-865, gnl|hg17|chr6 (31803919-31804020) | |
| 744-865, gnl|Hg17|chr6 (31804049-31803928) | |
| 744-865, gnl|mm7|chr17 (33158226-33158125) | |
| 744-865, gnl|Mm7|chr17 (33158094-33158215) | |
| 744-865, gnl|monDom2|scaffold_42 (17667414-17667315) | |
| 744-865, gnl|panTro1|chr5 (32206610-32206711) | |
| 744-865, gnl|rheMac2|chr4 (31373513-31373614) | |
| 744-865, gnl|rn3|chr20 (3831000-3831101) | |
| 744-865, gnl|tetNig1|chr21_random (3090427-3090522) | |
| 1008-1321, gnl|bosTau2|chr23 (23375185-23374864) | |
| 1008-1321, gnl|canFam2|chr12 (4209372-4210016) | |
| 1008-1321, gnl|echTel1|scaffold_303864 (83620-84223) | |
| 1008-1321, gnl|hg17|chr6 (31802747-31803381) | |
| 1008-1321, gnl|Hg17|chr6 (31803118-31802796) | |
| 1008-1321, gnl|mm7|chr17 (33159232-33158635) | |
| 1008-1321, gnl|Mm7|chr17 (33158874-33159180) | |
| 1008-1321, gnl|monDom2|scaffold_42 (17668336-17667703) | |
| 1008-1321, gnl|panTro1|chr5 (32205438-32206072) | |
| 1008-1321, gnl|rheMac2|chr4 (31372337-31372972) | |
| 1008-1321, gnl|rn3|chr20 (3829950-3830582) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 206-572, gnl|bosTau2|chr23 (23377370-23377004) | |
| 206-572, gnl|Hg17|chr6 (31804983-31804619) | |
| 206-572, gnl|Mm7|chr17 (33157191-33157553) | |
| 744-865, gnl|bosTau2|chr23 (23376429-23376308) | |
| 744-865, gnl|canFam2|chr12 (4210590-4210691) | |
| 744-865, gnl|dasNov1|scaffold_222137 (4412-4311) | |
| 744-865, gnl|echTel1|scaffold_303864 (84951-84996) | |
| 744-865, gnl|hg17|chr6 (31803919-31804020) | |
| 744-865, gnl|Hg17|chr6 (31804049-31803928) | |
| 744-865, gnl|mm7|chr17 (33158226-33158125) | |
| 744-865, gnl|Mm7|chr17 (33158094-33158215) | |
| 744-865, gnl|monDom2|scaffold_42 (17667414-17667315) | |
| 744-865, gnl|panTro1|chr5 (32206610-32206711) | |
| 744-865, gnl|rheMac2|chr4 (31373513-31373614) | |
| 744-865, gnl|rn3|chr20 (3831000-3831101) | |
| 744-865, gnl|tetNig1|chr21_random (3090427-3090522) | |
| 1008-1321, gnl|bosTau2|chr23 (23375185-23374864) | |
| 1008-1321, gnl|canFam2|chr12 (4209372-4210016) | |
| 1008-1321, gnl|echTel1|scaffold_303864 (83620-84223) | |
| 1008-1321, gnl|hg17|chr6 (31802747-31803381) | |
| 1008-1321, gnl|Hg17|chr6 (31803118-31802796) | |
| 1008-1321, gnl|mm7|chr17 (33159232-33158635) | |
| 1008-1321, gnl|Mm7|chr17 (33158874-33159180) | |
| 1008-1321, gnl|monDom2|scaffold_42 (17668336-17667703) | |
| 1008-1321, gnl|panTro1|chr5 (32205438-32206072) | |
| 1008-1321, gnl|rheMac2|chr4 (31372337-31372972) | |
| 1008-1321, gnl|rn3|chr20 (3829950-3830582) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| fce (0.814775) | |
| ecc (0.575175) | |
| cty (0.5204) | |
| amn (0.417711) | |
| cov (0.396458) | |
| eru (0.360144) | |
| ebs (0.354904) | |
| pty (0.285429) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.814775) | |
| ecc (0.575175) | |
| cty (0.5204) | |
| amn (0.417711) | |
| cov (0.396458) | |
| eru (0.360144) | |
| ebs (0.354904) | |
| pty (0.285429) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| csp (0.161186) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |