Ss1.1-Tes1-TES01A120039.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGCTGACGTCGCGAGCCATGGCCGTCTACCTCGGGATGCTGCGCGTCGTGAGGCTGTG CGCCGGGAGGCCGGAGGTGCTGGGGGCCGGGGGCGGCCTCTCCCGGGTTTGGCAGGAAGC GAGGCTGTGGGGCGTCCGTCCCCTCAGTTCTGGAGAGGTGGATCACACCGCCCCCCTGCC CATCGGAGGCCTCAGCTACATCCAGGGCAACACCAAATTGCGCCTTATTAACAAGACTGT GGGGTGGTGCCTGGATGCCACAGCACAGAAGATCCCGGACAAAGAGGCCTTGGTTGTCTT CCACGAAAACATAAGGTTGACCTTTGCCCAGCTCAAGGAGCAGGTGGACAAAGCTGCTGC TGGGCTCTTGAGTATCGGCCTCCGCAAGGGTGACCGGCTGGGCATGTGGGGACCCAACTC CTATGCATGGGTACTCATTCAGCTGGCCACAGCCCAGGCAGGCATCATTCTGGTGTCCGT GAACCCAGCCTACCAGGCTCCAGAGCTGGAGTATGCCCTCAAGAAGGTGGGCTGCAAAGC CCTCGTGTTCCCCAAGCAATTCAAGACCCAGCAGTACTACAACATCCTGAAGCAGATCTG TCCAGAGGTGGAGAAGGCCAAGCCAGGGGCCTTGAAGAGCCAGAGGCTCCCGGACCTGAC CATCGTCATCTCAGTGGACACCCCTCTGCCAGGGACCCTGTTTCTGGATGACGTGGTGGC AGCTGGCAATCAAGAGCAGCATCTGGCTCAGCTCCGGCACACGCAGAAGTTCCTGTCCTG CCATGACCCCATCAACATCCAGTTCACCTCGGGGACAACCGGCAGTCCCAAGGGGGCCAC GCTCTCCCACTACAACATCGTCAACAACTCCAACATGATAGGGGAGCGCCTGCAACTGTC ACAGAAGACGGCAGAGAAGTCAAGGATGGTCCTGCCCACCCCCCTGTACCACTGCCTGGG TTCCGTGGGGGGCACAATGGTGAGCTTGATGCATGGGGTCACCCTCATCCTGTCCTCTCC GGTCTTCGATGGCAAGAAGGCGCTGGAGGCCATTAGCAGAGAGAGAGGCTCCTTCCTGTA TGGCACCCCTACCATGTTCGTGGACATTCTGAACCAACCGGACTTCTCCAGTTACGACAT CTCAGCCATTTGTGGAGGTGTTATTGCCGGGTCACCCGTACCCCCAGAGCTGATCCGCGC CATCATCAACAAGATGAACATGAAGGAGCTGGTGGTGGCTTATGGAACCACAGAAAATAG TCCTGTCACTTTCATGAACTTTCCCGAGGACACCATGGAGCAGAAGGCAGAAAGTGTGGG CAGAGTTATGCCCCACACCGAGGCCCAGATCATGAATATGGAGACGAGGACACTGGCAGA GCTGAACACACCTGGAGAGCTGTGTATCCGGGGCTACTGCGTCATGCAGGGCTACTGGGG TGATCCTCAGAAGACAGACGAAGTAATCGGACAGGACAAGTGGTATCGGACAGGAGACAT CGCTGTGATGGACGAGCAGGGCTTCTGCAGGATCGTGGGTCGCGCCAAGGATATGATCAT CCGAGGCGGTGAGAACATCTACCCTGCGGAGCTGGAGGACTTCTTTCACACTCACCCACA GGTGCAGGATGTGCAGGTGGTGGGAGTGAAGGACAACCGGATGGGGGAGGAAATCTGTGC CTGCATTCGGCTCAAGAAGGGGGAGAAGACCACGGCGGAGGAGATCAAGGCTTTCTGCAA AGGGAAGATCTCCCACTTTAAGATTCCTCGGTACATCGTGTTTGTGACAGACTACCCCCT CACCGTCTCGGGAAAGGTCCAGAAATTCAAACTTCGAGAGCAGATGGAACAACGTCTAAA CCTGTGAATAAGAGAGGGGGGCAGTCCTCCCAGGCCCTCCCTGCCCTTTTCCCACATCCC CCCTCTTGTCCCTGTGATCCTGGCATAAAGAGCTTCTCTGTTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGCTGACGTCGCGAGCCATGGCCGTCTACCTCGGGATGCTGCGCGTCGTGAGGCTGTG CGCCGGGAGGCCGGAGGTGCTGGGGGCCGGGGGCGGCCTCTCCCGGGTTTGGCAGGAAGC GAGGCTGTGGGGCGTCCGTCCCCTCAGTTCTGGAGAGGTGGATCACACCGCCCCCCTGCC CATCGGAGGCCTCAGCTACATCCAGGGCAACACCAAATTGCGCCTTATTAACAAGACTGT GGGGTGGTGCCTGGATGCCACAGCACAGAAGATCCCGGACAAAGAGGCCTTGGTTGTCTT CCACGAAAACATAAGGTTGACCTTTGCCCAGCTCAAGGAGCAGGTGGACAAAGCTGCTGC TGGGCTCTTGAGTATCGGCCTCCGCAAGGGTGACCGGCTGGGCATGTGGGGACCCAACTC CTATGCATGGGTACTCATTCAGCTGGCCACAGCCCAGGCAGGCATCATTCTGGTGTCCGT GAACCCAGCCTACCAGGCTCCAGAGCTGGAGTATGCCCTCAAGAAGGTGGGCTGCAAAGC CCTCGTGTTCCCCAAGCAATTCAAGACCCAGCAGTACTACAACATCCTGAAGCAGATCTG TCCAGAGGTGGAGAAGGCCAAGCCAGGGGCCTTGAAGAGCCAGAGGCTCCCGGACCTGAC CATCGTCATCTCAGTGGACACCCCTCTGCCAGGGACCCTGTTTCTGGATGACGTGGTGGC AGCTGGCAATCAAGAGCAGCATCTGGCTCAGCTCCGGCACACGCAGAAGTTCCTGTCCTG CCATGACCCCATCAACATCCAGTTCACCTCGGGGACAACCGGCAGTCCCAAGGGGGCCAC GCTCTCCCACTACAACATCGTCAACAACTCCAACATGATAGGGGAGCGCCTGCAACTGTC ACAGAAGACGGCAGAGAAGTCAAGGATGGTCCTGCCCACCCCCCTGTACCACTGCCTGGG TTCCGTGGGGGGCACAATGGTGAGCTTGATGCATGGGGTCACCCTCATCCTGTCCTCTCC GGTCTTCGATGGCAAGAAGGCGCTGGAGGCCATTAGCAGAGAGAGAGGCTCCTTCCTGTA TGGCACCCCTACCATGTTCGTGGACATTCTGAACCAACCGGACTTCTCCAGTTACGACAT CTCAGCCATTTGTGGAGGTGTTATTGCCGGGTCACCCGTACCCCCAGAGCTGATCCGCGC CATCATCAACAAGATGAACATGAAGGAGCTGGTGGTGGCTTATGGAACCACAGAAAATAG TCCTGTCACTTTCATGAACTTTCCCGAGGACACCATGGAGCAGAAGGCAGAAAGTGTGGG CAGAGTTATGCCCCACACCGAGGCCCAGATCATGAATATGGAGACGAGGACACTGGCAGA GCTGAACACACCTGGAGAGCTGTGTATCCGGGGCTACTGCGTCATGCAGGGCTACTGGGG TGATCCTCAGAAGACAGACGAAGTAATCGGACAGGACAAGTGGTATCGGACAGGAGACAT CGCTGTGATGGACGAGCAGGGCTTCTGCAGGATCGTGGGTCGCGCCAAGGATATGATCAT CCGAGGCGGTGAGAACATCTACCCTGCGGAGCTGGAGGACTTCTTTCACACTCACCCACA GGTGCAGGATGTGCAGGTGGTGGGAGTGAAGGACAACCGGATGGGGGAGGAAATCTGTGC CTGCATTCGGCTCAAGAAGGGGGAGAAGACCACGGCGGAGGAGATCAAGGCTTTCTGCAA AGGGAAGATCTCCCACTTTAAGATTCCTCGGTACATCGTGTTTGTGACAGACTACCCCCT CACCGTCTCGGGAAAGGTCCAGAAATTCAAACTTCGAGAGCAGATGGAACAACGTCTAAA CCTGTGAATAAGAGAGGGGGGCAGTCCTCCCAGGCCCTCCCTGCCCTTTTCCCACATCCC CCCTCTTGTCCCTGTGATCCTGGCATAAAGAGCTTCTCTGTTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 141-347, gnl|bosTau2|chr19 (28969502-28969296) | |
| 141-347, gnl|Hg17|chr17 (45893030-45893236) | |
| 141-347, gnl|Mm7|chr11 (94682274-94682068) | |
| 644-812, gnl|bosTau2|chr19 (28967987-28967819) | |
| 644-812, gnl|canFam2|chr9 (29720024-29720212) | |
| 644-812, gnl|danRer3|chr12 (27533031-27533200) | |
| 644-812, gnl|dasNov1|scaffold_6172 (10599-10413) | |
| 644-812, gnl|echTel1|scaffold_319168 (74340-74151) | |
| 644-812, gnl|fr1|chrUn (159551172-159551340) | |
| 644-812, gnl|galGal2|chr3_random (1071955-1071771) | |
| 644-812, gnl|hg17|chr17 (45894763-45894951) | |
| 644-812, gnl|Hg17|chr17 (45894778-45894946) | |
| 644-812, gnl|mm7|chr11 (94680495-94680306) | |
| 644-812, gnl|Mm7|chr11 (94680477-94680309) | |
| 644-812, gnl|monDom2|scaffold_230 (261162-261357) | |
| 644-812, gnl|panTro1|chr19_random (31530996-31531184) | |
| 644-812, gnl|rheMac2|chr16 (34703135-34703323) | |
| 644-812, gnl|rn3|chr10 (83223500-83223312) | |
| 644-812, gnl|tetNig1|chr2 (1557372-1557197) | |
| 644-812, gnl|xenTro1|scaffold_485 (649233-649063) | |
| 906-1065, gnl|bosTau2|chr19 (28967058-28966899) | |
| 906-1065, gnl|Hg17|chr17 (45895753-45895912) | |
| 906-1065, gnl|Mm7|chr11 (94679501-94679342) | |
| 1338-1494, gnl|bosTau2|chr19 (28958438-28958282) | |
| 1338-1494, gnl|canFam2|chr9 (29729654-29729819) | |
| 1338-1494, gnl|danRer3|chr12 (27560773-27560931) | |
| 1338-1494, gnl|dasNov1|scaffold_81265 (4263-4098) | |
| 1338-1494, gnl|echTel1|scaffold_181706 (7696-7851) | |
| 1338-1494, gnl|fr1|chrUn (179894422-179894581) | |
| 1338-1494, gnl|galGal2|chr3_random (1050734-1050576) | |
| 1338-1494, gnl|hg17|chr17 (45904780-45904945) | |
| 1338-1494, gnl|Hg17|chr17 (45904783-45904939) | |
| 1338-1494, gnl|loxAfr1|scaffold_75157 (7197-7032) | |
| 1338-1494, gnl|mm7|chr11 (94670440-94670275) | |
| 1338-1494, gnl|Mm7|chr11 (94670435-94670279) | |
| 1338-1494, gnl|monDom2|scaffold_230 (275138-275303) | |
| 1338-1494, gnl|oryCun1|scaffold_213401 (1454-1618) | |
| 1338-1494, gnl|panTro1|chr19_random (31540970-31541135) | |
| 1338-1494, gnl|rheMac2|chr16 (34713073-34713238) | |
| 1338-1494, gnl|rn3|chr10 (83212893-83212728) | |
| 1338-1494, gnl|tetNig1|chr2 (1551046-1550879) | |
| 1338-1494, gnl|xenTro1|scaffold_485 (637504-637344) | |
| 1635-1747, gnl|bosTau2|chr19 (28957191-28957079) | |
| 1635-1747, gnl|Hg17|chr17 (45906252-45906364) | |
| 1635-1747, gnl|Mm7|chr11 (94668016-94667904) | |
| 1815-1964, gnl|bosTau2|chr19 (28956619-28956476) | |
| 1815-1964, gnl|Hg17|chr17 (45906860-45907190) | |
| 1815-1964, gnl|Mm7|chr11 (94667398-94666944) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-347, gnl|bosTau2|chr19 (28969502-28969296) | |
| 141-347, gnl|Hg17|chr17 (45893030-45893236) | |
| 141-347, gnl|Mm7|chr11 (94682274-94682068) | |
| 644-812, gnl|bosTau2|chr19 (28967987-28967819) | |
| 644-812, gnl|canFam2|chr9 (29720024-29720212) | |
| 644-812, gnl|danRer3|chr12 (27533031-27533200) | |
| 644-812, gnl|dasNov1|scaffold_6172 (10599-10413) | |
| 644-812, gnl|echTel1|scaffold_319168 (74340-74151) | |
| 644-812, gnl|fr1|chrUn (159551172-159551340) | |
| 644-812, gnl|galGal2|chr3_random (1071955-1071771) | |
| 644-812, gnl|hg17|chr17 (45894763-45894951) | |
| 644-812, gnl|Hg17|chr17 (45894778-45894946) | |
| 644-812, gnl|mm7|chr11 (94680495-94680306) | |
| 644-812, gnl|Mm7|chr11 (94680477-94680309) | |
| 644-812, gnl|monDom2|scaffold_230 (261162-261357) | |
| 644-812, gnl|panTro1|chr19_random (31530996-31531184) | |
| 644-812, gnl|rheMac2|chr16 (34703135-34703323) | |
| 644-812, gnl|rn3|chr10 (83223500-83223312) | |
| 644-812, gnl|tetNig1|chr2 (1557372-1557197) | |
| 644-812, gnl|xenTro1|scaffold_485 (649233-649063) | |
| 906-1065, gnl|bosTau2|chr19 (28967058-28966899) | |
| 906-1065, gnl|Hg17|chr17 (45895753-45895912) | |
| 906-1065, gnl|Mm7|chr11 (94679501-94679342) | |
| 1338-1494, gnl|bosTau2|chr19 (28958438-28958282) | |
| 1338-1494, gnl|canFam2|chr9 (29729654-29729819) | |
| 1338-1494, gnl|danRer3|chr12 (27560773-27560931) | |
| 1338-1494, gnl|dasNov1|scaffold_81265 (4263-4098) | |
| 1338-1494, gnl|echTel1|scaffold_181706 (7696-7851) | |
| 1338-1494, gnl|fr1|chrUn (179894422-179894581) | |
| 1338-1494, gnl|galGal2|chr3_random (1050734-1050576) | |
| 1338-1494, gnl|hg17|chr17 (45904780-45904945) | |
| 1338-1494, gnl|Hg17|chr17 (45904783-45904939) | |
| 1338-1494, gnl|loxAfr1|scaffold_75157 (7197-7032) | |
| 1338-1494, gnl|mm7|chr11 (94670440-94670275) | |
| 1338-1494, gnl|Mm7|chr11 (94670435-94670279) | |
| 1338-1494, gnl|monDom2|scaffold_230 (275138-275303) | |
| 1338-1494, gnl|oryCun1|scaffold_213401 (1454-1618) | |
| 1338-1494, gnl|panTro1|chr19_random (31540970-31541135) | |
| 1338-1494, gnl|rheMac2|chr16 (34713073-34713238) | |
| 1338-1494, gnl|rn3|chr10 (83212893-83212728) | |
| 1338-1494, gnl|tetNig1|chr2 (1551046-1550879) | |
| 1338-1494, gnl|xenTro1|scaffold_485 (637504-637344) | |
| 1635-1747, gnl|bosTau2|chr19 (28957191-28957079) | |
| 1635-1747, gnl|Hg17|chr17 (45906252-45906364) | |
| 1635-1747, gnl|Mm7|chr11 (94668016-94667904) | |
| 1815-1964, gnl|bosTau2|chr19 (28956619-28956476) | |
| 1815-1964, gnl|Hg17|chr17 (45906860-45907190) | |
| 1815-1964, gnl|Mm7|chr11 (94667398-94666944) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| ill (0.351185) | |
| nje (0.33184) | |
| nco (0.323468) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| ese (0.253004) | |
| clu (0.239292) | |
| ece (0.229305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| nje (0.33184) | |
| nco (0.323468) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| cov (0.264306) | |
| ese (0.253004) | |
| clu (0.239292) | |
| ece (0.229305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cut (0.169924) | |
| cje (0.165235) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |